Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003946

Physical Location & Seq

Genomic Coordinates Forward (+)

36300663 .. 36301344

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCTAGAATGCCTCAAGTGTCTGATGACAAGGTCTCCTGATGAACCTTCACTGAGTAACTTTCTCAAGAACATTGCAAAAAGCAAGTGTTTGAAGACCCAGAATGGTTACAAATTGCCAGAAGAATGTGTTCTCTTTGATCCTGCCTGGGAAGGTATTCTGAAGCCATCAGATGCACCAACCATTGATGAAAACTTTTACAGAACTGACATTTCTGTATACAAGAAGCAGTTAAGAGATATTGGCGTGAAGGTGGATTCTTTGGATGATTGTGTACTTCATGATAACAAACATGTGTTTGGATCCCGCTTGTTTTCTCTTGACGAGTTTTACAAGAAAGAGCTTCTCCCCCTTTTCTCTTCGGCCTTTGGAGTTGCTGAAAACCCTACAACCAATGATTACTTGGAGCTATGGAACAGCTGGGCTATGAGGGTTAACTATCAAGTTACTCTTCTGGAGTGTAGCTCTTTTTGGGAACATGTAGTAGACAACTGGAATCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

19.5

Weight (kDa)

4.89

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003946)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12160 FvH4_4g12170
malus_domestica	MD08G1075700.v1.1 MD08G1075800.v1.1 MD08G1076000.v1.1 MD15G1063200.v1.1
prunus_persica	Prupe.1G417200_v2.0.a1
pyrus_communis	pycom08g06260 pycom15g05980
rosa_chinensis	RchiOBHm_Chr4g0412151 RchiOBHm_Chr6g0275121
rosa_laevigata	RLG00000008313 RLG00000008314 RLG00000013495 RLG00000024070
rosa_multiflora	Rmu_sc0003510.1_g000026 Rmu_sc0004221.1_g000010 Rmu_sc0006012.1_g000009 Rmu_sc0011581.1_g000007 Rmu_ssc0000041.1_g000002
rosa_roxburghii	Rroxscaffold_5G00356420 Rroxscaffold_6G00408830
rosa_rugosa	Rorug03G0126700 Rorug04G0105600 Rorug06G0088600.1
rosa_samantha	Rh4AG171800 Rh4BG171000 Rh4BG171100 Rh4CG182600 Rh4DG166200 Rh6AG202600 Rh6DG198100
rosa_wichuraiana	Rw4G014340 Rw6G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	219, 486
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	3 cut(s)	134, 297, 310
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	276
AflIII	ACRYGT	2 cut(s)	292, 478
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	4 cut(s)	343, 409, 420, 465
AluI	AGCT	4 cut(s)	343, 409, 420, 465
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	3 cut(s)	134, 297, 310
AoxI	GGCC	1 cut(s)	363
Asp700I	GAANNNNTTC	2 cut(s)	129, 156
BamHI	GGATCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	101
BccI	CCATC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	5
Bme1390I	CCNGG	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	497
BseYI	CCCAGC	1 cut(s)	420
BshFI	GGCC	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	365
Bso31I	GGTCTC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	139, 302
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	3 cut(s)	134, 297, 310
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	139, 302
BssNAI	GTATAC	1 cut(s)	220
Bst1107I	GTATAC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	148
Bst6I	CTCTTC	2 cut(s)	364, 456
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	142, 305
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	139, 302
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	2 cut(s)	296, 482
BstSCI	CCNGG	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BstZ17I	GTATAC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	50
CciI	TCATGA	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	3 cut(s)	281, 293, 479
CviJI	RGCY	7 cut(s)	166, 343, 365, 409, 420, 425, 465
CviKI_1	RGCY	7 cut(s)	166, 343, 365, 409, 420, 425, 465
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	141, 304
DpnII	GATC	2 cut(s)	139, 302
Eam1104I	CTCTTC	2 cut(s)	364, 456
EarI	CTCTTC	2 cut(s)	364, 456
Eco31I	GGTCTC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	146
FaeI	CATG	3 cut(s)	284, 296, 482
FaiI	YATR	6 cut(s)	220, 282, 294, 412, 428, 480
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	3 cut(s)	280, 292, 478
FauI	CCCGC	1 cut(s)	314
FblI	GTMKAC	2 cut(s)	219, 486
FokI	GGATG	1 cut(s)	278
FspBI	CTAG	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	365
Hin1II	CATG	3 cut(s)	284, 296, 482
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	2 cut(s)	257, 496
HpaI	GTTAAC	1 cut(s)	436
Hpy166II	GTNNAC	4 cut(s)	220, 275, 436, 487
Hpy188I	TCNGA	3 cut(s)	24, 162, 172
Hpy188III	TCNNGA	6 cut(s)	38, 67, 281, 320, 455, 500
Hpy8I	GTNNAC	4 cut(s)	220, 275, 436, 487
HpyAV	CCTTC	3 cut(s)	57, 146, 244
HpyCH4V	TGCA	2 cut(s)	77, 176
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	284, 296, 482
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	139, 302
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	9 cut(s)	51, 113, 132, 133, 156, 160, 406, 440, 478
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	3 cut(s)	56, 107, 445
MalI	GATC	2 cut(s)	141, 304
MboI	GATC	2 cut(s)	139, 302
MboII	GAAGA	4 cut(s)	106, 134, 351, 443
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	2 cut(s)	23, 423
MroXI	GAANNNNTTC	2 cut(s)	129, 156
MseI	TTAA	2 cut(s)	233, 435
MspA1I	CMGCKG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	148
NdeII	GATC	2 cut(s)	139, 302
NlaIII	CATG	3 cut(s)	284, 296, 482
NlaIV	GGNNCC	1 cut(s)	304
NspI	RCATGY	2 cut(s)	296, 482
PagI	TCATGA	1 cut(s)	280
PciI	ACATGT	2 cut(s)	292, 478
PctI	GAATGC	1 cut(s)	14
PdmI	GAANNNNTTC	2 cut(s)	129, 156
PfeI	GAWTC	2 cut(s)	257, 496
PflFI	GACNNNGTC	1 cut(s)	31
PscI	ACATGT	2 cut(s)	292, 478
Psp6I	CCWGG	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	420
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	233, 435
Sau3AI	GATC	2 cut(s)	139, 302
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	8 cut(s)	35, 49, 157, 255, 345, 411, 422, 467
SfaNI	GCATC	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	14, 65
SmoI	CTYRAG	2 cut(s)	14, 65
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	1 cut(s)	307
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	146
TasI	AATT	1 cut(s)	113
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	257, 496
Tru1I	TTAA	2 cut(s)	233, 435
Tru9I	TTAA	2 cut(s)	233, 435
TscAI	CASTG	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	57, 204, 269
TspRI	CASTG	1 cut(s)	57
Tth111I	GACNNNGTC	1 cut(s)	31
XceI	RCATGY	2 cut(s)	296, 482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmiI	GTMKAC	2 cut(s)	219, 486
XmnI	GAANNNNTTC	2 cut(s)	129, 156
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.