Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003946

Physical Location & Seq

Genomic Coordinates Forward (+)

28801091 .. 28802844

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008314

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGTCCCGATCGCTTGATGATCCCTTGGTGGGAGATTTTCTGAAGAACATTGCAAACAGCAGGTGTTTGAAGACCACAAACGGTTATAAAGCGCCAGAAGACTGCATTCTATTTGATTCATCCTGGGAATGCATTCTGAACAGGTCGGATGCACCAAGCATCGATGAAACATTTTACAGAACTGACATTTCTGCTTACAAGAATCACCTGAGAGATGTTGGTGTGAAGGTAGATCCTCAGGATGTTTGTTCTTTTCTTTCTGGGCATCTTTTGTCTCTGACAGACACAGCTTCAATAACAAGGATATATAGTTTCCTCAACAAGTTCCAGTGGAGTCCTAAAGTTCTAGATAAGTGCAACTCTCAGGTGTGGATTCCTGAACCAAAGAGTACAGCAGGGGTATGGGTAAAATCTCAATGTTGTGTACTTCATGATAAGAAAAATCTGTTTGGCTCTTGTTTGTTCAGTCTGGACAAATCTTACAGTAAAGAGCTTCTCCCCATTTTTTCTTCAGCCTTTGGAGTTCCTGAAAATCCATCTATCAAGGATTACTTGCTGCTATGGGACATTTGGGCCTCAGTGAACAGCTCTAAAGTGACAGTTGAAAAATGCAGCTCGTTTTGGAAATGTATTGTTGACAACTGGAATCCACACATTCAAGAGACCCTAAAACAGAACTTAACAAAAGTACCGGCCACAATGTCCATGTCGGGGCAAATATATCTGATCAGAAAAGAGGAAGCATTCATTGCTGATGATTTGCAACTGAAAACAATTTTTTCGAGCTTTCATAAGGCACCTCTGTTTGTCTGGTTTCCCAATAGCTCGTCTTCTGTTCCTCATAGAAGACTTCTTGAAATTTATGAATCTCTTGGAGTTAGAAAGATCTCTGCATCTGTTAAGTGCACTGTGAAGGGCATGCTATCATCAGAGCATTGGGAAAAGGTTGAACAAAATAATGGATTGATTGGCAGGAGTTTGACCAAAATTGTTCTGGCTTTTCTTGCTGGTCCTGAGCTGAATATGCCGTTCAAAGAGAGACATGAGGCTGCAAAATTGATGAGTGTACTGACAGTGTATAAGACTGACAAACCAATTAAAGTCTGTTATCAACTAATGCCATGCGCAAGTACGACAGTGGAAGTGGAAAAACTGAAGCTGGTTCTTTGGGAGAAGGATTCTAAGCGGCTGTTCATTGATAAATCAGGTTATGATGGAGGAAAATGTGATTTAGAATTCGTTACTTCTTTTGCCAATGAACTTGCACAAGGACTACTAGCACAGGCAAGACCTGCAGCTGCTCATGCTTTAAGCAGAATTCTCCAAATGGCATACATATATGGTTTTAATGAGAATGAAGTGGAGTTTTTGCTGATGACTGAAAACTTAGAGTTATTTGTGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

470

Amino Acids

53.11

Weight (kDa)

6.76

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003946)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12160 FvH4_4g12170
malus_domestica	MD08G1075700.v1.1 MD08G1075800.v1.1 MD08G1076000.v1.1 MD15G1063200.v1.1
prunus_persica	Prupe.1G417200_v2.0.a1
pyrus_communis	pycom08g06260 pycom15g05980
rosa_chinensis	RchiOBHm_Chr4g0412151 RchiOBHm_Chr6g0275121
rosa_laevigata	RLG00000008313 RLG00000008314 RLG00000013495 RLG00000024070
rosa_multiflora	Rmu_sc0003510.1_g000026 Rmu_sc0004221.1_g000010 Rmu_sc0006012.1_g000009 Rmu_sc0011581.1_g000007 Rmu_ssc0000041.1_g000002
rosa_roxburghii	Rroxscaffold_5G00356420 Rroxscaffold_6G00408830
rosa_rugosa	Rorug03G0126700 Rorug04G0105600 Rorug06G0088600.1
rosa_samantha	Rh4AG171800 Rh4BG171000 Rh4BG171100 Rh4CG182600 Rh4DG166200 Rh6AG202600 Rh6DG198100
rosa_wichuraiana	Rw4G014340 Rw6G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AarI	CACCTGC	1 cut(s)	51
Acc16I	TGCGCA	1 cut(s)	1126
Acc36I	ACCTGC	2 cut(s)	51, 1300
AccB1I	GGYRCC	1 cut(s)	796
AciI	CCGC	1 cut(s)	1186
AclWI	GGATC	2 cut(s)	14, 227
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	3 cut(s)	858, 1235, 1317
AcuI	CTGAAG	3 cut(s)	62, 495, 1175
AfaI	GTAC	5 cut(s)	391, 426, 690, 1068, 1132
AfiI	CCNNNNNNNGG	2 cut(s)	29, 711
AgsI	TTSAA	7 cut(s)	70, 294, 605, 659, 857, 950, 1033
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	9 cut(s)	290, 493, 588, 615, 786, 825, 1018, 1159, 1298
AluI	AGCT	9 cut(s)	290, 493, 588, 615, 786, 825, 1018, 1159, 1298
Alw21I	GWGCWC	1 cut(s)	908
Alw26I	GTCTC	3 cut(s)	279, 656, 1033
Alw44I	GTGCAC	1 cut(s)	904
AlwI	GGATC	2 cut(s)	14, 227
AoxI	GGCC	2 cut(s)	573, 693
ApaLI	GTGCAC	1 cut(s)	904
ApeKI	GCWGC	5 cut(s)	556, 612, 1049, 1295, 1298
ApoI	RAATTY	3 cut(s)	858, 1235, 1317
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	94, 1127
AspS9I	GGNCC	2 cut(s)	573, 1010
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	1010
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	908
BaeI	ACNNNNGTAYC	2 cut(s)	672, 705
BanI	GGYRCC	1 cut(s)	796
BbsI	GAAGAC	4 cut(s)	77, 105, 822, 853
Bbv12I	GWGCWC	1 cut(s)	908
BbvI	GCAGC	5 cut(s)	543, 624, 1036, 1285, 1307
BccI	CCATC	2 cut(s)	544, 1208
BceAI	ACGGC	1 cut(s)	1012
BciT130I	CCWGG	1 cut(s)	124
BclI	TGATCA	1 cut(s)	726
BcoDI	GTCTC	3 cut(s)	279, 656, 1033
BfaI	CTAG	2 cut(s)	347, 1277
BfmI	CTRYAG	1 cut(s)	1293
BfoI	RGCGCY	1 cut(s)	95
BfuAI	ACCTGC	2 cut(s)	51, 1300
BglII	AGATCT	1 cut(s)	885
BisI	GCNGC	6 cut(s)	557, 613, 1050, 1187, 1296, 1299
BlsI	GCNGC	6 cut(s)	558, 614, 1051, 1188, 1297, 1300
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	1010
BmgT120I	GGNCC	2 cut(s)	573, 1010
BmiI	GGNNCC	1 cut(s)	798
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	4 cut(s)	139, 168, 274, 902
BpiI	GAAGAC	4 cut(s)	77, 105, 822, 853
Bpu10I	CCTNAGC	1 cut(s)	1014
Bsa29I	ATCGAT	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	24, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 711
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	2 cut(s)	328, 647
Bse21I	CCTNAGG	1 cut(s)	237
Bse3DI	GCAATG	2 cut(s)	48, 747
BseBI	CCWGG	1 cut(s)	124
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	24, 123
BseGI	GGATG	3 cut(s)	119, 154, 247
BseLI	CCNNNNNNNGG	2 cut(s)	29, 711
BseMI	GCAATG	2 cut(s)	48, 747
BseMII	CTCAG	5 cut(s)	200, 251, 377, 591, 1005
BseNI	ACTGG	2 cut(s)	328, 647
BseSI	GKGCMC	1 cut(s)	908
BseXI	GCAGC	5 cut(s)	543, 624, 1036, 1285, 1307
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	575, 695
BshNI	GGYRCC	1 cut(s)	796
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	908
BsiSI	CCGG	1 cut(s)	692
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	2 cut(s)	29, 711
BsmAI	GTCTC	3 cut(s)	279, 656, 1033
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	4 cut(s)	105, 132, 134, 743
BsnI	GGCC	2 cut(s)	575, 695
Bso31I	GGTCTC	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	908
Bsp143I	GATC	5 cut(s)	8, 19, 232, 726, 885
BspACI	CCGC	1 cut(s)	1186
BspANI	GGCC	2 cut(s)	575, 695
BspCNI	CTCAG	5 cut(s)	201, 250, 376, 590, 1006
BspDI	ATCGAT	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	798
BspMAI	CTGCAG	1 cut(s)	1297
BspMI	ACCTGC	2 cut(s)	51, 1300
BspPI	GGATC	2 cut(s)	14, 227
BspT107I	GGYRCC	1 cut(s)	796
BspTNI	GGTCTC	1 cut(s)	656
BsrDI	GCAATG	2 cut(s)	48, 747
BsrFI	RCCGGY	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	328, 647
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	2 cut(s)	24, 123
BssMI	GATC	5 cut(s)	8, 19, 232, 726, 885
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	6 cut(s)	83, 485, 601, 910, 1075, 1138
BstAPI	GCANNNNNTGC	2 cut(s)	749, 1292
BstC8I	GCNNGC	1 cut(s)	920
BstDEI	CTNAG	7 cut(s)	209, 237, 363, 577, 1014, 1182, 1387
BstF5I	GGATG	3 cut(s)	119, 154, 247
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	94, 1127
BstKTI	GATC	5 cut(s)	11, 22, 235, 729, 888
BstMAI	GTCTC	3 cut(s)	279, 656, 1033
BstMBI	GATC	5 cut(s)	8, 19, 232, 726, 885
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	5 cut(s)	749, 1004, 1024, 1292, 1304
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	922
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	1293
BstSLI	GKGCMC	1 cut(s)	908
BstV1I	GCAGC	5 cut(s)	543, 624, 1036, 1285, 1307
BstV2I	GAAGAC	4 cut(s)	77, 105, 822, 853
BstX2I	RGATCY	2 cut(s)	232, 885
BstYI	RGATCY	2 cut(s)	232, 885
Bsu15I	ATCGAT	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	575, 695
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	119, 154, 247
BtsIMutI	CAGTG	5 cut(s)	335, 585, 906, 1080, 1143
BveI	ACCTGC	2 cut(s)	51, 1300
Cac8I	GCNNGC	1 cut(s)	920
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	2 cut(s)	94, 1127
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	573, 1010
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	5 cut(s)	390, 425, 689, 1067, 1131
CviAII	CATG	6 cut(s)	431, 706, 919, 1043, 1122, 1304
CviQI	GTAC	5 cut(s)	390, 425, 689, 1067, 1131
DdeI	CTNAG	7 cut(s)	209, 237, 363, 577, 1014, 1182, 1387
DpnI	GATC	5 cut(s)	10, 21, 234, 728, 887
DpnII	GATC	5 cut(s)	8, 19, 232, 726, 885
EaeI	YGGCCR	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	656
Eco47I	GGWCC	1 cut(s)	1010
Eco57I	CTGAAG	3 cut(s)	62, 495, 1175
Eco81I	CCTNAGG	1 cut(s)	237
EcoRI	GAATTC	2 cut(s)	1235, 1317
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	6 cut(s)	434, 709, 922, 1046, 1125, 1307
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	6 cut(s)	430, 705, 918, 1042, 1121, 1303
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	6 cut(s)	557, 613, 1050, 1187, 1296, 1299
FokI	GGATG	3 cut(s)	106, 161, 254
Fsp4HI	GCNGC	6 cut(s)	557, 613, 1050, 1187, 1296, 1299
FspBI	CTAG	2 cut(s)	347, 1277
FspI	TGCGCA	1 cut(s)	1126
GlaI	GCGC	2 cut(s)	93, 1126
GluI	GCNGC	6 cut(s)	557, 613, 1050, 1187, 1296, 1299
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	575, 695
HapII	CCGG	1 cut(s)	692
HhaI	GCGC	2 cut(s)	94, 1127
Hin1II	CATG	6 cut(s)	434, 709, 922, 1046, 1125, 1307
Hin6I	GCGC	2 cut(s)	92, 1125
HinP1I	GCGC	2 cut(s)	92, 1125
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	7 cut(s)	116, 202, 334, 373, 646, 866, 1178
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	5 cut(s)	425, 583, 637, 906, 1067
Hpy188I	TCNGA	7 cut(s)	42, 138, 148, 279, 726, 731, 931
Hpy8I	GTNNAC	5 cut(s)	425, 583, 637, 906, 1067
HpyAV	CCTTC	3 cut(s)	220, 907, 1168
HpyCH4III	ACNGT	6 cut(s)	83, 485, 601, 910, 1075, 1138
HpyF10VI	GCNNNNNNNGC	5 cut(s)	749, 1004, 1024, 1292, 1304
HpyF3I	CTNAG	7 cut(s)	209, 237, 363, 577, 1014, 1182, 1387
Hsp92II	CATG	6 cut(s)	434, 709, 922, 1046, 1125, 1307
HspAI	GCGC	2 cut(s)	92, 1125
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	5 cut(s)	8, 19, 232, 726, 885
Lsp1109I	GCAGC	5 cut(s)	543, 624, 1036, 1285, 1307
LweI	GCATC	4 cut(s)	139, 168, 274, 902
MaeI	CTAG	2 cut(s)	347, 1277
MaeIII	GTNAC	2 cut(s)	595, 1240
MalI	GATC	5 cut(s)	10, 21, 234, 728, 887
MboI	GATC	5 cut(s)	8, 19, 232, 726, 885
MboII	GAAGA	6 cut(s)	55, 82, 110, 501, 822, 858
MflI	RGATCY	2 cut(s)	232, 885
MhlI	GDGCHC	1 cut(s)	908
MluCI	AATT	7 cut(s)	774, 858, 987, 1055, 1095, 1235, 1317
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	8 cut(s)	246, 326, 586, 730, 810, 849, 1039, 1211
Mph1103I	ATGCAT	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	5 cut(s)	680, 900, 1098, 1310, 1347
MspA1I	CMGCKG	1 cut(s)	1298
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	1 cut(s)	124
Mva1269I	GAATGC	4 cut(s)	105, 132, 134, 743
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	5 cut(s)	749, 1004, 1024, 1292, 1304
NdeII	GATC	5 cut(s)	8, 19, 232, 726, 885
NlaIII	CATG	6 cut(s)	434, 709, 922, 1046, 1125, 1307
NlaIV	GGNNCC	1 cut(s)	798
NmuCI	GTSAC	1 cut(s)	595
NsbI	TGCGCA	1 cut(s)	1126
NsiI	ATGCAT	1 cut(s)	134
NspI	RCATGY	1 cut(s)	922
PaeI	GCATGC	1 cut(s)	922
PagI	TCATGA	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	51
PctI	GAATGC	4 cut(s)	105, 132, 134, 743
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	6 cut(s)	116, 202, 373, 646, 866, 1178
PkrI	GCNGC	6 cut(s)	558, 614, 1051, 1188, 1297, 1300
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	798
PspPI	GGNCC	2 cut(s)	573, 1010
PstI	CTGCAG	1 cut(s)	1297
PsuI	RGATCY	2 cut(s)	232, 885
PvuI	CGATCG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	1298
RsaI	GTAC	5 cut(s)	391, 426, 690, 1068, 1132
RsaNI	GTAC	5 cut(s)	390, 425, 689, 1067, 1131
SaqAI	TTAA	5 cut(s)	680, 900, 1098, 1310, 1347
SatI	GCNGC	6 cut(s)	557, 613, 1050, 1187, 1296, 1299
Sau3AI	GATC	5 cut(s)	8, 19, 232, 726, 885
Sau96I	GGNCC	2 cut(s)	573, 1010
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	908
SfaNI	GCATC	4 cut(s)	139, 168, 274, 902
SfcI	CTRYAG	1 cut(s)	1293
SinI	GGWCC	1 cut(s)	1010
SphI	GCATGC	1 cut(s)	922
Sse9I	AATT	7 cut(s)	774, 858, 987, 1055, 1095, 1235, 1317
SsiI	CCGC	1 cut(s)	1186
SspMI	CTAG	2 cut(s)	347, 1277
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	6 cut(s)	83, 485, 601, 910, 1075, 1138
TaqI	TCGA	2 cut(s)	162, 782
TasI	AATT	7 cut(s)	774, 858, 987, 1055, 1095, 1235, 1317
TatI	WGTACW	3 cut(s)	389, 424, 1066
TauI	GCSGC	1 cut(s)	1189
TfiI	GAWTC	6 cut(s)	116, 202, 373, 646, 866, 1178
Tru1I	TTAA	5 cut(s)	680, 900, 1098, 1310, 1347
Tru9I	TTAA	5 cut(s)	680, 900, 1098, 1310, 1347
TscAI	CASTG	5 cut(s)	335, 585, 913, 1080, 1143
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	5 cut(s)	556, 612, 1049, 1295, 1298
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	9 cut(s)	108, 180, 419, 736, 779, 879, 1183, 1272, 1371
TspRI	CASTG	5 cut(s)	335, 585, 913, 1080, 1143
VneI	GTGCAC	1 cut(s)	904
VpaK11BI	GGWCC	1 cut(s)	1010
XapI	RAATTY	3 cut(s)	858, 1235, 1317
XbaI	TCTAGA	1 cut(s)	346
XceI	RCATGY	1 cut(s)	922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	991
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	2 cut(s)	347, 1277
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.