Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003946

Physical Location & Seq

Genomic Coordinates Reverse (-)

16350618 .. 16353569

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0105600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCTCGGCCGGAGCTTCAAAACCCGCCGGAGATATTCTACAATGACGACGAAGCACGCAAGTACACTCGCAACTCCCGCATCATGGAGATTCAGTCCGAGCTCTCCGAGCGGGCCCTCGAGCTTCTCGCTCTGCCGGAAGATGACGCCCCCAGGTTGCTTCTCGACATCGGTTGTGGCTCTGGGCTTAGCGGTGAGACCTTGTCCGAAAGTGGGCATCAGTGGATTGGTTTGGATATTTCCCAATCAATGCTTGATGTTGCACTGGAAAATGAGGTTAAGGGTGACCTGTTGCTTGCGGATATGGGCCAGGGGTTAGGACTTCGTTCCGGAGTTATTGATGGAGCCATAAGTATCTCAGCTGTTCAGTGGTTGTGCAATGCTGACAAATCCTCACATAATCCACGATTAAGATTGAAGGCTTTCTTTGGGTCATTGTACAGATGCTTAGCTAGGGGAGCAAAAGCTGCATTTCAAATGTATCCAGAAAATCTAGACCAGCGGGAATTGATTGTGAGTTCTGCAATGCGTGCTGGATTTTCTGGTGGTATCGTCGTTGATTATCCCAACAGTTCCAAGAAAAGAAAAGAATACCTAGTCCTCACGTGTGGTCCACCATCTGTCAATACATCGGTTCCTGAGGGTAAAAGTGAAGATGGAGATAGTTCCTTTGATGACGATAGTAGTGGAGATGAAGAAAATCAGACAGTTTCCATTTCAGACAGGCACAGGCCCAGGAAAAAGCAGAGAATAACAAAGAAAGGTAAGGGGAGAGATTGGATACTGAAGAAGAAGGAACAGATGAGAAGAAAAGGAAATGTTGTTCCTCCAGACACAAAGTACACTGCTCGGAAACGAAAGGCTCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

32.29

Weight (kDa)

8.56

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	55 - 156	1.3e-09	Methyltransferase domain
Methyltransf_25	PF13649	55 - 129	2.4e-08	Methyltransferase domain
WBS_methylT	PF12589	201 - 288	2e-24	Methyltransferase involved in Williams-Beuren syndrome

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003946)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12160 FvH4_4g12170
malus_domestica	MD08G1075700.v1.1 MD08G1075800.v1.1 MD08G1076000.v1.1 MD15G1063200.v1.1
prunus_persica	Prupe.1G417200_v2.0.a1
pyrus_communis	pycom08g06260 pycom15g05980
rosa_chinensis	RchiOBHm_Chr4g0412151 RchiOBHm_Chr6g0275121
rosa_laevigata	RLG00000008313 RLG00000008314 RLG00000013495 RLG00000024070
rosa_multiflora	Rmu_sc0003510.1_g000026 Rmu_sc0004221.1_g000010 Rmu_sc0006012.1_g000009 Rmu_sc0011581.1_g000007 Rmu_ssc0000041.1_g000002
rosa_roxburghii	Rroxscaffold_5G00356420 Rroxscaffold_6G00408830
rosa_rugosa	Rorug03G0126700 Rorug04G0105600 Rorug06G0088600.1
rosa_samantha	Rh4AG171800 Rh4BG171000 Rh4BG171100 Rh4CG182600 Rh4DG166200 Rh6AG202600 Rh6DG198100
rosa_wichuraiana	Rw4G014340 Rw6G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	112
AccIII	TCCGGA	1 cut(s)	329
AciI	CCGC	6 cut(s)	26, 79, 112, 192, 299, 502
AcoI	YGGCCR	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	806
AcvI	CACGTG	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	3 cut(s)	65, 440, 842
AfiI	CCNNNNNNNGG	2 cut(s)	85, 213
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	3 cut(s)	20, 418, 476
AjnI	CCWGG	3 cut(s)	152, 309, 734
AloI	GAACNNNNNNTCC	2 cut(s)	807, 839
AluBI	AGCT	6 cut(s)	16, 103, 124, 362, 452, 467
AluI	AGCT	6 cut(s)	16, 103, 124, 362, 452, 467
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	9, 191
Ama87I	CYCGRG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	329
AoxI	GGCC	4 cut(s)	8, 114, 307, 731
ApaI	GGGCCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	5 cut(s)	114, 115, 307, 611, 732
AsuHPI	GGTGA	2 cut(s)	206, 296
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	611
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	118
BanII	GRGCYC	2 cut(s)	105, 118
BbrPI	CACGTG	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	335, 625, 650
BciT130I	CCWGG	3 cut(s)	154, 311, 736
BciVI	GTATCC	2 cut(s)	492, 774
BcoDI	GTCTC	2 cut(s)	9, 191
BfaI	CTAG	3 cut(s)	453, 494, 596
BfuI	GTATCC	2 cut(s)	492, 774
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	2 cut(s)	188, 448
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	3 cut(s)	154, 311, 736
Bme18I	GGWCC	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	5 cut(s)	114, 115, 307, 611, 732
BmiI	GGNNCC	3 cut(s)	116, 346, 636
BmrFI	CCNGG	3 cut(s)	154, 311, 736
BmsI	GCATC	3 cut(s)	90, 226, 434
BpmI	CTGGAG	1 cut(s)	813
Bpu1102I	GCTNAGC	2 cut(s)	188, 448
BsaAI	YACGTR	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	152, 310, 734
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 213
Bse1I	ACTGG	1 cut(s)	270
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	2 cut(s)	385, 531
BseAI	TCCGGA	1 cut(s)	329
BseBI	CCWGG	3 cut(s)	154, 311, 736
BseDI	CCNNGG	3 cut(s)	152, 310, 734
BseLI	CCNNNNNNNGG	2 cut(s)	85, 213
BseMI	GCAATG	2 cut(s)	385, 531
BseMII	CTCAG	2 cut(s)	372, 630
BseNI	ACTGG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	118
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	454
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	4 cut(s)	10, 116, 309, 733
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	4 cut(s)	11, 29, 137, 330
BslI	CCNNNNNNNGG	2 cut(s)	85, 213
BsmAI	GTCTC	2 cut(s)	9, 191
BsnI	GGCC	4 cut(s)	10, 116, 309, 733
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	119
Bsp120I	GGGCCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	105, 118
Bsp13I	TCCGGA	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	438
Bsp1720I	GCTNAGC	2 cut(s)	188, 448
BspACI	CCGC	6 cut(s)	26, 79, 112, 192, 299, 502
BspANI	GGCC	4 cut(s)	10, 116, 309, 733
BspCNI	CTCAG	2 cut(s)	371, 631
BspEI	TCCGGA	1 cut(s)	329
BspLI	GGNNCC	3 cut(s)	116, 346, 636
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	2 cut(s)	385, 531
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	152, 310, 734
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	154, 311, 736
Bst4CI	ACNGT	2 cut(s)	572, 709
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	2 cut(s)	467, 530
BstAUI	TGTACA	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	606
BstC8I	GCNNGC	5 cut(s)	58, 114, 297, 531, 865
BstDEI	CTNAG	4 cut(s)	188, 358, 448, 639
BstEII	GGTNACC	1 cut(s)	284
BstMAI	GTCTC	2 cut(s)	9, 191
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 109, 458, 467, 530
BstNI	CCWGG	3 cut(s)	154, 311, 736
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	152, 309, 734
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	454
BstZI	CGGCCG	1 cut(s)	8
Bsu36I	CCTNAGG	1 cut(s)	639
BsuI	GTATCC	2 cut(s)	492, 774
BsuRI	GGCC	4 cut(s)	10, 116, 309, 733
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	4 cut(s)	227, 263, 374, 843
Cac8I	GCNNGC	5 cut(s)	58, 114, 297, 531, 865
Cfr13I	GGNCC	5 cut(s)	114, 115, 307, 611, 732
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	64, 439, 841
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	3 cut(s)	64, 439, 841
DdeI	CTNAG	4 cut(s)	188, 358, 448, 639
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	8
Eco24I	GRGCYC	2 cut(s)	105, 118
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	611
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	806
Eco72I	CACGTG	1 cut(s)	606
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	152, 309, 734
EcoT38I	GRGCYC	2 cut(s)	105, 118
FaeI	CATG	1 cut(s)	88
FaiI	YATR	4 cut(s)	86, 305, 350, 399
FalI	AAGNNNNNCTT	3 cut(s)	410, 442, 851
FatI	CATG	1 cut(s)	84
FauI	CCCGC	4 cut(s)	33, 86, 105, 495
Fnu4HI	GCNGC	1 cut(s)	468
FriOI	GRGCYC	2 cut(s)	105, 118
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	3 cut(s)	453, 494, 596
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	10, 116, 309, 733
HapII	CCGG	4 cut(s)	11, 29, 137, 330
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	4 cut(s)	11, 29, 137, 330
HphI	GGTGA	2 cut(s)	206, 296
Hpy166II	GTNNAC	3 cut(s)	66, 614, 843
Hpy188I	TCNGA	6 cut(s)	100, 109, 208, 705, 721, 852
Hpy188III	TCNNGA	6 cut(s)	164, 330, 485, 494, 638, 830
Hpy8I	GTNNAC	3 cut(s)	66, 614, 843
Hpy99I	CGWCG	2 cut(s)	53, 557
HpyAV	CCTTC	2 cut(s)	412, 787
HpyCH4III	ACNGT	2 cut(s)	572, 709
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	4 cut(s)	263, 378, 470, 524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 109, 458, 467, 530
HpyF3I	CTNAG	4 cut(s)	188, 358, 448, 639
HpySE526I	ACGT	1 cut(s)	605
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	88
Kpn2I	TCCGGA	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	13, 344, 458
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	3 cut(s)	90, 226, 434
MaeI	CTAG	3 cut(s)	453, 494, 596
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	1 cut(s)	284
MbiI	CCGCTC	1 cut(s)	112
MboII	GAAGA	6 cut(s)	152, 665, 707, 799, 802, 819
MhlI	GDGCHC	2 cut(s)	105, 118
MluCI	AATT	1 cut(s)	506
MnlI	CCTC	6 cut(s)	128, 268, 403, 611, 634, 837
MroI	TCCGGA	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	279, 410
MspA1I	CMGCKG	2 cut(s)	362, 502
MspI	CCGG	4 cut(s)	11, 29, 137, 330
MspR9I	CCNGG	3 cut(s)	154, 311, 736
MvaI	CCWGG	3 cut(s)	154, 311, 736
MwoI	GCNNNNNNNGC	5 cut(s)	78, 109, 458, 467, 530
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	116, 346, 636
NmuCI	GTSAC	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	469
PmaCI	CACGTG	1 cut(s)	606
PmlI	CACGTG	1 cut(s)	606
Ppu21I	YACGTR	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	3 cut(s)	152, 309, 734
PspCI	CACGTG	1 cut(s)	606
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	3 cut(s)	152, 309, 734
PspN4I	GGNNCC	3 cut(s)	116, 346, 636
PspOMI	GGGCCC	1 cut(s)	114
PspPI	GGNCC	5 cut(s)	114, 115, 307, 611, 732
PspXI	VCTCGAGB	1 cut(s)	119
PsyI	GACNNNGTC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	65, 440, 842
RsaNI	GTAC	3 cut(s)	64, 439, 841
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	279, 410
SatI	GCNGC	1 cut(s)	468
Sau96I	GGNCC	5 cut(s)	114, 115, 307, 611, 732
ScrFI	CCNGG	3 cut(s)	154, 311, 736
SduI	GDGCHC	2 cut(s)	105, 118
SfaNI	GCATC	3 cut(s)	90, 226, 434
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	611
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	6 cut(s)	26, 79, 112, 192, 299, 502
SspMI	CTAG	3 cut(s)	453, 494, 596
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	152, 309, 734
TaaI	ACNGT	2 cut(s)	572, 709
TaiI	ACGT	1 cut(s)	608
TaqI	TCGA	2 cut(s)	120, 165
TasI	AATT	1 cut(s)	506
TatI	WGTACW	3 cut(s)	63, 438, 840
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	279, 410
Tru9I	TTAA	2 cut(s)	279, 410
TscAI	CASTG	4 cut(s)	227, 270, 374, 850
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	708
TspRI	CASTG	4 cut(s)	227, 270, 374, 850
Tth111I	GACNNNGTC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	611
XbaI	TCTAGA	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	3 cut(s)	453, 494, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.