RchiOBHm_Chr6g0275121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003946
Physical Location & Seq
Forward (+)
36772616 .. 36773689
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24681

Sequence Viewer

Length: 1074 bp
ATGCCTGCAATTGATGAAATGTATTACAAGAATGAAATTAGGCATTTCACTGAAGAATTGAAAGCAATGGGTGTGGTTGATAATGCCACAGCAACTGAGAAGATTGCTGCTCAGTTCAGTTCTCTATTGTCTTCTTCTAACTGGCTTCCTGCAAATGTGATGTCACTGTTAGGTTGCATCAGAGAATTGAGTCAAACTATGTTTTTACATCACCCTGAACTAAAGTGGTTGCTTTGTGAGAAGTGGTTGAAAACACGCCATGGCTATAAGGGTCCTTGTGAATCAATAATTTTCAGCTCTCAATGGGGATCAATCTCGTTGTTTGTTGATCTTCCACTCATAGACGATGTATATTATGGTATTGGCATATATAAATACAGAGATGAATTGGAGAAATTGGGTGTCATCACGGATTTTGAAGGAGGAGCGGTGATTGTAGCTAAAGGTCTTTCCTGTCCCATCGAAGATGAACTAATTACTGCAGATGGCATTTTATCATTGCTAGAATGCCTCAAGTGTCTGATGACAAGGTCTCCTGATGAACCTTCACTGAGTAACTTTCTCAAGAACATTGCAAAAACCAAGTGTTTGAAGACCCAGAATGGTTACAAATTGCCAGAAGAATGTGTTCTCTTTGATCCTGCCTGGGAAGGTATTCTGAAGCCATCAGTTGCACCAACCATTGATGAAAACTTTTACAGAACTGACATTTCTGTATACAAGAAGCAGTTAAGAGATATTGGCGTGAAGGTATATTCTTTGGATGTTTGTTCTCTTCTTTCTTGGATTCTTTTTTCGCTGACTGAAACAACTTCAATAACAAGGATTTATAGCTTCCTCAACAAGTTCCAATGGAATCCGGAAGTTCTAGATAACCTTATGTCTCAGGTGTGGATACCTACCCCAAAGGGTACTGGCAAGTGGATCAATTCTCAGGATTGTGTACTTCATGATAACAAGCATGTGTTTGGATCCCGCTTGTTTTCTCTTGACGAGTTTTACAAGAAAGAGCTTCTCCCCCTTTTCTCTTCGGCCTTTGGAGTTACTTGGAGCTATGGAACAGCTGGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

40.52

Weight (kDa)

5.4

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 717
AccIII TCCGGA 1 cut(s) 859
AciI CCGC 2 cut(s) 428, 976
AclWI GGATC 5 cut(s) 316, 632, 932, 966, 979
AcuI CTGAAG 2 cut(s) 72, 680
AfaI GTAC 2 cut(s) 913, 945
AgsI TTSAA 5 cut(s) 61, 250, 419, 592, 816
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 6 cut(s) 297, 440, 834, 1012, 1053, 1064
AluI AGCT 6 cut(s) 297, 440, 834, 1012, 1053, 1064
Alw26I GTCTC 2 cut(s) 537, 888
AlwI GGATC 5 cut(s) 316, 632, 932, 966, 979
AlwNI CAGNNNCTG 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 859
AoxI GGCC 1 cut(s) 1032
ApeKI GCWGC 1 cut(s) 107
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp700I GAANNNNTTC 2 cut(s) 627, 654
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 203, 442
AvaII GGWCC 1 cut(s) 272
BamHI GGATCC 1 cut(s) 971
BbsI GAAGAC 2 cut(s) 123, 599
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 467, 479, 673
BciT130I CCWGG 1 cut(s) 646
BciVI GTATCC 1 cut(s) 888
BcoDI GTCTC 2 cut(s) 537, 888
BfaI CTAG 2 cut(s) 503, 869
BfmI CTRYAG 1 cut(s) 480
BfuI GTATCC 1 cut(s) 888
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 273, 973
BmrFI CCNGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 123, 599
BpuEI CTTGAG 2 cut(s) 497, 548
BsaI GGTCTC 1 cut(s) 537
BsaJI CCNNGG 2 cut(s) 259, 645
BsaWI WCCGGW 1 cut(s) 859
BsaXI ACNNNNNCTCC 4 cut(s) 414, 444, 517, 547
Bse1I ACTGG 2 cut(s) 146, 919
Bse3DI GCAATG 3 cut(s) 72, 497, 570
BseAI TCCGGA 1 cut(s) 859
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 2 cut(s) 259, 645
BseGI GGATG 1 cut(s) 769
BseMI GCAATG 3 cut(s) 72, 497, 570
BseMII CTCAG 5 cut(s) 87, 125, 542, 899, 947
BseNI ACTGG 2 cut(s) 146, 919
BseRI GAGGAG 1 cut(s) 438
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 1064
BshFI GGCC 1 cut(s) 1034
BsiSI CCGG 1 cut(s) 860
BslFI GGGAC 1 cut(s) 441
BsmAI GTCTC 2 cut(s) 537, 888
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 512
BsnI GGCC 1 cut(s) 1034
Bso31I GGTCTC 1 cut(s) 537
Bsp13I TCCGGA 1 cut(s) 859
Bsp143I GATC 5 cut(s) 308, 328, 637, 924, 971
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 2 cut(s) 428, 976
BspANI GGCC 1 cut(s) 1034
BspCNI CTCAG 5 cut(s) 88, 124, 543, 898, 946
BspEI TCCGGA 1 cut(s) 859
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 2 cut(s) 273, 973
BspMAI CTGCAG 1 cut(s) 484
BspPI GGATC 5 cut(s) 316, 632, 932, 966, 979
BspTNI GGTCTC 1 cut(s) 537
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 3 cut(s) 72, 497, 570
BsrI ACTGG 2 cut(s) 146, 919
BssECI CCNNGG 2 cut(s) 259, 645
BssMI GATC 5 cut(s) 308, 328, 637, 924, 971
BssNAI GTATAC 1 cut(s) 718
BssT1I CCWWGG 1 cut(s) 259
Bst1107I GTATAC 1 cut(s) 718
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 1 cut(s) 168
Bst6I CTCTTC 2 cut(s) 780, 1033
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 5 cut(s) 96, 111, 551, 885, 933
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 769
BstKTI GATC 5 cut(s) 311, 331, 640, 927, 974
BstMAI GTCTC 2 cut(s) 537, 888
BstMBI GATC 5 cut(s) 308, 328, 637, 924, 971
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 965
BstSCI CCNGG 1 cut(s) 644
BstSFI CTRYAG 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 2 cut(s) 123, 599
BstX2I RGATCY 1 cut(s) 971
BstYI RGATCY 1 cut(s) 971
BstZ17I GTATAC 1 cut(s) 718
BsuI GTATCC 1 cut(s) 888
BsuRI GGCC 1 cut(s) 1034
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 769
BtsIMutI CAGTG 3 cut(s) 48, 164, 548
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 949
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 912, 944
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 3 cut(s) 260, 950, 962
CviQI GTAC 2 cut(s) 912, 944
DdeI CTNAG 5 cut(s) 96, 111, 551, 885, 933
DpnI GATC 5 cut(s) 310, 330, 639, 926, 973
DpnII GATC 5 cut(s) 308, 328, 637, 924, 971
Eam1104I CTCTTC 2 cut(s) 780, 1033
EarI CTCTTC 2 cut(s) 780, 1033
Eco130I CCWWGG 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 72, 680
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 3 cut(s) 263, 953, 965
FaqI GGGAC 1 cut(s) 441
FatI CATG 3 cut(s) 259, 949, 961
FauI CCCGC 1 cut(s) 983
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 776
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 2 cut(s) 503, 869
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 1068
HaeIII GGCC 1 cut(s) 1034
HapII CCGG 1 cut(s) 860
Hin1II CATG 3 cut(s) 263, 953, 965
HinfI GANTC 4 cut(s) 190, 281, 787, 856
HpaII CCGG 1 cut(s) 860
HphI GGTGA 2 cut(s) 203, 442
Hpy166II GTNNAC 2 cut(s) 718, 944
Hpy188I TCNGA 3 cut(s) 182, 522, 660
Hpy188III TCNNGA 7 cut(s) 536, 565, 860, 869, 935, 950, 989
Hpy8I GTNNAC 2 cut(s) 718, 944
HpyAV CCTTC 4 cut(s) 413, 555, 644, 742
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 6 cut(s) 8, 152, 177, 482, 575, 674
HpyF3I CTNAG 5 cut(s) 96, 111, 551, 885, 933
Hsp92II CATG 3 cut(s) 263, 953, 965
Kpn2I TCCGGA 1 cut(s) 859
Kzo9I GATC 5 cut(s) 308, 328, 637, 924, 971
LmnI GCTCC 2 cut(s) 425, 1050
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 186
MaeI CTAG 2 cut(s) 503, 869
MaeIII GTNAC 4 cut(s) 162, 554, 605, 1042
MalI GATC 5 cut(s) 310, 330, 639, 926, 973
MbiI CCGCTC 1 cut(s) 428
MboI GATC 5 cut(s) 308, 328, 637, 924, 971
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 971
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 3 cut(s) 416, 521, 848
MroI TCCGGA 1 cut(s) 859
MroXI GAANNNNTTC 2 cut(s) 627, 654
MseI TTAA 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 1064
MspI CCGG 1 cut(s) 860
MspR9I CCNGG 1 cut(s) 646
MunI CAATTG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 512
MvaI CCWGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 259
NdeII GATC 5 cut(s) 308, 328, 637, 924, 971
NlaIII CATG 3 cut(s) 263, 953, 965
NlaIV GGNNCC 2 cut(s) 273, 973
NmuCI GTSAC 1 cut(s) 162
NspI RCATGY 1 cut(s) 965
PagI TCATGA 1 cut(s) 949
PctI GAATGC 1 cut(s) 512
PdmI GAANNNNTTC 2 cut(s) 627, 654
PfeI GAWTC 3 cut(s) 281, 787, 856
PflFI GACNNNGTC 1 cut(s) 529
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 644
PspFI CCCAGC 1 cut(s) 1064
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 273, 973
PspPI GGNCC 1 cut(s) 272
PspPPI RGGWCCY 1 cut(s) 272
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 971
PsyI GACNNNGTC 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 2 cut(s) 913, 945
RsaNI GTAC 2 cut(s) 912, 944
SaqAI TTAA 1 cut(s) 731
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 5 cut(s) 308, 328, 637, 924, 971
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 646
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 512, 563
SmoI CTYRAG 2 cut(s) 512, 563
SsiI CCGC 2 cut(s) 428, 976
SspMI CTAG 2 cut(s) 503, 869
StyD4I CCNGG 1 cut(s) 644
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 462
TatI WGTACW 1 cut(s) 943
TfiI GAWTC 3 cut(s) 281, 787, 856
Tru1I TTAA 1 cut(s) 731
Tru9I TTAA 1 cut(s) 731
TscAI CASTG 3 cut(s) 55, 171, 555
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 7 cut(s) 30, 48, 399, 483, 555, 702, 938
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 3 cut(s) 55, 171, 555
Tth111I GACNNNGTC 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 272
XbaI TCTAGA 1 cut(s) 868
XceI RCATGY 1 cut(s) 965
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 2 cut(s) 627, 654
XspI CTAG 2 cut(s) 503, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.