RchiOBHm_Chr6g0308701

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004846
Physical Location & Seq
Forward (+)
66758554 .. 66761410
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27759

Sequence Viewer

Length: 1197 bp
ATGTTGTGGATATGGATGGTAACGTCCGAATGTACAGTCGAAAGAAGCCTGGAGAGACCTGGGGTGTTACGTGGCAAGCCATTTCGCAACCGCAAAATTCATGGGCTCTGTGGAGCCAATAGTTGGTGTACCTATAATCCTAGTATGGGTAGGAAATGCTCCTGCCTACCGGGATATAAGGTGGTAAATAAAGATGACTGGTCTTGTGGGTGCGAACCATATTTCAATCGGTCTTGTGATGCTCCCACGCCGGCCACAAGAGGTTTCAAAGAAGAAATTGGTAGAGGAGGAGGAGGAATTGTGTACAAGGGCACATTGTCCGATCAACGAGTTGCGGCAATCAAACAATTGGATATTGCTAACCAAGGAGAAGCAGAGTTCCTTGCAGAAGTGAGCCTTATCGGTAAGCTATACCACATGAACTTGATAGATATGTGGGGCTATTGCATAGAAGACAAGCACAGGCTTTTGGTGTATGAATACATGGAGCATGGTTCCTTGGCAAAAAATTTGTCTTCCAATGTCAATGTGCTAGATTGGAACAAAAGGTTTGAAATTGCTGTTGGTACAGCAAAAGGGCTAGCTTACTTGCATGAAGAATGCTTGGAATGGGTCTTGCACTGTGATATAAAGCCTCACAAGGTTCTCTTGGACTCTGAGGCCCCGTTTGGGTTGCTTTTAGAAGTTGTTGTGGATCAAAACACACTCTATGTCGTTGTTTTATGTACTAACACTACTAAAAAGAATTGCTTTTGCGACTCCTATTTTGCGACGGCAAATTGGGCTTTTGCGACGGAAAAAACTTTTCGCGACGGAAAATTGAGCCTTTTGCGACGGAAATGTTGGCGTTGCAATAGGTGGCGTCACAAAATCCATTTTGCGACGGTAAAATGCCGTTGCAAAAAGTATTTGCGACGGAAAACTATTGCCGTCGCAATGGCTAAACTATTTGCAACGGGTAATTTGCCGTCGCAAATAGATATTTCGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGTGAATTCCACACCCAAAAAAAAAAAAAAATTGCACACCAAAGCAAGTGCCATGTTCCACAAATATTATAAATTGACAAATATCAAAATACAATATCTATCATTCTTACACCAACCAAAAATCACAAATCCAAAAAAAAAAAAAAGACTAGTCAAGGCAACCCCAACACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

398

Amino Acids

45.8

Weight (kDa)

9.77

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 89 - 220 2.1e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 90 - 220 3.8e-23 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1092
AccB7I CCANNNNNTGG 1 cut(s) 123
AccII CGCG 1 cut(s) 810
AciI CCGC 2 cut(s) 91, 335
AclWI GGATC 1 cut(s) 702
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 3 cut(s) 96, 508, 1027
AcyI GRCGYC 1 cut(s) 862
AfaI GTAC 5 cut(s) 34, 130, 305, 568, 727
AfiI CCNNNNNNNGG 3 cut(s) 123, 146, 669
AgsI TTSAA 3 cut(s) 226, 268, 554
AhlI ACTAGT 1 cut(s) 1171
AjnI CCWGG 2 cut(s) 48, 58
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
AluBI AGCT 2 cut(s) 409, 584
AluI AGCT 2 cut(s) 409, 584
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 702
AoxI GGCC 2 cut(s) 252, 660
ApoI RAATTY 3 cut(s) 96, 508, 1027
ArsI GACNNNNNNTTYG 6 cut(s) 21, 53, 497, 529, 749, 781
AspS9I GGNCC 1 cut(s) 661
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 1036
AsuNHI GCTAGC 1 cut(s) 580
BaeGI GKGCMC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 459, 507
BccI CCATC 1 cut(s) 10
BceAI ACGGC 4 cut(s) 789, 879, 914, 952
BciT130I CCWGG 2 cut(s) 50, 60
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 49
BcuI ACTAGT 1 cut(s) 1171
BfaI CTAG 4 cut(s) 141, 533, 581, 1172
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 3 cut(s) 50, 60, 171
BmgT120I GGNCC 1 cut(s) 661
BmiI GGNNCC 3 cut(s) 115, 496, 663
BmrFI CCNGG 3 cut(s) 50, 60, 171
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 584
BpiI GAAGAC 2 cut(s) 459, 507
BpmI CTGGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 862
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 3 cut(s) 59, 364, 498
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 146, 669
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 942
BseBI CCWGG 2 cut(s) 50, 60
BseDI CCNNGG 3 cut(s) 59, 364, 498
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 3 cut(s) 123, 146, 669
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 3 cut(s) 300, 303, 306
BseSI GKGCMC 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 810
BshFI GGCC 2 cut(s) 254, 662
BsiSI CCGG 2 cut(s) 170, 251
BslI CCNNNNNNNGG 3 cut(s) 123, 146, 669
BsmAI GTCTC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 2 cut(s) 254, 662
Bso31I GGTCTC 1 cut(s) 49
Bsp1286I GDGCHC 2 cut(s) 108, 314
Bsp1407I TGTACA 2 cut(s) 32, 303
Bsp143I GATC 2 cut(s) 322, 694
Bsp68I TCGCGA 1 cut(s) 810
BspACI CCGC 2 cut(s) 91, 335
BspANI GGCC 2 cut(s) 254, 662
BspCNI CTCAG 1 cut(s) 649
BspFNI CGCG 1 cut(s) 810
BspLI GGNNCC 3 cut(s) 115, 496, 663
BspOI GCTAGC 1 cut(s) 584
BspPI GGATC 1 cut(s) 702
BspTNI GGTCTC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 942
BsrFI RCCGGY 1 cut(s) 250
BsrGI TGTACA 2 cut(s) 32, 303
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 59, 364, 498
BssMI GATC 2 cut(s) 322, 694
BssNI GRCGYC 1 cut(s) 862
BssT1I CCWWGG 2 cut(s) 364, 498
Bst2UI CCWGG 2 cut(s) 50, 60
Bst4CI ACNGT 4 cut(s) 37, 623, 886, 1194
BstACI GRCGYC 1 cut(s) 862
BstAUI TGTACA 2 cut(s) 32, 303
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 3 cut(s) 77, 252, 582
BstDEI CTNAG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 21
BstFNI CGCG 1 cut(s) 810
BstKTI GATC 2 cut(s) 325, 697
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 322, 694
BstMWI GCNNNNNNNGC 1 cut(s) 782
BstNI CCWGG 2 cut(s) 50, 60
BstSCI CCNGG 3 cut(s) 48, 58, 169
BstSLI GKGCMC 1 cut(s) 314
BstUI CGCG 1 cut(s) 810
BstV2I GAAGAC 2 cut(s) 459, 507
BsuRI GGCC 2 cut(s) 254, 662
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 619, 1190
BtuMI TCGCGA 1 cut(s) 810
Cac8I GCNNGC 3 cut(s) 77, 252, 582
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 661
CseI GACGC 1 cut(s) 851
Csp6I GTAC 5 cut(s) 33, 129, 304, 567, 726
CviAII CATG 6 cut(s) 101, 418, 484, 491, 593, 1075
CviQI GTAC 5 cut(s) 33, 129, 304, 567, 726
DdeI CTNAG 1 cut(s) 657
DpnI GATC 2 cut(s) 324, 696
DpnII GATC 2 cut(s) 322, 694
DraI TTTAAA 1 cut(s) 991
EaeI YGGCCR 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 364, 498
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 661
EcoRI GAATTC 1 cut(s) 1027
EcoRII CCWGG 2 cut(s) 48, 58
EcoT14I CCWWGG 2 cut(s) 364, 498
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 364, 498
FaeI CATG 6 cut(s) 104, 421, 487, 494, 596, 1078
FalI AAGNNNNNCTT 6 cut(s) 381, 413, 632, 664, 734, 766
FatI CATG 6 cut(s) 100, 417, 483, 490, 592, 1074
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 4 cut(s) 141, 533, 581, 1172
GluI GCNGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 2 cut(s) 254, 662
HapII CCGG 2 cut(s) 170, 251
HgaI GACGC 1 cut(s) 851
Hin1I GRCGYC 1 cut(s) 862
Hin1II CATG 6 cut(s) 104, 421, 487, 494, 596, 1078
HinfI GANTC 2 cut(s) 653, 758
HpaII CCGG 2 cut(s) 170, 251
HphI GGTGA 1 cut(s) 1036
Hpy166II GTNNAC 2 cut(s) 129, 304
Hpy188I TCNGA 3 cut(s) 28, 322, 658
Hpy188III TCNNGA 1 cut(s) 809
Hpy8I GTNNAC 2 cut(s) 129, 304
Hpy99I CGWCG 8 cut(s) 775, 796, 815, 837, 886, 918, 935, 973
HpyCH4III ACNGT 4 cut(s) 37, 623, 886, 1194
HpyCH4IV ACGT 2 cut(s) 23, 70
HpyCH4V TGCA 8 cut(s) 386, 447, 592, 619, 852, 900, 953, 1057
HpyF10VI GCNNNNNNNGC 1 cut(s) 782
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 2 cut(s) 23, 70
Hsp92I GRCGYC 1 cut(s) 862
Hsp92II CATG 6 cut(s) 104, 421, 487, 494, 596, 1078
KroI GCCGGC 1 cut(s) 250
KroNI GCCGGC 1 cut(s) 252
Kzo9I GATC 2 cut(s) 322, 694
LmnI GCTCC 4 cut(s) 113, 164, 247, 487
LpnPI CCDG 9 cut(s) 35, 45, 62, 72, 175, 183, 184, 264, 448
LweI GCATC 1 cut(s) 229
MaeI CTAG 4 cut(s) 141, 533, 581, 1172
MaeII ACGT 2 cut(s) 23, 70
MaeIII GTNAC 3 cut(s) 19, 66, 863
MalI GATC 2 cut(s) 324, 696
MboI GATC 2 cut(s) 322, 694
MboII GAAGA 4 cut(s) 284, 464, 507, 608
MfeI CAATTG 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 108, 314
MlyI GAGTC 2 cut(s) 647, 752
MnlI CCTC 7 cut(s) 254, 278, 281, 284, 287, 645, 652
MroNI GCCGGC 1 cut(s) 250
MseI TTAA 1 cut(s) 990
MspI CCGG 2 cut(s) 170, 251
MspR9I CCNGG 3 cut(s) 50, 60, 171
MunI CAATTG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 2 cut(s) 50, 60
MvnI CGCG 1 cut(s) 810
MwoI GCNNNNNNNGC 1 cut(s) 782
NaeI GCCGGC 1 cut(s) 252
NciI CCSGG 1 cut(s) 171
NdeII GATC 2 cut(s) 322, 694
NgoMIV GCCGGC 1 cut(s) 250
NheI GCTAGC 1 cut(s) 580
NlaIII CATG 6 cut(s) 104, 421, 487, 494, 596, 1078
NlaIV GGNNCC 3 cut(s) 115, 496, 663
NmuCI GTSAC 1 cut(s) 863
NruI TCGCGA 1 cut(s) 810
PctI GAATGC 1 cut(s) 605
PdiI GCCGGC 1 cut(s) 252
PflMI CCANNNNNTGG 1 cut(s) 123
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 2 cut(s) 647, 752
PpsI GAGTC 2 cut(s) 647, 752
Ppu21I YACGTR 1 cut(s) 71
PsiI TTATAA 1 cut(s) 1092
Psp6I CCWGG 2 cut(s) 48, 58
PspGI CCWGG 2 cut(s) 48, 58
PspN4I GGNNCC 3 cut(s) 115, 496, 663
PspPI GGNCC 1 cut(s) 661
RruI TCGCGA 1 cut(s) 810
RsaI GTAC 5 cut(s) 34, 130, 305, 568, 727
RsaNI GTAC 5 cut(s) 33, 129, 304, 567, 726
SaqAI TTAA 1 cut(s) 990
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 322, 694
Sau96I GGNCC 1 cut(s) 661
SchI GAGTC 2 cut(s) 647, 752
ScrFI CCNGG 3 cut(s) 50, 60, 171
SduI GDGCHC 2 cut(s) 108, 314
SfaNI GCATC 1 cut(s) 229
SpeI ACTAGT 1 cut(s) 1171
SsiI CCGC 2 cut(s) 91, 335
SspI AATATT 1 cut(s) 1088
SspMI CTAG 4 cut(s) 141, 533, 581, 1172
StyD4I CCNGG 3 cut(s) 48, 58, 169
StyI CCWWGG 2 cut(s) 364, 498
TaaI ACNGT 4 cut(s) 37, 623, 886, 1194
TaiI ACGT 2 cut(s) 26, 73
TaqI TCGA 1 cut(s) 39
TaqII GACCGA 1 cut(s) 219
TatI WGTACW 3 cut(s) 32, 303, 725
TauI GCSGC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 990
Tru9I TTAA 1 cut(s) 990
TscAI CASTG 2 cut(s) 626, 1197
TseFI GTSAC 1 cut(s) 863
Tsp45I GTSAC 1 cut(s) 863
TspDTI ATGAA 4 cut(s) 89, 434, 492, 609
TspGWI ACGGA 4 cut(s) 809, 828, 850, 931
TspRI CASTG 2 cut(s) 626, 1197
Van91I CCANNNNNTGG 1 cut(s) 123
XapI RAATTY 3 cut(s) 96, 508, 1027
XspI CTAG 4 cut(s) 141, 533, 581, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.