Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004846

Physical Location & Seq

Genomic Coordinates Reverse (-)

6014977 .. 6015831

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGCTTTCACCGCCGGCTTTCACCAAGTTGGCAACAACTCATATTGCTTTGCCATTTGGTTCTCCGAGCCTTCACCCTCCGTCCGCCGACAAAATCGCACCGTTATCTGGACGGCCAATATCAACCATCCAGTCAACGGTAAACGTTCCAAGCTCCCCGTCCTCAAAACTGGGTATCTCAACTGATGCCGGAACGTCCACAGTTTGGGCCACCACCACCACTTCACTCTCACCGATCTTTGATTCCCCAACTGACACCTTTTTCCTCCAACCCTTCGCCAGACATGCAATGCTTGTATCGGCAAGAAGCCACAGCAACTTCTCCACGCTTTTCGAGGGTTTTGAGATTTCCAGCGCCTATTGGCCCGACCCTTCTCGCGTGAGCTGGGACAATGCAAGGTCCACCTACAACACCACTAGAACAGCCATACTGGATTCGTTAGGCAGCTTTGTGTCATCGGACAACTCGACTTTTGAGTCAACTGATTACGGTGTGAGGTTGCAGAGAAGATTGAGGATTGATATTGATGGCAATGTTCGATTGTATAGTCGGGAAAGGGCAGGAGAAAAATGGGTGGTTTCAAGGGAGGCCATTTCGGATCCATGCACGGTTCATGGGATTTGTGGGGCTAACACAGTGCAGCTACGCACAGTTTTGGTAGGAAATGCCCATGGGTGGTCTAAAGCGTGCTGGCTTCTTGTAATTTTCTTTCCATCATGTTTACTTGTGTTTTCAAACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

249

Amino Acids

27.02

Weight (kDa)

7.01

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004846)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33830 FvH4_2g33840 FvH4_2g33850
malus_domestica	MD15G1076500.v1.1
prunus_persica	Prupe.1G429800_v2.0.a1 Prupe.1G429900_v2.0.a1
pyrus_communis	pycom08g07440
rosa_chinensis	RchiOBHm_Chr6g0308701 RchiOBHm_Chr6g0308721
rosa_laevigata	RLG00000010627 RLG00000010628
rosa_multiflora	Rmu_co8093658.1_g000001 Rmu_sc0000871.1_g000016 Rmu_sc0000871.1_g000018 Rmu_sc0017014.1_g000001 Rmu_sc0017015.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160000 Rroxscaffold_7G00160010
rosa_rugosa	Rorug06G0367800
rosa_samantha	Rh6AG478400 Rh6AG478800 Rh6BG488300 Rh6BG488400 Rh6CG492900 Rh6CG493200 Rh6CG493400 Rh6CG493600 Rh6CG493700 Rh6DG479200 Rh6DG479300
rosa_wichuraiana	Rw6G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	14, 87
AclI	AACGTT	1 cut(s)	147
AclWI	GGATC	2 cut(s)	596, 609
AcoI	YGGCCR	1 cut(s)	116
AfiI	CCNNNNNNNGG	4 cut(s)	110, 139, 207, 678
AgsI	TTSAA	2 cut(s)	585, 738
AluBI	AGCT	5 cut(s)	7, 156, 387, 450, 646
AluI	AGCT	5 cut(s)	7, 156, 387, 450, 646
AlwI	GGATC	2 cut(s)	596, 609
AoxI	GGCC	4 cut(s)	116, 210, 365, 591
ApeKI	GCWGC	2 cut(s)	447, 643
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	210, 366, 402
AsuHPI	GGTGA	4 cut(s)	3, 16, 68, 225
AvaII	GGWCC	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	601
BbvI	GCAGC	2 cut(s)	459, 655
BccI	CCATC	3 cut(s)	137, 524, 724
BceAI	ACGGC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	360
BisI	GCNGC	2 cut(s)	448, 644
BlsI	GCNGC	2 cut(s)	449, 645
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	3 cut(s)	210, 366, 402
BmiI	GGNNCC	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 139, 207, 678
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	3 cut(s)	133, 177, 438
Bse3DI	GCAATG	2 cut(s)	297, 541
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	4 cut(s)	110, 139, 207, 678
BseMI	GCAATG	2 cut(s)	297, 541
BseNI	ACTGG	3 cut(s)	133, 177, 438
BseXI	GCAGC	2 cut(s)	459, 655
BseYI	CCCAGC	1 cut(s)	387
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	4 cut(s)	118, 212, 367, 593
BsiSI	CCGG	2 cut(s)	17, 192
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	4 cut(s)	110, 139, 207, 678
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	4 cut(s)	118, 212, 367, 593
Bsp143I	GATC	2 cut(s)	237, 601
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	2 cut(s)	14, 87
BspANI	GGCC	4 cut(s)	118, 212, 367, 593
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	603
BspPI	GGATC	2 cut(s)	596, 609
BsrDI	GCAATG	2 cut(s)	297, 541
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	133, 177, 438
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	2 cut(s)	237, 601
BssT1I	CCWWGG	1 cut(s)	673
Bst4CI	ACNGT	7 cut(s)	105, 142, 205, 494, 613, 640, 655
BstC8I	GCNNGC	3 cut(s)	18, 691, 695
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	2 cut(s)	240, 604
BstMBI	GATC	2 cut(s)	237, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 287
BstNSI	RCATGY	1 cut(s)	290
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	459, 655
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuRI	GGCC	4 cut(s)	118, 212, 367, 593
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	3 cut(s)	18, 691, 695
CfoI	GCGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	210, 366, 402
CviAII	CATG	5 cut(s)	287, 606, 617, 674, 720
DpnI	GATC	2 cut(s)	239, 603
DpnII	GATC	2 cut(s)	237, 601
DrdI	GACNNNNNNGTC	1 cut(s)	478
DseDI	GACNNNNNNGTC	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	5 cut(s)	290, 609, 620, 677, 723
FaiI	YATR	8 cut(s)	45, 288, 431, 549, 607, 618, 675, 721
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	5 cut(s)	286, 605, 616, 673, 719
Fnu4HI	GCNGC	2 cut(s)	448, 644
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	448, 644
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	2 cut(s)	448, 644
GsaI	CCCAGC	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	118, 212, 367, 593
HapII	CCGG	2 cut(s)	17, 192
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	5 cut(s)	290, 609, 620, 677, 723
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	2 cut(s)	138, 483
HindII	GTYRAC	2 cut(s)	138, 483
HinfI	GANTC	3 cut(s)	245, 437, 479
HpaII	CCGG	2 cut(s)	17, 192
HphI	GGTGA	4 cut(s)	3, 16, 68, 225
Hpy166II	GTNNAC	6 cut(s)	138, 145, 201, 405, 483, 725
Hpy188I	TCNGA	3 cut(s)	69, 463, 601
Hpy188III	TCNNGA	2 cut(s)	111, 554
Hpy8I	GTNNAC	6 cut(s)	138, 145, 201, 405, 483, 725
HpyAV	CCTTC	3 cut(s)	83, 286, 384
HpyCH4III	ACNGT	7 cut(s)	105, 142, 205, 494, 613, 640, 655
HpyCH4IV	ACGT	2 cut(s)	147, 197
HpyCH4V	TGCA	5 cut(s)	290, 398, 505, 609, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 287
HpySE526I	ACGT	2 cut(s)	147, 197
Hsp92II	CATG	5 cut(s)	290, 609, 620, 677, 723
HspAI	GCGC	1 cut(s)	357
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	237, 601
LmnI	GCTCC	2 cut(s)	4, 161
Lsp1109I	GCAGC	2 cut(s)	459, 655
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	147, 197
MalI	GATC	2 cut(s)	239, 603
MboI	GATC	2 cut(s)	237, 601
MboII	GAAGA	1 cut(s)	522
MflI	RGATCY	1 cut(s)	601
MluCI	AATT	1 cut(s)	705
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	7 cut(s)	90, 175, 278, 331, 492, 510, 583
MroNI	GCCGGC	1 cut(s)	16
MspI	CCGG	2 cut(s)	17, 192
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	13, 287
NaeI	GCCGGC	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	2 cut(s)	237, 601
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	5 cut(s)	290, 609, 620, 677, 723
NlaIV	GGNNCC	1 cut(s)	603
NspI	RCATGY	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PdiI	GCCGGC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	245, 437
PflMI	CCANNNNNTGG	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	449, 645
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp1406I	AACGTT	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	3 cut(s)	210, 366, 402
PsuI	RGATCY	1 cut(s)	601
SatI	GCNGC	2 cut(s)	448, 644
Sau3AI	GATC	2 cut(s)	237, 601
Sau96I	GGNCC	3 cut(s)	210, 366, 402
SchI	GAGTC	1 cut(s)	488
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	1 cut(s)	402
Sse9I	AATT	1 cut(s)	705
SsiI	CCGC	2 cut(s)	14, 87
SspMI	CTAG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	7 cut(s)	105, 142, 205, 494, 613, 640, 655
TaiI	ACGT	2 cut(s)	150, 200
TaqI	TCGA	3 cut(s)	336, 470, 541
TasI	AATT	1 cut(s)	705
TfiI	GAWTC	2 cut(s)	245, 437
TscAI	CASTG	1 cut(s)	645
TseI	GCWGC	2 cut(s)	447, 643
TspDTI	ATGAA	1 cut(s)	605
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	645
Van91I	CCANNNNNTGG	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	402
XceI	RCATGY	1 cut(s)	290
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.