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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g12160 FvH4_4g12170 |
| malus_domestica | MD08G1075700.v1.1 MD08G1075800.v1.1 MD08G1076000.v1.1 MD15G1063200.v1.1 |
| prunus_persica | Prupe.1G417200_v2.0.a1 |
| pyrus_communis | pycom08g06260 pycom15g05980 |
| rosa_chinensis | RchiOBHm_Chr4g0412151 RchiOBHm_Chr6g0275121 |
| rosa_laevigata | RLG00000008313 RLG00000008314 RLG00000013495 RLG00000024070 |
| rosa_multiflora | Rmu_sc0003510.1_g000026 Rmu_sc0004221.1_g000010 Rmu_sc0006012.1_g000009 Rmu_sc0011581.1_g000007 Rmu_ssc0000041.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00356420 Rroxscaffold_6G00408830 |
| rosa_rugosa | Rorug03G0126700 Rorug04G0105600 Rorug06G0088600.1 |
| rosa_samantha | Rh4AG171800 Rh4BG171000 Rh4BG171100 Rh4CG182600 Rh4DG166200 Rh6AG202600 Rh6DG198100 |
| rosa_wichuraiana | Rw4G014340 Rw6G017590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 29, 1064, 3501, 4842 |
| AarI | CACCTGC | 1 cut(s) | 3807 |
| Acc36I | ACCTGC | 3 cut(s) | 1243, 3807, 4453 |
| AccB1I | GGYRCC | 3 cut(s) | 3232, 3379, 3635 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3631 |
| AccI | GTMKAC | 1 cut(s) | 1648 |
| AccII | CGCG | 1 cut(s) | 732 |
| AciI | CCGC | 5 cut(s) | 464, 656, 718, 732, 1710 |
| AclI | AACGTT | 1 cut(s) | 2342 |
| AcoI | YGGCCR | 1 cut(s) | 2013 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 390, 1719, 1968, 3206, 3631, 3784, 3785, 4467 |
| AflII | CTTAAG | 1 cut(s) | 1270 |
| AflIII | ACRYGT | 4 cut(s) | 1806, 2888, 3488, 4405 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3135 |
| AhlI | ACTAGT | 1 cut(s) | 155 |
| AjiI | CACGTC | 1 cut(s) | 3491 |
| AjnI | CCWGG | 2 cut(s) | 513, 3878 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 411, 443, 3031, 3063 |
| Alw21I | GWGCWC | 3 cut(s) | 207, 667, 3664 |
| Alw26I | GTCTC | 8 cut(s) | 391, 766, 779, 3402, 3771, 4795, 5200, 5283 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2663, 3631 |
| Ama87I | CYCGRG | 1 cut(s) | 3995 |
| AoxI | GGCC | 5 cut(s) | 373, 2013, 2379, 2508, 4968 |
| AseI | ATTAAT | 2 cut(s) | 3011, 3123 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 2045, 2454, 3861, 3888 |
| AspA2I | CCTAGG | 2 cut(s) | 2248, 2264 |
| AspLEI | GCGC | 1 cut(s) | 5029 |
| AspS9I | GGNCC | 5 cut(s) | 87, 1390, 2177, 2508, 4772 |
| AsuC2I | CCSGG | 1 cut(s) | 289 |
| AsuHPI | GGTGA | 5 cut(s) | 970, 1239, 2176, 3800, 4163 |
| AsuII | TTCGAA | 2 cut(s) | 1402, 2413 |
| AsuNHI | GCTAGC | 1 cut(s) | 2105 |
| AvaI | CYCGRG | 1 cut(s) | 3995 |
| AvaII | GGWCC | 4 cut(s) | 87, 1390, 2177, 4772 |
| AvrII | CCTAGG | 2 cut(s) | 2248, 2264 |
| AxyI | CCTNAGG | 1 cut(s) | 2847 |
| BalI | TGGCCA | 1 cut(s) | 2015 |
| BamHI | GGATCC | 2 cut(s) | 1371, 2085 |
| BanI | GGYRCC | 3 cut(s) | 3232, 3379, 3635 |
| BanII | GRGCYC | 2 cut(s) | 207, 3664 |
| BauI | CACGAG | 1 cut(s) | 1095 |
| BbsI | GAAGAC | 9 cut(s) | 60, 447, 1194, 2483, 2828, 3039, 3158, 3357, 4615 |
| Bbv12I | GWGCWC | 3 cut(s) | 207, 667, 3664 |
| BceAI | ACGGC | 3 cut(s) | 360, 1300, 4059 |
| BciT130I | CCWGG | 2 cut(s) | 515, 3880 |
| BciVI | GTATCC | 1 cut(s) | 4122 |
| BclI | TGATCA | 1 cut(s) | 4728 |
| BcnI | CCSGG | 1 cut(s) | 289 |
| BcoDI | GTCTC | 8 cut(s) | 391, 766, 779, 3402, 3771, 4795, 5200, 5283 |
| BcuI | ACTAGT | 1 cut(s) | 155 |
| BfmI | CTRYAG | 3 cut(s) | 1349, 3714, 5061 |
| BfrI | CTTAAG | 1 cut(s) | 1270 |
| BfuAI | ACCTGC | 3 cut(s) | 1243, 3807, 4453 |
| BfuI | GTATCC | 1 cut(s) | 4122 |
| BglII | AGATCT | 2 cut(s) | 603, 2948 |
| BlnI | CCTAGG | 2 cut(s) | 2248, 2264 |
| BlpI | GCTNAGC | 1 cut(s) | 867 |
| Bme1390I | CCNGG | 3 cut(s) | 289, 515, 3880 |
| Bme18I | GGWCC | 4 cut(s) | 87, 1390, 2177, 4772 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3135 |
| BmeT110I | CYCGRG | 1 cut(s) | 3995 |
| BmgBI | CACGTC | 1 cut(s) | 3491 |
| BmgT120I | GGNCC | 5 cut(s) | 87, 1390, 2177, 2508, 4772 |
| BmiI | GGNNCC | 9 cut(s) | 89, 1373, 1391, 1992, 2087, 3234, 3381, 3637, 4554 |
| BmrFI | CCNGG | 3 cut(s) | 289, 515, 3880 |
| BmrI | ACTGGG | 1 cut(s) | 2084 |
| BmtI | GCTAGC | 1 cut(s) | 2109 |
| BmuI | ACTGGG | 1 cut(s) | 2084 |
| BpiI | GAAGAC | 9 cut(s) | 60, 447, 1194, 2483, 2828, 3039, 3158, 3357, 4615 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1745, 1777, 2558, 2590, 4352, 4384 |
| BpmI | CTGGAG | 5 cut(s) | 315, 1517, 2316, 3608, 4108 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3702 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 867 |
| Bpu14I | TTCGAA | 2 cut(s) | 1402, 2413 |
| BpuEI | CTTGAG | 3 cut(s) | 1224, 2996, 4522 |
| BpuMI | CCSGG | 1 cut(s) | 289 |
| Bsa29I | ATCGAT | 2 cut(s) | 354, 3356 |
| BsaAI | YACGTR | 1 cut(s) | 4616 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2947, 3727 |
| BsaI | GGTCTC | 1 cut(s) | 3771 |
| BsaJI | CCNNGG | 7 cut(s) | 708, 2248, 2264, 3143, 3879, 4461, 4633 |
| BsaWI | WCCGGW | 1 cut(s) | 1368 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2798, 2828, 3019, 3049, 3294, 3324 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 390, 1719, 1968, 3206, 3631, 3784, 3785, 4467 |
| Bse1I | ACTGG | 9 cut(s) | 1401, 1521, 2090, 3061, 3937, 4153, 4400, 5028, 5215 |
| Bse21I | CCTNAGG | 1 cut(s) | 2847 |
| Bse3DI | GCAATG | 5 cut(s) | 484, 1605, 3731, 3804, 4503 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2947, 3727 |
| BseBI | CCWGG | 2 cut(s) | 515, 3880 |
| BseCI | ATCGAT | 2 cut(s) | 354, 3356 |
| BseDI | CCNNGG | 7 cut(s) | 708, 2248, 2264, 3143, 3879, 4461, 4633 |
| BseJI | GATNNNNATC | 2 cut(s) | 2947, 3727 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 390, 1719, 1968, 3206, 3631, 3784, 3785, 4467 |
| BseMI | GCAATG | 5 cut(s) | 484, 1605, 3731, 3804, 4503 |
| BseMII | CTCAG | 9 cut(s) | 588, 858, 1248, 2315, 2720, 3359, 3693, 4068, 5063 |
| BseNI | ACTGG | 9 cut(s) | 1401, 1521, 2090, 3061, 3937, 4153, 4400, 5028, 5215 |
| BseRI | GAGGAG | 2 cut(s) | 3011, 3672 |
| BseYI | CCCAGC | 2 cut(s) | 3631, 3784 |
| BsgI | GTGCAG | 4 cut(s) | 125, 665, 1509, 1540 |
| Bsh1236I | CGCG | 1 cut(s) | 732 |
| BshFI | GGCC | 5 cut(s) | 375, 2015, 2381, 2510, 4970 |
| BshNI | GGYRCC | 3 cut(s) | 3232, 3379, 3635 |
| BshVI | ATCGAT | 2 cut(s) | 354, 3356 |
| BsiHKAI | GWGCWC | 3 cut(s) | 207, 667, 3664 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3995 |
| BsiSI | CCGG | 2 cut(s) | 288, 1369 |
| BslFI | GGGAC | 5 cut(s) | 1133, 1403, 1782, 3430, 3736 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 390, 1719, 1968, 3206, 3631, 3784, 3785, 4467 |
| BsmAI | GTCTC | 8 cut(s) | 391, 766, 779, 3402, 3771, 4795, 5200, 5283 |
| BsmBI | CGTCTC | 1 cut(s) | 5200 |
| BsmFI | GGGAC | 5 cut(s) | 1133, 1403, 1782, 3430, 3736 |
| BsmI | GAATGC | 4 cut(s) | 220, 1171, 2454, 2927 |
| BsnI | GGCC | 5 cut(s) | 375, 2015, 2381, 2510, 4970 |
| Bso31I | GGTCTC | 1 cut(s) | 3771 |
| BsoBI | CYCGRG | 1 cut(s) | 3995 |
| Bsp119I | TTCGAA | 2 cut(s) | 1402, 2413 |
| Bsp1286I | GDGCHC | 3 cut(s) | 207, 667, 3664 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 867 |
| Bsp19I | CCATGG | 1 cut(s) | 4461 |
| BspACI | CCGC | 5 cut(s) | 464, 656, 718, 732, 1710 |
| BspANI | GGCC | 5 cut(s) | 375, 2015, 2381, 2510, 4970 |
| BspCNI | CTCAG | 9 cut(s) | 589, 859, 1249, 2316, 2719, 3358, 3694, 4069, 5064 |
| BspDI | ATCGAT | 2 cut(s) | 354, 3356 |
| BspFNI | CGCG | 1 cut(s) | 732 |
| BspHI | TCATGA | 2 cut(s) | 2359, 4183 |
| BspLI | GGNNCC | 9 cut(s) | 89, 1373, 1391, 1992, 2087, 3234, 3381, 3637, 4554 |
| BspMAI | CTGCAG | 3 cut(s) | 1353, 3718, 5065 |
| BspMI | ACCTGC | 3 cut(s) | 1243, 3807, 4453 |
| BspOI | GCTAGC | 1 cut(s) | 2109 |
| BspT104I | TTCGAA | 2 cut(s) | 1402, 2413 |
| BspT107I | GGYRCC | 3 cut(s) | 3232, 3379, 3635 |
| BspTI | CTTAAG | 1 cut(s) | 1270 |
| BspTNI | GGTCTC | 1 cut(s) | 3771 |
| BsrDI | GCAATG | 5 cut(s) | 484, 1605, 3731, 3804, 4503 |
| BsrI | ACTGG | 9 cut(s) | 1401, 1521, 2090, 3061, 3937, 4153, 4400, 5028, 5215 |
| BssECI | CCNNGG | 7 cut(s) | 708, 2248, 2264, 3143, 3879, 4461, 4633 |
| BssSI | CACGAG | 1 cut(s) | 1095 |
| BssT1I | CCWWGG | 6 cut(s) | 708, 2248, 2264, 3143, 4461, 4633 |
| Bst2BI | CACGAG | 1 cut(s) | 1095 |
| Bst2UI | CCWGG | 2 cut(s) | 515, 3880 |
| Bst6I | CTCTTC | 5 cut(s) | 72, 389, 1442, 4014, 4353 |
| BstAFI | CTTAAG | 1 cut(s) | 1270 |
| BstBAI | YACGTR | 1 cut(s) | 4616 |
| BstBI | TTCGAA | 2 cut(s) | 1402, 2413 |
| BstC8I | GCNNGC | 3 cut(s) | 2107, 3237, 3294 |
| BstDSI | CCRYGG | 1 cut(s) | 4461 |
| BstFNI | CGCG | 1 cut(s) | 732 |
| BstHHI | GCGC | 1 cut(s) | 5029 |
| BstMAI | GTCTC | 8 cut(s) | 391, 766, 779, 3402, 3771, 4795, 5200, 5283 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 372, 662, 5066 |
| BstNI | CCWGG | 2 cut(s) | 515, 3880 |
| BstNSI | RCATGY | 3 cut(s) | 2561, 2892, 4409 |
| BstSCI | CCNGG | 3 cut(s) | 287, 513, 3878 |
| BstSFI | CTRYAG | 3 cut(s) | 1349, 3714, 5061 |
| BstSNI | TACGTA | 1 cut(s) | 4616 |
| BstUI | CGCG | 1 cut(s) | 732 |
| BstV2I | GAAGAC | 9 cut(s) | 60, 447, 1194, 2483, 2828, 3039, 3158, 3357, 4615 |
| BstX2I | RGATCY | 7 cut(s) | 603, 1371, 2085, 2852, 2948, 3562, 3988 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 521, 1042, 3304, 5272 |
| BstYI | RGATCY | 7 cut(s) | 603, 1371, 2085, 2852, 2948, 3562, 3988 |
| Bsu15I | ATCGAT | 2 cut(s) | 354, 3356 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2847 |
| BsuI | GTATCC | 1 cut(s) | 4122 |
| BsuRI | GGCC | 5 cut(s) | 375, 2015, 2381, 2510, 4970 |
| BsuTUI | ATCGAT | 2 cut(s) | 354, 3356 |
| BtgI | CCRYGG | 1 cut(s) | 4461 |
| BtgZI | GCGATG | 1 cut(s) | 1055 |
| BtrI | CACGTC | 1 cut(s) | 3491 |
| BtsIMutI | CAGTG | 5 cut(s) | 1492, 1528, 4031, 4074, 5069 |
| BveI | ACCTGC | 3 cut(s) | 1243, 3807, 4453 |
| Cac8I | GCNNGC | 3 cut(s) | 2107, 3237, 3294 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2663, 3631 |
| CciI | TCATGA | 2 cut(s) | 2359, 4183 |
| CfoI | GCGC | 1 cut(s) | 5029 |
| Cfr13I | GGNCC | 5 cut(s) | 87, 1390, 2177, 2508, 4772 |
| ClaI | ATCGAT | 2 cut(s) | 354, 3356 |
| CseI | GACGC | 1 cut(s) | 65 |
| DraI | TTTAAA | 2 cut(s) | 1305, 3352 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3135 |
| EaeI | YGGCCR | 1 cut(s) | 2013 |
| Eam1104I | CTCTTC | 5 cut(s) | 72, 389, 1442, 4014, 4353 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3135 |
| EarI | CTCTTC | 5 cut(s) | 72, 389, 1442, 4014, 4353 |
| Ecl136II | GAGCTC | 2 cut(s) | 205, 3662 |
| Eco105I | TACGTA | 1 cut(s) | 4616 |
| Eco130I | CCWWGG | 6 cut(s) | 708, 2248, 2264, 3143, 4461, 4633 |
| Eco147I | AGGCCT | 1 cut(s) | 2381 |
| Eco24I | GRGCYC | 2 cut(s) | 207, 3664 |
| Eco31I | GGTCTC | 1 cut(s) | 3771 |
| Eco32I | GATATC | 2 cut(s) | 485, 2572 |
| Eco47I | GGWCC | 4 cut(s) | 87, 1390, 2177, 4772 |
| Eco53kI | GAGCTC | 2 cut(s) | 205, 3662 |
| Eco81I | CCTNAGG | 1 cut(s) | 2847 |
| Eco88I | CYCGRG | 1 cut(s) | 3995 |
| EcoICRI | GAGCTC | 2 cut(s) | 205, 3662 |
| EcoO109I | RGGNCCY | 2 cut(s) | 87, 1390 |
| EcoRI | GAATTC | 2 cut(s) | 1134, 1681 |
| EcoRII | CCWGG | 2 cut(s) | 513, 3878 |
| EcoRV | GATATC | 2 cut(s) | 485, 2572 |
| EcoT14I | CCWWGG | 6 cut(s) | 708, 2248, 2264, 3143, 4461, 4633 |
| EcoT22I | ATGCAT | 1 cut(s) | 2070 |
| EcoT38I | GRGCYC | 2 cut(s) | 207, 3664 |
| ErhI | CCWWGG | 6 cut(s) | 708, 2248, 2264, 3143, 4461, 4633 |
| Esp3I | CGTCTC | 1 cut(s) | 5200 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 551, 583, 872, 904, 1439, 1471, 2262, 2294 |
| FaqI | GGGAC | 5 cut(s) | 1133, 1403, 1782, 3430, 3736 |
| FauI | CCCGC | 1 cut(s) | 725 |
| FauNDI | CATATG | 1 cut(s) | 578 |
| FbaI | TGATCA | 1 cut(s) | 4728 |
| FblI | GTMKAC | 1 cut(s) | 1648 |
| FriOI | GRGCYC | 2 cut(s) | 207, 3664 |
| GlaI | GCGC | 1 cut(s) | 5028 |
| GsaI | CCCAGC | 2 cut(s) | 3635, 3788 |
| GsuI | CTGGAG | 5 cut(s) | 315, 1517, 2316, 3608, 4108 |
| HaeIII | GGCC | 5 cut(s) | 375, 2015, 2381, 2510, 4970 |
| HapII | CCGG | 2 cut(s) | 288, 1369 |
| HgaI | GACGC | 1 cut(s) | 65 |
| HhaI | GCGC | 1 cut(s) | 5029 |
| Hin6I | GCGC | 1 cut(s) | 5027 |
| HinP1I | GCGC | 1 cut(s) | 5027 |
| HincII | GTYRAC | 3 cut(s) | 3140, 4434, 5125 |
| HindII | GTYRAC | 3 cut(s) | 3140, 4434, 5125 |
| HindIII | AAGCTT | 2 cut(s) | 21, 638 |
| HpaII | CCGG | 2 cut(s) | 288, 1369 |
| HphI | GGTGA | 5 cut(s) | 970, 1239, 2176, 3800, 4163 |
| HpyCH4IV | ACGT | 4 cut(s) | 1806, 2342, 3490, 4615 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 372, 662, 5066 |
| HpySE526I | ACGT | 4 cut(s) | 1806, 2342, 3490, 4615 |
| HspAI | GCGC | 1 cut(s) | 5027 |
| Ksp22I | TGATCA | 1 cut(s) | 4728 |
| LmnI | GCTCC | 8 cut(s) | 14, 202, 296, 1786, 1821, 2848, 3107, 3659 |
| MaeII | ACGT | 4 cut(s) | 1806, 2342, 3490, 4615 |
| MfeI | CAATTG | 5 cut(s) | 668, 1906, 3693, 3915, 4520 |
| MflI | RGATCY | 7 cut(s) | 603, 1371, 2085, 2852, 2948, 3562, 3988 |
| MhlI | GDGCHC | 3 cut(s) | 207, 667, 3664 |
| MlsI | TGGCCA | 1 cut(s) | 2015 |
| MluNI | TGGCCA | 1 cut(s) | 2015 |
| MlyI | GAGTC | 7 cut(s) | 110, 1286, 2335, 2818, 3028, 3499, 4099 |
| MmeI | TCCRAC | 3 cut(s) | 1092, 3292, 3301 |
| Mox20I | TGGCCA | 1 cut(s) | 2015 |
| Mph1103I | ATGCAT | 1 cut(s) | 2070 |
| MroXI | GAANNNNTTC | 4 cut(s) | 2045, 2454, 3861, 3888 |
| MscI | TGGCCA | 1 cut(s) | 2015 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1040, 1953, 2835, 3302, 5270 |
| Msp20I | TGGCCA | 1 cut(s) | 2015 |
| MspA1I | CMGCKG | 2 cut(s) | 874, 5060 |
| MspCI | CTTAAG | 1 cut(s) | 1270 |
| MspI | CCGG | 2 cut(s) | 288, 1369 |
| MspR9I | CCNGG | 3 cut(s) | 289, 515, 3880 |
| MunI | CAATTG | 5 cut(s) | 668, 1906, 3693, 3915, 4520 |
| Mva1269I | GAATGC | 4 cut(s) | 220, 1171, 2454, 2927 |
| MvaI | CCWGG | 2 cut(s) | 515, 3880 |
| MvnI | CGCG | 1 cut(s) | 732 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 372, 662, 5066 |
| NciI | CCSGG | 1 cut(s) | 289 |
| NcoI | CCATGG | 1 cut(s) | 4461 |
| NdeI | CATATG | 1 cut(s) | 578 |
| NheI | GCTAGC | 1 cut(s) | 2105 |
| NlaIV | GGNNCC | 9 cut(s) | 89, 1373, 1391, 1992, 2087, 3234, 3381, 3637, 4554 |
| NmeAIII | GCCGAG | 1 cut(s) | 193 |
| NmuCI | GTSAC | 8 cut(s) | 151, 822, 1510, 3031, 3788, 4029, 4348, 4847 |
| NsiI | ATGCAT | 1 cut(s) | 2070 |
| NspI | RCATGY | 3 cut(s) | 2561, 2892, 4409 |
| NspV | TTCGAA | 2 cut(s) | 1402, 2413 |
| PaeR7I | CTCGAG | 1 cut(s) | 3995 |
| PagI | TCATGA | 2 cut(s) | 2359, 4183 |
| PaqCI | CACCTGC | 1 cut(s) | 3807 |
| PceI | AGGCCT | 1 cut(s) | 2381 |
| PciI | ACATGT | 2 cut(s) | 2888, 4405 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1642 |
| PctI | GAATGC | 4 cut(s) | 220, 1171, 2454, 2927 |
| PdmI | GAANNNNTTC | 4 cut(s) | 2045, 2454, 3861, 3888 |
| PflFI | GACNNNGTC | 1 cut(s) | 3794 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3631 |
| PleI | GAGTC | 7 cut(s) | 110, 1285, 2334, 2818, 3028, 3499, 4098 |
| PpsI | GAGTC | 7 cut(s) | 110, 1285, 2334, 2818, 3028, 3499, 4098 |
| Ppu21I | YACGTR | 1 cut(s) | 4616 |
| PpuMI | RGGWCCY | 2 cut(s) | 87, 1390 |
| PscI | ACATGT | 2 cut(s) | 2888, 4405 |
| PshBI | ATTAAT | 2 cut(s) | 3011, 3123 |
| PsiI | TTATAA | 4 cut(s) | 29, 1064, 3501, 4842 |
| Psp124BI | GAGCTC | 2 cut(s) | 207, 3664 |
| Psp1406I | AACGTT | 1 cut(s) | 2342 |
| Psp5II | RGGWCCY | 2 cut(s) | 87, 1390 |
| Psp6I | CCWGG | 2 cut(s) | 513, 3878 |
| PspFI | CCCAGC | 2 cut(s) | 3631, 3784 |
| PspGI | CCWGG | 2 cut(s) | 513, 3878 |
| PspN4I | GGNNCC | 9 cut(s) | 89, 1373, 1391, 1992, 2087, 3234, 3381, 3637, 4554 |
| PspPI | GGNCC | 5 cut(s) | 87, 1390, 2177, 2508, 4772 |
| PspPPI | RGGWCCY | 2 cut(s) | 87, 1390 |
| PstI | CTGCAG | 3 cut(s) | 1353, 3718, 5065 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2663, 3631 |
| PsuI | RGATCY | 7 cut(s) | 603, 1371, 2085, 2852, 2948, 3562, 3988 |
| PsyI | GACNNNGTC | 1 cut(s) | 3794 |
| PvuII | CAGCTG | 2 cut(s) | 874, 5060 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1040, 1953, 2835, 3302, 5270 |
| SacI | GAGCTC | 2 cut(s) | 207, 3664 |
| Sau96I | GGNCC | 5 cut(s) | 87, 1390, 2177, 2508, 4772 |
| SchI | GAGTC | 7 cut(s) | 110, 1286, 2335, 2818, 3028, 3499, 4099 |
| ScrFI | CCNGG | 3 cut(s) | 289, 515, 3880 |
| SduI | GDGCHC | 3 cut(s) | 207, 667, 3664 |
| SfcI | CTRYAG | 3 cut(s) | 1349, 3714, 5061 |
| Sfr274I | CTCGAG | 1 cut(s) | 3995 |
| SfuI | TTCGAA | 2 cut(s) | 1402, 2413 |
| SinI | GGWCC | 4 cut(s) | 87, 1390, 2177, 4772 |
| SlaI | CTCGAG | 1 cut(s) | 3995 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1040, 1953, 2835, 3302, 5270 |
| SmlI | CTYRAG | 5 cut(s) | 1239, 1270, 2975, 3995, 4537 |
| SmoI | CTYRAG | 5 cut(s) | 1239, 1270, 2975, 3995, 4537 |
| SnaBI | TACGTA | 1 cut(s) | 4616 |
| SpeI | ACTAGT | 1 cut(s) | 155 |
| SseBI | AGGCCT | 1 cut(s) | 2381 |
| SsiI | CCGC | 5 cut(s) | 464, 656, 718, 732, 1710 |
| SspI | AATATT | 1 cut(s) | 2113 |
| SstI | GAGCTC | 2 cut(s) | 207, 3664 |
| StuI | AGGCCT | 1 cut(s) | 2381 |
| StyD4I | CCNGG | 3 cut(s) | 287, 513, 3878 |
| StyI | CCWWGG | 6 cut(s) | 708, 2248, 2264, 3143, 4461, 4633 |
| TaiI | ACGT | 4 cut(s) | 1809, 2345, 3493, 4618 |
| TatI | WGTACW | 6 cut(s) | 231, 1694, 1809, 2295, 3252, 4892 |
| TauI | GCSGC | 1 cut(s) | 721 |
| TscAI | CASTG | 5 cut(s) | 1492, 1528, 4038, 4081, 5076 |
| TseFI | GTSAC | 8 cut(s) | 151, 822, 1510, 3031, 3788, 4029, 4348, 4847 |
| Tsp45I | GTSAC | 8 cut(s) | 151, 822, 1510, 3031, 3788, 4029, 4348, 4847 |
| TspGWI | ACGGA | 2 cut(s) | 1047, 3659 |
| TspRI | CASTG | 5 cut(s) | 1492, 1528, 4038, 4081, 5076 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3794 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3631 |
| Vha464I | CTTAAG | 1 cut(s) | 1270 |
| VpaK11BI | GGWCC | 4 cut(s) | 87, 1390, 2177, 4772 |
| VspI | ATTAAT | 2 cut(s) | 3011, 3123 |
| XbaI | TCTAGA | 2 cut(s) | 4993, 5149 |
| XceI | RCATGY | 3 cut(s) | 2561, 2892, 4409 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3304 |
| XhoI | CTCGAG | 1 cut(s) | 3995 |
| XmaJI | CCTAGG | 2 cut(s) | 2248, 2264 |
| XmiI | GTMKAC | 1 cut(s) | 1648 |
| XmnI | GAANNNNTTC | 4 cut(s) | 2045, 2454, 3861, 3888 |
| Zsp2I | ATGCAT | 1 cut(s) | 2070 |