Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004846

Physical Location & Seq

Genomic Coordinates Forward (+)

65956819 .. 65959236

Gene Structure 2418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG478400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCTGCTCTGTTTCACATTCTTCTTCTTTTTCTTGCAATTTATTTCCAAATCTCGTCTTCAACGTCCGACACTCTGAATAAAGGCTCATCCCTATCTGTAGAGAAACCAGATGATGTTTTAACTTCACCGGATGGAGTTTTCACTGCCGGGTTTCACCAAGTCGGCAACAATTCATTTTGCTTTGCTATTTGGTTCAGTGAGCCATTTGACCACTACAAAAACAGAACCATAGTCTGGATGGCCAACCGTGGCCAACCAGTCAATGGCAAACACTCAAAGCTCTCCCTCCTCAAAACTGGTGATCTCATCTTAACCGACGCTGGTCAATCCATTGTTTGGTCCACAGCCACCACTTCAGTCTCACAGGAGAACTTAAGCCTCCACAATTCCGGCAATCTTGTTTTGCTAAACTCGGAGCATGTCATTCTATGGCAGAGCTTTGATCACCCTACTGATACTCTTCTCCCAGACCAACCACTCACTAGAAGCACAATCCTTGTCTCCATGAGAAGCCCGAGCAACTACTCCTCAGGCTTCTACAAGCTCTTCTTTGACCATGACAACCTTCTCCGGCTACTCTTCGACGGTCTTGAGATTTCAAGTGTGTATTGGTTTGAGCCATGGCAAACAGGCCGAACAGCCAGAAGGTCCAAAGACAACAACAGTAGAGTTGCCGTGATGGATTCCTTAGGCAATTTTACTTCATCAGACAAATATACTTTGATCGCTTCCGATTATGGTGCAGCTTCGCAAAGAAGACTGACGGTTGATTGTGATGGAAATGTTCGGTTGCACAGCCGGGCCAAACCCGGAGACAGATGGGTTGTGACAGGGCAGATAATGGAAAATGCTTGTCTGATTCATGGGGTTTGTGGTCCTAATAGTGTGTGTGACTATGAGCCTAGTACTGGAAGAAAATGTTCTTGCATTCCTGGTTACAAAATGGCAAACTATACTGATTGGTATTATGGTTGTGAACCTGAGTTCAATTACACTTGCGGCAGAGGTGAGTCCAGTTTCTTCAAGCTTTCGAGGCTCGACTTTTACGGCTATGGGGTTGTGGTGTTGGAGATGGTGACCGGAAAGAACCCGATAAAGCTGGATGTGGATGCCATTGATGGCGAGCAGAGAAGGATGATCGTGTGGGTGAGGGAGAAATTACATAATGGAACTTCTGCTAGTGAAATTGAAGCTCGGATAGGAGACGTCATAGACCCTTCGTTTGAAGGTAAATATGATGTAAAAAATATGGGGATTCTGTTGGAAGTGGCTTTACAATGCGTAGAGGAAGACAGAGACGCGAGACCAACTATGAGCCAAGTCGTTGAGATGCTTGTGCTGCTTGACAAAGACCAAGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

455

Amino Acids

51.04

Weight (kDa)

5.41

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	77 - 164	1.7e-24	D-mannose binding lectin
S_locus_glycop	PF00954	247 - 316	4.5e-08	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004846)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33830 FvH4_2g33840 FvH4_2g33850
malus_domestica	MD15G1076500.v1.1
prunus_persica	Prupe.1G429800_v2.0.a1 Prupe.1G429900_v2.0.a1
pyrus_communis	pycom08g07440
rosa_chinensis	RchiOBHm_Chr6g0308701 RchiOBHm_Chr6g0308721
rosa_laevigata	RLG00000010627 RLG00000010628
rosa_multiflora	Rmu_co8093658.1_g000001 Rmu_sc0000871.1_g000016 Rmu_sc0000871.1_g000018 Rmu_sc0017014.1_g000001 Rmu_sc0017015.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160000 Rroxscaffold_7G00160010
rosa_rugosa	Rorug06G0367800
rosa_samantha	Rh6AG478400 Rh6AG478800 Rh6BG488300 Rh6BG488400 Rh6CG492900 Rh6CG493200 Rh6CG493400 Rh6CG493600 Rh6CG493700 Rh6DG479200 Rh6DG479300
rosa_wichuraiana	Rw6G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1212
AccB7I	CCANNNNNTGG	3 cut(s)	237, 266, 339
AccII	CGCG	1 cut(s)	1304
AciI	CCGC	1 cut(s)	1002
AcoI	YGGCCR	2 cut(s)	243, 253
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	1209
AfaI	GTAC	1 cut(s)	910
AfiI	CCNNNNNNNGG	4 cut(s)	237, 266, 339, 911
AflII	CTTAAG	1 cut(s)	376
AgsI	TTSAA	6 cut(s)	63, 603, 991, 1027, 1193, 1229
AjnI	CCWGG	1 cut(s)	934
AluBI	AGCT	7 cut(s)	283, 441, 547, 749, 1030, 1102, 1196
AluI	AGCT	7 cut(s)	283, 441, 547, 749, 1030, 1102, 1196
Alw26I	GTCTC	6 cut(s)	367, 508, 810, 1200, 1293, 1300
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	4 cut(s)	243, 253, 634, 804
ApeKI	GCWGC	3 cut(s)	5, 746, 1342
ArsI	GACNNNNNNTTYG	2 cut(s)	1208, 1240
Asp700I	GAANNNNTTC	1 cut(s)	922
AspS9I	GGNCC	4 cut(s)	342, 651, 804, 878
AsuC2I	CCSGG	3 cut(s)	151, 803, 813
AsuHPI	GGTGA	7 cut(s)	120, 149, 314, 440, 1022, 1090, 1162
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	3 cut(s)	342, 651, 878
AxyI	CCTNAGG	2 cut(s)	532, 691
BalI	TGGCCA	2 cut(s)	245, 255
BarI	GAAGNNNNNNTAC	2 cut(s)	1260, 1292
BbsI	GAAGAC	3 cut(s)	51, 766, 1299
BbvI	GCAGC	2 cut(s)	758, 1329
BccI	CCATC	7 cut(s)	128, 235, 676, 773, 816, 1069, 1115
BceAI	ACGGC	2 cut(s)	662, 1066
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BciT130I	CCWGG	1 cut(s)	936
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	3 cut(s)	151, 803, 813
BcoDI	GTCTC	6 cut(s)	367, 508, 810, 1200, 1293, 1300
BfaI	CTAG	3 cut(s)	486, 906, 1182
BfmI	CTRYAG	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	376
BisI	GCNGC	4 cut(s)	6, 747, 1003, 1343
BlsI	GCNGC	4 cut(s)	7, 748, 1004, 1344
BmcAI	AGTACT	1 cut(s)	910
Bme1390I	CCNGG	4 cut(s)	151, 803, 813, 936
Bme18I	GGWCC	3 cut(s)	342, 651, 878
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	4 cut(s)	342, 651, 804, 878
BmrFI	CCNGG	4 cut(s)	151, 803, 813, 936
BmsI	GCATC	2 cut(s)	1102, 1323
BoxI	GACNNNNGTC	1 cut(s)	324
BpiI	GAAGAC	3 cut(s)	51, 766, 1299
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	3 cut(s)	151, 803, 813
BsaHI	GRCGYC	1 cut(s)	1209
BsaI	GGTCTC	1 cut(s)	1300
BsaJI	CCNNGG	2 cut(s)	250, 623
BsaWI	WCCGGW	2 cut(s)	130, 1082
Bsc4I	CCNNNNNNNGG	4 cut(s)	237, 266, 339, 911
Bse1I	ACTGG	4 cut(s)	260, 304, 916, 1017
Bse21I	CCTNAGG	2 cut(s)	532, 691
BseBI	CCWGG	1 cut(s)	936
BseDI	CCNNGG	2 cut(s)	250, 623
BseGI	GGATG	6 cut(s)	89, 139, 246, 1111, 1117, 1143
BseLI	CCNNNNNNNGG	4 cut(s)	237, 266, 339, 911
BseMII	CTCAG	2 cut(s)	546, 975
BseNI	ACTGG	4 cut(s)	260, 304, 916, 1017
BseRI	GAGGAG	2 cut(s)	281, 520
BseXI	GCAGC	2 cut(s)	758, 1329
BsgI	GTGCAG	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	1304
BshFI	GGCC	4 cut(s)	245, 255, 636, 806
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	7 cut(s)	131, 150, 393, 574, 802, 813, 1083
BslI	CCNNNNNNNGG	4 cut(s)	237, 266, 339, 911
BsmAI	GTCTC	6 cut(s)	367, 508, 810, 1200, 1293, 1300
BsmBI	CGTCTC	2 cut(s)	1200, 1293
BsmI	GAATGC	1 cut(s)	930
BsnI	GGCC	4 cut(s)	245, 255, 636, 806
Bso31I	GGTCTC	1 cut(s)	1300
BsoBI	CYCGRG	1 cut(s)	517
Bsp143I	GATC	4 cut(s)	304, 445, 726, 1140
Bsp19I	CCATGG	1 cut(s)	623
BspACI	CCGC	1 cut(s)	1002
BspANI	GGCC	4 cut(s)	245, 255, 636, 806
BspCNI	CTCAG	2 cut(s)	545, 976
BspFNI	CGCG	1 cut(s)	1304
BspQI	GCTCTTC	1 cut(s)	554
BspTI	CTTAAG	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	1300
BsrI	ACTGG	4 cut(s)	260, 304, 916, 1017
BssECI	CCNNGG	2 cut(s)	250, 623
BssMI	GATC	4 cut(s)	304, 445, 726, 1140
BssNI	GRCGYC	1 cut(s)	1209
BssT1I	CCWWGG	1 cut(s)	623
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	4 cut(s)	251, 590, 668, 769
Bst6I	CTCTTC	3 cut(s)	468, 554, 587
BstACI	GRCGYC	1 cut(s)	1209
BstAFI	CTTAAG	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	1127
BstDEI	CTNAG	3 cut(s)	532, 691, 984
BstDSI	CCRYGG	2 cut(s)	250, 623
BstEII	GGTNACC	1 cut(s)	1078
BstF5I	GGATG	6 cut(s)	89, 139, 246, 1111, 1117, 1143
BstFNI	CGCG	1 cut(s)	1304
BstKTI	GATC	4 cut(s)	307, 448, 729, 1143
BstMAI	GTCTC	6 cut(s)	367, 508, 810, 1200, 1293, 1300
BstMBI	GATC	4 cut(s)	304, 445, 726, 1140
BstMWI	GCNNNNNNNGC	2 cut(s)	1036, 1342
BstNI	CCWGG	1 cut(s)	936
BstNSI	RCATGY	1 cut(s)	425
BstPAI	GACNNNNGTC	1 cut(s)	324
BstPI	GGTNACC	1 cut(s)	1078
BstSCI	CCNGG	4 cut(s)	149, 801, 811, 934
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	1304
BstV1I	GCAGC	2 cut(s)	758, 1329
BstV2I	GAAGAC	3 cut(s)	51, 766, 1299
Bsu36I	CCTNAGG	2 cut(s)	532, 691
BsuRI	GGCC	4 cut(s)	245, 255, 636, 806
BtgI	CCRYGG	2 cut(s)	250, 623
BtsCI	GGATG	6 cut(s)	89, 139, 246, 1111, 1117, 1143
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 205
Cac8I	GCNNGC	1 cut(s)	1127
Cfr13I	GGNCC	4 cut(s)	342, 651, 804, 878
CseI	GACGC	2 cut(s)	329, 1310
Csp6I	GTAC	1 cut(s)	909
CviAII	CATG	5 cut(s)	422, 508, 560, 624, 866
CviQI	GTAC	1 cut(s)	909
DdeI	CTNAG	3 cut(s)	532, 691, 984
DpnI	GATC	4 cut(s)	306, 447, 728, 1142
DpnII	GATC	4 cut(s)	304, 445, 726, 1140
EaeI	YGGCCR	2 cut(s)	243, 253
Eam1104I	CTCTTC	3 cut(s)	468, 554, 587
EarI	CTCTTC	3 cut(s)	468, 554, 587
Eco130I	CCWWGG	1 cut(s)	623
Eco31I	GGTCTC	1 cut(s)	1300
Eco47I	GGWCC	3 cut(s)	342, 651, 878
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	2 cut(s)	532, 691
Eco88I	CYCGRG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	1078
EcoO65I	GGTNACC	1 cut(s)	1078
EcoRII	CCWGG	1 cut(s)	934
EcoT14I	CCWWGG	1 cut(s)	623
ErhI	CCWWGG	1 cut(s)	623
Esp3I	CGTCTC	2 cut(s)	1200, 1293
FaeI	CATG	5 cut(s)	425, 511, 563, 627, 869
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FatI	CATG	5 cut(s)	421, 507, 559, 623, 865
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	6, 747, 1003, 1343
FokI	GGATG	6 cut(s)	76, 146, 253, 1118, 1124, 1150
Fsp4HI	GCNGC	4 cut(s)	6, 747, 1003, 1343
FspBI	CTAG	3 cut(s)	486, 906, 1182
GluI	GCNGC	4 cut(s)	6, 747, 1003, 1343
HaeIII	GGCC	4 cut(s)	245, 255, 636, 806
HapII	CCGG	7 cut(s)	131, 150, 393, 574, 802, 813, 1083
HgaI	GACGC	2 cut(s)	329, 1310
Hin1I	GRCGYC	1 cut(s)	1209
Hin1II	CATG	5 cut(s)	425, 511, 563, 627, 869
HindIII	AAGCTT	1 cut(s)	1028
HinfI	GANTC	4 cut(s)	686, 862, 1013, 1258
HpaII	CCGG	7 cut(s)	131, 150, 393, 574, 802, 813, 1083
HphI	GGTGA	7 cut(s)	120, 149, 314, 440, 1022, 1090, 1162
Hpy166II	GTNNAC	2 cut(s)	345, 980
Hpy188I	TCNGA	7 cut(s)	70, 78, 418, 712, 736, 861, 1200
Hpy188III	TCNNGA	2 cut(s)	238, 593
Hpy8I	GTNNAC	2 cut(s)	345, 980
Hpy99I	CGWCG	2 cut(s)	323, 590
HpyAV	CCTTC	5 cut(s)	578, 642, 1128, 1223, 1230
HpyCH4III	ACNGT	4 cut(s)	251, 590, 668, 769
HpyCH4IV	ACGT	2 cut(s)	65, 1209
HpyCH4V	TGCA	4 cut(s)	38, 746, 796, 930
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1036, 1342
HpyF3I	CTNAG	3 cut(s)	532, 691, 984
HpySE526I	ACGT	2 cut(s)	65, 1209
Hsp92I	GRCGYC	1 cut(s)	1209
Hsp92II	CATG	5 cut(s)	425, 511, 563, 627, 869
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	304, 445, 726, 1140
LguI	GCTCTTC	1 cut(s)	554
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	2 cut(s)	758, 1329
LweI	GCATC	2 cut(s)	1102, 1323
MaeI	CTAG	3 cut(s)	486, 906, 1182
MaeII	ACGT	2 cut(s)	65, 1209
MaeIII	GTNAC	4 cut(s)	829, 893, 938, 1078
MalI	GATC	4 cut(s)	306, 447, 728, 1142
MboI	GATC	4 cut(s)	304, 445, 726, 1140
MlsI	TGGCCA	2 cut(s)	245, 255
MluCI	AATT	7 cut(s)	39, 172, 388, 697, 991, 1160, 1188
MluNI	TGGCCA	2 cut(s)	245, 255
MlyI	GAGTC	1 cut(s)	1022
MmeI	TCCRAC	3 cut(s)	93, 1050, 1245
MnlI	CCTC	8 cut(s)	299, 302, 392, 541, 1001, 1029, 1146, 1282
Mox20I	TGGCCA	2 cut(s)	245, 255
MroXI	GAANNNNTTC	1 cut(s)	922
MscI	TGGCCA	2 cut(s)	245, 255
MseI	TTAA	3 cut(s)	122, 314, 377
Msp20I	TGGCCA	2 cut(s)	245, 255
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	7 cut(s)	131, 150, 393, 574, 802, 813, 1083
MspR9I	CCNGG	4 cut(s)	151, 803, 813, 936
Mva1269I	GAATGC	1 cut(s)	930
MvaI	CCWGG	1 cut(s)	936
MvnI	CGCG	1 cut(s)	1304
MwoI	GCNNNNNNNGC	2 cut(s)	1036, 1342
NciI	CCSGG	3 cut(s)	151, 803, 813
NcoI	CCATGG	1 cut(s)	623
NdeII	GATC	4 cut(s)	304, 445, 726, 1140
NlaIII	CATG	5 cut(s)	425, 511, 563, 627, 869
NmuCI	GTSAC	3 cut(s)	829, 893, 1078
NspI	RCATGY	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	1 cut(s)	930
PdmI	GAANNNNTTC	1 cut(s)	922
PfeI	GAWTC	3 cut(s)	686, 862, 1258
PflMI	CCANNNNNTGG	3 cut(s)	237, 266, 339
PkrI	GCNGC	4 cut(s)	7, 748, 1004, 1344
PleI	GAGTC	1 cut(s)	1021
PpsI	GAGTC	1 cut(s)	1021
PshAI	GACNNNNGTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	934
PspEI	GGTNACC	1 cut(s)	1078
PspGI	CCWGG	1 cut(s)	934
PspPI	GGNCC	4 cut(s)	342, 651, 804, 878
RsaI	GTAC	1 cut(s)	910
RsaNI	GTAC	1 cut(s)	909
SapI	GCTCTTC	1 cut(s)	554
SaqAI	TTAA	3 cut(s)	122, 314, 377
SatI	GCNGC	4 cut(s)	6, 747, 1003, 1343
Sau3AI	GATC	4 cut(s)	304, 445, 726, 1140
Sau96I	GGNCC	4 cut(s)	342, 651, 804, 878
ScaI	AGTACT	1 cut(s)	910
SchI	GAGTC	1 cut(s)	1022
ScrFI	CCNGG	4 cut(s)	151, 803, 813, 936
SfaNI	GCATC	2 cut(s)	1102, 1323
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	3 cut(s)	342, 651, 878
SmlI	CTYRAG	2 cut(s)	376, 593
SmoI	CTYRAG	2 cut(s)	376, 593
Sse9I	AATT	7 cut(s)	39, 172, 388, 697, 991, 1160, 1188
SsiI	CCGC	1 cut(s)	1002
SspMI	CTAG	3 cut(s)	486, 906, 1182
StyD4I	CCNGG	4 cut(s)	149, 801, 811, 934
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	4 cut(s)	251, 590, 668, 769
TaiI	ACGT	2 cut(s)	68, 1212
TaqI	TCGA	3 cut(s)	585, 1034, 1041
TasI	AATT	7 cut(s)	39, 172, 388, 697, 991, 1160, 1188
TatI	WGTACW	1 cut(s)	908
TauI	GCSGC	1 cut(s)	1005
TfiI	GAWTC	3 cut(s)	686, 862, 1258
Tru1I	TTAA	3 cut(s)	122, 314, 377
Tru9I	TTAA	3 cut(s)	122, 314, 377
TscAI	CASTG	2 cut(s)	151, 205
TseFI	GTSAC	3 cut(s)	829, 893, 1078
TseI	GCWGC	3 cut(s)	5, 746, 1342
Tsp45I	GTSAC	3 cut(s)	829, 893, 1078
TspDTI	ATGAA	3 cut(s)	165, 696, 854
TspRI	CASTG	2 cut(s)	151, 205
Van91I	CCANNNNNTGG	3 cut(s)	237, 266, 339
Vha464I	CTTAAG	1 cut(s)	376
VpaK11BI	GGWCC	3 cut(s)	342, 651, 878
XceI	RCATGY	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	2 cut(s)	238, 263
XmnI	GAANNNNTTC	1 cut(s)	922
XspI	CTAG	3 cut(s)	486, 906, 1182
ZraI	GACGTC	1 cut(s)	1210
ZrmI	AGTACT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.