Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003946

Physical Location & Seq

Genomic Coordinates Forward (+)

4852313 .. 4853419

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACCTTACCATGTCCTGAACTGACTTGGTTGTCGTCTGAGCAGTGGTTGAAGACACGACATGGTTATAGAAGTCCTAGCAAATCAATTATTTTCAGCTCAAAATGGGGGTCAATCTCGTGGTTTGTCGATCTTCCTATCATCGATGATACAAACTATGGCATCGGAATATATAAGTTCAGGGATGAACTTCAGAAGTTAGGTGTCATCACAGATTTTGAAGGGGGAGCTCTGTTTGTAGCTAAAGGTCTCTGTATCCCCTTCGAAGCTGAACTAGTTGGTGCAGATGGTATGGTATCGTTGCTAGAATGCATCAAGCCTCTGATGTCAAGGCCTCCTGATGAGCTTTTACTGACTGACTTTCTTAACAACATTGCAAAAAGCAGGTGTTTGAAGACTGGGGATGGTTACAAAACGCCGGAAGAGTGCATTCTGTTTGATCCAGCTTGGGAGAGTATTTTGAAGAGGTCCGATGCACCAAAAATTACAATTGATGAAAAGTTTTACGGAACTGATATTTTGGCATACAAGGATCAGTTAAGAGGTATTGGTGCGAATGTGGATCCCTTAGATGTTTGTTCTCTCATTTCGGGGCTTCTATTTTCACTCACAGATACATCTTCAATTACAAGAATTTATAGCTTTCTCAGTAAGTTCCACCGGCACCCGGAAGATTGCGTACTTTATGATAGGAACGACCGGTTTGGCTCCTGTTTGTTTTGTCTTGAAAACTTTTACAGCAAAGAGATCCTACCCATTTTTTCTTCAGCCTTTGGAGTGGCTGAAAATCCATCAACCAAAGATTACTTGCAGCTATGGAGCAGCTGGGCCTTGAGGGGTAATGGTCAAGTGACTATGGAAGAATGCAGCTTCTTTTGGGAAAATGTTTTCGATAACTGGAATCCTGAATTGGAGGATACTCTAAAGGGGAGCTTGACCAAATTACCTGCTACAATGTCCGTGGCCGAGGAAATATTTCTGATCAGCACAGGTGAAGTTTTCATTGGTGATGACTTGCAACTCAAGAAAAATTTCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

39.11

Weight (kDa)

4.71

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003946)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12160 FvH4_4g12170
malus_domestica	MD08G1075700.v1.1 MD08G1075800.v1.1 MD08G1076000.v1.1 MD15G1063200.v1.1
prunus_persica	Prupe.1G417200_v2.0.a1
pyrus_communis	pycom08g06260 pycom15g05980
rosa_chinensis	RchiOBHm_Chr4g0412151 RchiOBHm_Chr6g0275121
rosa_laevigata	RLG00000008313 RLG00000008314 RLG00000013495 RLG00000024070
rosa_multiflora	Rmu_sc0003510.1_g000026 Rmu_sc0004221.1_g000010 Rmu_sc0006012.1_g000009 Rmu_sc0011581.1_g000007 Rmu_ssc0000041.1_g000002
rosa_roxburghii	Rroxscaffold_5G00356420 Rroxscaffold_6G00408830
rosa_rugosa	Rorug03G0126700 Rorug04G0105600 Rorug06G0088600.1
rosa_samantha	Rh4AG171800 Rh4BG171000 Rh4BG171100 Rh4CG182600 Rh4DG166200 Rh6AG202600 Rh6DG198100
rosa_wichuraiana	Rw4G014340 Rw6G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	375
AasI	GACNNNNNNGTC	1 cut(s)	31
Acc36I	ACCTGC	2 cut(s)	375, 955
AccB1I	GGYRCC	1 cut(s)	663
AclWI	GGATC	5 cut(s)	434, 540, 557, 570, 742
AcoI	YGGCCR	1 cut(s)	963
AcsI	RAATTY	2 cut(s)	633, 1030
AcuI	CTGAAG	2 cut(s)	176, 750
AfaI	GTAC	1 cut(s)	681
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgeI	ACCGGT	1 cut(s)	699
AgsI	TTSAA	6 cut(s)	52, 221, 394, 463, 624, 728
AhlI	ACTAGT	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	4 cut(s)	893, 925, 987, 1019
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	5 cut(s)	434, 540, 557, 570, 742
AoxI	GGCC	3 cut(s)	332, 828, 963
ApeKI	GCWGC	3 cut(s)	811, 822, 867
ApoI	RAATTY	2 cut(s)	633, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AsiGI	ACCGGT	1 cut(s)	699
Asp700I	GAANNNNTTC	2 cut(s)	975, 1031
AspS9I	GGNCC	2 cut(s)	468, 828
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	2 cut(s)	1004, 1019
AsuII	TTCGAA	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	468
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	663
BanII	GRGCYC	1 cut(s)	232
BarI	GAAGNNNNNNTAC	2 cut(s)	663, 695
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	2 cut(s)	59, 401
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	3 cut(s)	823, 834, 879
BccI	CCATC	3 cut(s)	281, 398, 799
BciVI	GTATCC	2 cut(s)	266, 910
BclI	TGATCA	1 cut(s)	981
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	254
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	3 cut(s)	78, 275, 305
BfuAI	ACCTGC	2 cut(s)	375, 955
BfuI	GTATCC	2 cut(s)	266, 910
BisI	GCNGC	3 cut(s)	812, 823, 868
BlsI	GCNGC	3 cut(s)	813, 824, 869
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	2 cut(s)	468, 828
BmiI	GGNNCC	3 cut(s)	564, 665, 709
BmrFI	CCNGG	1 cut(s)	668
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	3 cut(s)	171, 321, 463
BmuI	ACTGGG	1 cut(s)	408
BpiI	GAAGAC	2 cut(s)	59, 401
Bpu14I	TTCGAA	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	853, 1007
BpuMI	CCSGG	1 cut(s)	668
Bsa29I	ATCGAT	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	960, 966
BsaWI	WCCGGW	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse118I	RCCGGY	2 cut(s)	660, 699
Bse1I	ACTGG	2 cut(s)	403, 902
Bse3DI	GCAATG	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	960, 966
BseGI	GGATG	2 cut(s)	190, 409
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	30, 661
BseNI	ACTGG	2 cut(s)	403, 902
BseXI	GCAGC	3 cut(s)	823, 834, 879
BseYI	CCCAGC	1 cut(s)	825
BsgI	GTGCAG	1 cut(s)	303
Bsh1285I	CGRYCG	1 cut(s)	700
BshFI	GGCC	3 cut(s)	334, 830, 965
BshNI	GGYRCC	1 cut(s)	663
BshTI	ACCGGT	1 cut(s)	699
BshVI	ATCGAT	1 cut(s)	144
BsiEI	CGRYCG	1 cut(s)	700
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	4 cut(s)	419, 661, 668, 700
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	1 cut(s)	254
BsmI	GAATGC	3 cut(s)	314, 429, 869
BsnI	GGCC	3 cut(s)	334, 830, 965
Bso31I	GGTCTC	1 cut(s)	254
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	6 cut(s)	130, 439, 532, 562, 747, 981
BspANI	GGCC	3 cut(s)	334, 830, 965
BspCNI	CTCAG	2 cut(s)	31, 660
BspDI	ATCGAT	1 cut(s)	144
BspLI	GGNNCC	3 cut(s)	564, 665, 709
BspMI	ACCTGC	2 cut(s)	375, 955
BspPI	GGATC	5 cut(s)	434, 540, 557, 570, 742
BspT104I	TTCGAA	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	372
BsrFI	RCCGGY	2 cut(s)	660, 699
BsrI	ACTGG	2 cut(s)	403, 902
BssAI	RCCGGY	2 cut(s)	660, 699
BssECI	CCNNGG	2 cut(s)	960, 966
BssMI	GATC	6 cut(s)	130, 439, 532, 562, 747, 981
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	417, 458
BstBI	TTCGAA	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	39, 568, 647
BstDSI	CCRYGG	1 cut(s)	960
BstF5I	GGATG	2 cut(s)	190, 409
BstKTI	GATC	6 cut(s)	133, 442, 535, 565, 750, 984
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	6 cut(s)	130, 439, 532, 562, 747, 981
BstMCI	CGRYCG	1 cut(s)	700
BstSCI	CCNGG	1 cut(s)	666
BstV1I	GCAGC	3 cut(s)	823, 834, 879
BstV2I	GAAGAC	2 cut(s)	59, 401
BstX2I	RGATCY	2 cut(s)	562, 747
BstYI	RGATCY	2 cut(s)	562, 747
Bsu15I	ATCGAT	1 cut(s)	144
BsuI	GTATCC	2 cut(s)	266, 910
BsuRI	GGCC	3 cut(s)	334, 830, 965
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	960
BtsCI	GGATG	2 cut(s)	190, 409
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	2 cut(s)	375, 955
Cfr10I	RCCGGY	2 cut(s)	660, 699
Cfr13I	GGNCC	2 cut(s)	468, 828
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	680
CspAI	ACCGGT	1 cut(s)	699
CspCI	CAANNNNNGTGG	2 cut(s)	942, 977
CviAII	CATG	2 cut(s)	12, 62
CviQI	GTAC	1 cut(s)	680
DdeI	CTNAG	3 cut(s)	39, 568, 647
DpnI	GATC	6 cut(s)	132, 441, 534, 564, 749, 983
DpnII	GATC	6 cut(s)	130, 439, 532, 562, 747, 981
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	963
Eam1104I	CTCTTC	2 cut(s)	417, 458
EarI	CTCTTC	2 cut(s)	417, 458
Ecl136II	GAGCTC	1 cut(s)	230
Eco147I	AGGCCT	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	468
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	176, 750
EcoICRI	GAGCTC	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	2 cut(s)	15, 65
FalI	AAGNNNNNCTT	2 cut(s)	917, 949
FatI	CATG	2 cut(s)	11, 61
FbaI	TGATCA	1 cut(s)	981
Fnu4HI	GCNGC	3 cut(s)	812, 823, 868
FokI	GGATG	2 cut(s)	197, 416
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	812, 823, 868
FspBI	CTAG	3 cut(s)	78, 275, 305
GluI	GCNGC	3 cut(s)	812, 823, 868
GsaI	CCCAGC	1 cut(s)	829
HaeIII	GGCC	3 cut(s)	334, 830, 965
HapII	CCGG	4 cut(s)	419, 661, 668, 700
Hin1II	CATG	2 cut(s)	15, 65
HinfI	GANTC	1 cut(s)	901
HpaII	CCGG	4 cut(s)	419, 661, 668, 700
HphI	GGTGA	2 cut(s)	1004, 1019
Hpy188I	TCNGA	6 cut(s)	40, 167, 195, 324, 472, 981
Hpy188III	TCNNGA	5 cut(s)	17, 338, 725, 905, 1024
HpyAV	CCTTC	2 cut(s)	215, 271
HpyCH4V	TGCA	8 cut(s)	284, 312, 377, 429, 476, 811, 867, 1018
HpyF3I	CTNAG	3 cut(s)	39, 568, 647
Hsp92II	CATG	2 cut(s)	15, 65
Ksp22I	TGATCA	1 cut(s)	981
Kzo9I	GATC	6 cut(s)	130, 439, 532, 562, 747, 981
LmnI	GCTCC	4 cut(s)	227, 713, 819, 930
Lsp1109I	GCAGC	3 cut(s)	823, 834, 879
LweI	GCATC	3 cut(s)	171, 321, 463
MaeI	CTAG	3 cut(s)	78, 275, 305
MaeIII	GTNAC	2 cut(s)	407, 850
MalI	GATC	6 cut(s)	132, 441, 534, 564, 749, 983
MboI	GATC	6 cut(s)	130, 439, 532, 562, 747, 981
MboII	GAAGA	9 cut(s)	64, 125, 406, 434, 475, 612, 683, 756, 872
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	562, 747
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	8 cut(s)	87, 483, 489, 624, 633, 908, 941, 1030
MnlI	CCTC	7 cut(s)	330, 345, 459, 536, 828, 907, 961
Mph1103I	ATGCAT	1 cut(s)	314
MroXI	GAANNNNTTC	2 cut(s)	975, 1031
MseI	TTAA	2 cut(s)	366, 539
MspA1I	CMGCKG	1 cut(s)	825
MspI	CCGG	4 cut(s)	419, 661, 668, 700
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	3 cut(s)	314, 429, 869
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	6 cut(s)	130, 439, 532, 562, 747, 981
NlaIII	CATG	2 cut(s)	15, 65
NlaIV	GGNNCC	3 cut(s)	564, 665, 709
NmeAIII	GCCGAG	1 cut(s)	991
NmuCI	GTSAC	1 cut(s)	850
NsiI	ATGCAT	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	264
PaqCI	CACCTGC	1 cut(s)	375
PceI	AGGCCT	1 cut(s)	334
PctI	GAATGC	3 cut(s)	314, 429, 869
PdmI	GAANNNNTTC	2 cut(s)	975, 1031
PfeI	GAWTC	1 cut(s)	901
PinAI	ACCGGT	1 cut(s)	699
PkrI	GCNGC	3 cut(s)	813, 824, 869
Psp124BI	GAGCTC	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	825
PspN4I	GGNNCC	3 cut(s)	564, 665, 709
PspPI	GGNCC	2 cut(s)	468, 828
PsuI	RGATCY	2 cut(s)	562, 747
PvuII	CAGCTG	1 cut(s)	825
RsaI	GTAC	1 cut(s)	681
RsaNI	GTAC	1 cut(s)	680
SacI	GAGCTC	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	366, 539
SatI	GCNGC	3 cut(s)	812, 823, 868
Sau3AI	GATC	6 cut(s)	130, 439, 532, 562, 747, 981
Sau96I	GGNCC	2 cut(s)	468, 828
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	3 cut(s)	171, 321, 463
SfuI	TTCGAA	1 cut(s)	264
SinI	GGWCC	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	832, 1022
SmoI	CTYRAG	2 cut(s)	832, 1022
SpeI	ACTAGT	1 cut(s)	274
Sse9I	AATT	8 cut(s)	87, 483, 489, 624, 633, 908, 941, 1030
SseBI	AGGCCT	1 cut(s)	334
SspI	AATATT	1 cut(s)	975
SspMI	CTAG	3 cut(s)	78, 275, 305
SstI	GAGCTC	1 cut(s)	232
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	666
TaqI	TCGA	4 cut(s)	129, 144, 264, 891
TasI	AATT	8 cut(s)	87, 483, 489, 624, 633, 908, 941, 1030
TfiI	GAWTC	1 cut(s)	901
Tru1I	TTAA	2 cut(s)	366, 539
Tru9I	TTAA	2 cut(s)	366, 539
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	850
TseI	GCWGC	3 cut(s)	811, 822, 867
Tsp45I	GTSAC	1 cut(s)	850
TspDTI	ATGAA	3 cut(s)	201, 510, 991
TspGWI	ACGGA	2 cut(s)	522, 949
TspRI	CASTG	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	468
XapI	RAATTY	2 cut(s)	633, 1030
XmnI	GAANNNNTTC	2 cut(s)	975, 1031
XspI	CTAG	3 cut(s)	78, 275, 305
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.