Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004846

Physical Location & Seq

Genomic Coordinates Forward (+)

65917905 .. 65920304

Gene Structure 2400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG492900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCTGCTCTGTTTCACAATCTTCTTCTTTTTCTGGCAATTTATTTCCAAATCTCGTCTTCAACCTCCAACACTCTGAATAAAGCCTCATCCCTATCTGTAGAGAAACCAGACGATGTTTTAACTTCACCGGATGGAGTTTTCACCGCCGGGTTTCACCAAGTCGGCAACAATTCGTTTTGCTTTGCCATTTGGTTTAGTGAGCCATTTGACCACTACAAAAACAGAACCATAGTCTGGATGGCCAACCGTGACCAACCAGTCAATGGCAAACACTCAAAGCTCTCCCTCCTCAAAACTGGTGATTTCATCTTAACCGACGCTGGTCAATCCAACGTTTGGTCCACAGCCACCACTTCAGTCTCACCGGCGAACTTAAGCCTCCACAATTCAGGCAATCTTGTTTTGCTCAACTCGGAGCATGTCATTCTATGGCAGAGCTTTGATTACCCTACTGATACTCTTCTTTCGAGCCAACCACTCACTAGAAGCACAATCCTTGTCTCCATGAGAAGCCCGAGCAACTACTCCTCTGGATTCTACAAGCTCTTCTTTGACAATGACAACCTTCTCCGGCTACTTTTCGACGGTCTTGAGGTTTCAAGTGTGTATTGGTTTGAGCCGTGGCTCACAGGCCGAGACGCCGGAAGGTCCACAGATAACAGCAGTAGAGTTGCCGTGATGGATTCCCTAGGCAAGTTTACTTCATCGGACACCTATACTTTGATCGCTTCCGATTATGGTGCAGCTTCGCAGAGAAGACTGACGGTTGATTGTGATGGAAATGTTCGGTTGCACAGCCGGGCCAAACCCGGAGACAGATGGATTGTGACAGGGCAGATCATTCAAGATCCTTGTAAGATTCATGGGGTTTGTGGTCCTAATAGTGTGTGCAGCTATGAGCCTAGCACCGGAAGAAAATGTTCTTGCATTCCTGGTTACAAAATGTTAAATCTTACTGATTGGTATTATGGTTGTGAACCTGAGTTCAATTACACTTGCAGTAGAGGTGAGTCTAGTTTCTTCAAGCTCTCGAAGCTCGAGTTTTTCGGTGAAATTGAAGCTCGGATAGGAGACGTCATAGACCCTTCGTTTGAAGGTAAATATGATGTAAAAAAGATGGGGATTCTGTTCGAAGTGGCTTTACATTGCGTAGAGGAAGACAGAGACGCGAGACCAACTATGAGCCAAGTCGTTGAGATGCTTGTGCTGGTTGACAAAGACCAAGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

411

Amino Acids

45.98

Weight (kDa)

5.4

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	77 - 163	1.2e-22	D-mannose binding lectin
S_locus_glycop	PF00954	247 - 315	6.4e-08	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004846)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33830 FvH4_2g33840 FvH4_2g33850
malus_domestica	MD15G1076500.v1.1
prunus_persica	Prupe.1G429800_v2.0.a1 Prupe.1G429900_v2.0.a1
pyrus_communis	pycom08g07440
rosa_chinensis	RchiOBHm_Chr6g0308701 RchiOBHm_Chr6g0308721
rosa_laevigata	RLG00000010627 RLG00000010628
rosa_multiflora	Rmu_co8093658.1_g000001 Rmu_sc0000871.1_g000016 Rmu_sc0000871.1_g000018 Rmu_sc0017014.1_g000001 Rmu_sc0017015.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160000 Rroxscaffold_7G00160010
rosa_rugosa	Rorug06G0367800
rosa_samantha	Rh6AG478400 Rh6AG478800 Rh6BG488300 Rh6BG488400 Rh6CG492900 Rh6CG493200 Rh6CG493400 Rh6CG493600 Rh6CG493700 Rh6DG479200 Rh6DG479300
rosa_wichuraiana	Rw6G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AatII	GACGTC	1 cut(s)	1080
AccB7I	CCANNNNNTGG	3 cut(s)	237, 266, 339
AccII	CGCG	1 cut(s)	1172
AciI	CCGC	1 cut(s)	147
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	1 cut(s)	845
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	2 cut(s)	642, 1077
AfiI	CCNNNNNNNGG	4 cut(s)	237, 266, 339, 911
AflII	CTTAAG	1 cut(s)	376
AgsI	TTSAA	7 cut(s)	63, 603, 848, 991, 1027, 1061, 1097
AjnI	CCWGG	1 cut(s)	934
AluBI	AGCT	8 cut(s)	283, 441, 547, 749, 897, 1030, 1039, 1064
AluI	AGCT	8 cut(s)	283, 441, 547, 749, 897, 1030, 1039, 1064
Alw26I	GTCTC	7 cut(s)	367, 508, 633, 810, 1068, 1161, 1168
AlwI	GGATC	1 cut(s)	845
Ama87I	CYCGRG	2 cut(s)	517, 1040
AoxI	GGCC	3 cut(s)	243, 634, 804
ApeKI	GCWGC	3 cut(s)	5, 746, 894
ArsI	GACNNNNNNTTYG	2 cut(s)	1076, 1108
Asp700I	GAANNNNTTC	1 cut(s)	922
AspA2I	CCTAGG	1 cut(s)	691
AspS9I	GGNCC	4 cut(s)	342, 651, 804, 878
AsuC2I	CCSGG	3 cut(s)	151, 803, 813
AsuHPI	GGTGA	7 cut(s)	120, 136, 149, 314, 357, 1022, 1064
AsuII	TTCGAA	1 cut(s)	1134
AvaI	CYCGRG	2 cut(s)	517, 1040
AvaII	GGWCC	3 cut(s)	342, 651, 878
AvrII	CCTAGG	1 cut(s)	691
BalI	TGGCCA	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	1128, 1160
BbsI	GAAGAC	3 cut(s)	51, 766, 1167
BbvI	GCAGC	2 cut(s)	758, 906
BccI	CCATC	6 cut(s)	128, 235, 676, 773, 816, 1114
BceAI	ACGGC	2 cut(s)	607, 662
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BciT130I	CCWGG	1 cut(s)	936
BcnI	CCSGG	3 cut(s)	151, 803, 813
BcoDI	GTCTC	7 cut(s)	367, 508, 633, 810, 1068, 1161, 1168
BfaI	CTAG	4 cut(s)	486, 692, 906, 1017
BfmI	CTRYAG	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	376
BisI	GCNGC	3 cut(s)	6, 747, 895
BlnI	CCTAGG	1 cut(s)	691
BlsI	GCNGC	3 cut(s)	7, 748, 896
Bme1390I	CCNGG	4 cut(s)	151, 803, 813, 936
Bme18I	GGWCC	3 cut(s)	342, 651, 878
BmeT110I	CYCGRG	2 cut(s)	517, 1040
BmgT120I	GGNCC	4 cut(s)	342, 651, 804, 878
BmrFI	CCNGG	4 cut(s)	151, 803, 813, 936
BmsI	GCATC	1 cut(s)	1191
BoxI	GACNNNNGTC	1 cut(s)	324
BpiI	GAAGAC	3 cut(s)	51, 766, 1167
Bpu14I	TTCGAA	1 cut(s)	1134
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	3 cut(s)	151, 803, 813
BsaHI	GRCGYC	2 cut(s)	642, 1077
BsaI	GGTCTC	1 cut(s)	1168
BsaJI	CCNNGG	2 cut(s)	623, 691
BsaWI	WCCGGW	2 cut(s)	130, 911
Bsc4I	CCNNNNNNNGG	4 cut(s)	237, 266, 339, 911
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	260, 304
Bse3DI	GCAATG	1 cut(s)	1147
BseBI	CCWGG	1 cut(s)	936
BseDI	CCNNGG	2 cut(s)	623, 691
BseGI	GGATG	3 cut(s)	89, 139, 246
BseLI	CCNNNNNNNGG	4 cut(s)	237, 266, 339, 911
BseMI	GCAATG	1 cut(s)	1147
BseMII	CTCAG	1 cut(s)	975
BseNI	ACTGG	2 cut(s)	260, 304
BseRI	GAGGAG	2 cut(s)	281, 520
BseXI	GCAGC	2 cut(s)	758, 906
BsgI	GTGCAG	2 cut(s)	765, 913
Bsh1236I	CGCG	1 cut(s)	1172
BshFI	GGCC	3 cut(s)	245, 636, 806
BsiHKCI	CYCGRG	2 cut(s)	517, 1040
BsiSI	CCGG	8 cut(s)	131, 150, 368, 574, 645, 802, 813, 912
BslI	CCNNNNNNNGG	4 cut(s)	237, 266, 339, 911
BsmAI	GTCTC	7 cut(s)	367, 508, 633, 810, 1068, 1161, 1168
BsmBI	CGTCTC	3 cut(s)	633, 1068, 1161
BsmI	GAATGC	1 cut(s)	930
BsnI	GGCC	3 cut(s)	245, 636, 806
Bso31I	GGTCTC	1 cut(s)	1168
BsoBI	CYCGRG	2 cut(s)	517, 1040
Bsp119I	TTCGAA	1 cut(s)	1134
Bsp143I	GATC	3 cut(s)	726, 840, 850
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	245, 636, 806
BspCNI	CTCAG	1 cut(s)	976
BspFNI	CGCG	1 cut(s)	1172
BspPI	GGATC	1 cut(s)	845
BspQI	GCTCTTC	1 cut(s)	554
BspT104I	TTCGAA	1 cut(s)	1134
BspTI	CTTAAG	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	1168
BsrDI	GCAATG	1 cut(s)	1147
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	260, 304
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	623, 691
BssMI	GATC	3 cut(s)	726, 840, 850
BssNI	GRCGYC	2 cut(s)	642, 1077
BssT1I	CCWWGG	1 cut(s)	691
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	3 cut(s)	251, 590, 769
Bst6I	CTCTTC	2 cut(s)	468, 554
BstACI	GRCGYC	2 cut(s)	642, 1077
BstAFI	CTTAAG	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	1134
BstDEI	CTNAG	1 cut(s)	984
BstDSI	CCRYGG	1 cut(s)	623
BstF5I	GGATG	3 cut(s)	89, 139, 246
BstFNI	CGCG	1 cut(s)	1172
BstKTI	GATC	3 cut(s)	729, 843, 853
BstMAI	GTCTC	7 cut(s)	367, 508, 633, 810, 1068, 1161, 1168
BstMBI	GATC	3 cut(s)	726, 840, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	1036
BstNI	CCWGG	1 cut(s)	936
BstNSI	RCATGY	1 cut(s)	425
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSCI	CCNGG	4 cut(s)	149, 801, 811, 934
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	1172
BstV1I	GCAGC	2 cut(s)	758, 906
BstV2I	GAAGAC	3 cut(s)	51, 766, 1167
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BsuRI	GGCC	3 cut(s)	245, 636, 806
BtgI	CCRYGG	1 cut(s)	623
BtsCI	GGATG	3 cut(s)	89, 139, 246
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	4 cut(s)	342, 651, 804, 878
CseI	GACGC	3 cut(s)	329, 650, 1178
CviAII	CATG	3 cut(s)	422, 508, 866
DdeI	CTNAG	1 cut(s)	984
DpnI	GATC	3 cut(s)	728, 842, 852
DpnII	GATC	3 cut(s)	726, 840, 850
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	468, 554
EarI	CTCTTC	2 cut(s)	468, 554
Eco130I	CCWWGG	1 cut(s)	691
Eco31I	GGTCTC	1 cut(s)	1168
Eco47I	GGWCC	3 cut(s)	342, 651, 878
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	2 cut(s)	517, 1040
EcoRII	CCWGG	1 cut(s)	934
EcoT14I	CCWWGG	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	691
Esp3I	CGTCTC	3 cut(s)	633, 1068, 1161
FaeI	CATG	3 cut(s)	425, 511, 869
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FatI	CATG	3 cut(s)	421, 507, 865
Fnu4HI	GCNGC	3 cut(s)	6, 747, 895
FokI	GGATG	3 cut(s)	76, 146, 253
Fsp4HI	GCNGC	3 cut(s)	6, 747, 895
FspBI	CTAG	4 cut(s)	486, 692, 906, 1017
GluI	GCNGC	3 cut(s)	6, 747, 895
HaeIII	GGCC	3 cut(s)	245, 636, 806
HapII	CCGG	8 cut(s)	131, 150, 368, 574, 645, 802, 813, 912
HgaI	GACGC	3 cut(s)	329, 650, 1178
Hin1I	GRCGYC	2 cut(s)	642, 1077
Hin1II	CATG	3 cut(s)	425, 511, 869
HincII	GTYRAC	1 cut(s)	1216
HindII	GTYRAC	1 cut(s)	1216
HinfI	GANTC	5 cut(s)	537, 686, 862, 1013, 1126
HpaII	CCGG	8 cut(s)	131, 150, 368, 574, 645, 802, 813, 912
HphI	GGTGA	7 cut(s)	120, 136, 149, 314, 357, 1022, 1064
Hpy166II	GTNNAC	5 cut(s)	345, 654, 702, 980, 1216
Hpy188I	TCNGA	5 cut(s)	78, 418, 712, 736, 1068
Hpy188III	TCNNGA	5 cut(s)	238, 534, 593, 848, 1033
Hpy8I	GTNNAC	5 cut(s)	345, 654, 702, 980, 1216
Hpy99I	CGWCG	2 cut(s)	323, 590
HpyAV	CCTTC	4 cut(s)	578, 642, 1091, 1098
HpyCH4III	ACNGT	3 cut(s)	251, 590, 769
HpyCH4IV	ACGT	2 cut(s)	336, 1077
HpyCH4V	TGCA	5 cut(s)	746, 796, 894, 930, 1002
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1036
HpyF3I	CTNAG	1 cut(s)	984
HpySE526I	ACGT	2 cut(s)	336, 1077
Hsp92I	GRCGYC	2 cut(s)	642, 1077
Hsp92II	CATG	3 cut(s)	425, 511, 869
Kzo9I	GATC	3 cut(s)	726, 840, 850
LguI	GCTCTTC	1 cut(s)	554
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	2 cut(s)	758, 906
LweI	GCATC	1 cut(s)	1191
MaeI	CTAG	4 cut(s)	486, 692, 906, 1017
MaeII	ACGT	2 cut(s)	336, 1077
MaeIII	GTNAC	3 cut(s)	251, 829, 938
MalI	GATC	3 cut(s)	728, 842, 852
MboI	GATC	3 cut(s)	726, 840, 850
MboII	GAAGA	9 cut(s)	14, 17, 51, 455, 541, 771, 927, 1015, 1172
MflI	RGATCY	1 cut(s)	850
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	5 cut(s)	39, 172, 388, 991, 1056
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	1022
MmeI	TCCRAC	2 cut(s)	93, 357
MnlI	CCTC	9 cut(s)	76, 97, 299, 302, 392, 541, 589, 1001, 1150
Mox20I	TGGCCA	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	922
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	4 cut(s)	122, 314, 377, 950
Msp20I	TGGCCA	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	8 cut(s)	131, 150, 368, 574, 645, 802, 813, 912
MspR9I	CCNGG	4 cut(s)	151, 803, 813, 936
Mva1269I	GAATGC	1 cut(s)	930
MvaI	CCWGG	1 cut(s)	936
MvnI	CGCG	1 cut(s)	1172
MwoI	GCNNNNNNNGC	1 cut(s)	1036
NciI	CCSGG	3 cut(s)	151, 803, 813
NdeII	GATC	3 cut(s)	726, 840, 850
NlaIII	CATG	3 cut(s)	425, 511, 869
NmeAIII	GCCGAG	1 cut(s)	662
NmuCI	GTSAC	2 cut(s)	251, 829
NspI	RCATGY	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	1134
PaeR7I	CTCGAG	1 cut(s)	1040
PciSI	GCTCTTC	1 cut(s)	554
PctI	GAATGC	1 cut(s)	930
PdmI	GAANNNNTTC	1 cut(s)	922
PfeI	GAWTC	4 cut(s)	537, 686, 862, 1126
PflMI	CCANNNNNTGG	3 cut(s)	237, 266, 339
PkrI	GCNGC	3 cut(s)	7, 748, 896
PleI	GAGTC	1 cut(s)	1021
PpsI	GAGTC	1 cut(s)	1021
PshAI	GACNNNNGTC	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	934
PspPI	GGNCC	4 cut(s)	342, 651, 804, 878
PspXI	VCTCGAGB	1 cut(s)	1040
PsuI	RGATCY	1 cut(s)	850
SapI	GCTCTTC	1 cut(s)	554
SaqAI	TTAA	4 cut(s)	122, 314, 377, 950
SatI	GCNGC	3 cut(s)	6, 747, 895
Sau3AI	GATC	3 cut(s)	726, 840, 850
Sau96I	GGNCC	4 cut(s)	342, 651, 804, 878
SchI	GAGTC	1 cut(s)	1022
ScrFI	CCNGG	4 cut(s)	151, 803, 813, 936
SfaNI	GCATC	1 cut(s)	1191
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	1040
SfuI	TTCGAA	1 cut(s)	1134
SgrAI	CRCCGGYG	1 cut(s)	367
SinI	GGWCC	3 cut(s)	342, 651, 878
SlaI	CTCGAG	1 cut(s)	1040
SmlI	CTYRAG	3 cut(s)	376, 593, 1040
SmoI	CTYRAG	3 cut(s)	376, 593, 1040
Sse9I	AATT	5 cut(s)	39, 172, 388, 991, 1056
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	4 cut(s)	486, 692, 906, 1017
StyD4I	CCNGG	4 cut(s)	149, 801, 811, 934
StyI	CCWWGG	1 cut(s)	691
TaaI	ACNGT	3 cut(s)	251, 590, 769
TaiI	ACGT	2 cut(s)	339, 1080
TaqI	TCGA	5 cut(s)	470, 585, 1034, 1041, 1134
TasI	AATT	5 cut(s)	39, 172, 388, 991, 1056
TfiI	GAWTC	4 cut(s)	537, 686, 862, 1126
Tru1I	TTAA	4 cut(s)	122, 314, 377, 950
Tru9I	TTAA	4 cut(s)	122, 314, 377, 950
TseFI	GTSAC	2 cut(s)	251, 829
TseI	GCWGC	3 cut(s)	5, 746, 894
Tsp45I	GTSAC	2 cut(s)	251, 829
TspDTI	ATGAA	3 cut(s)	298, 696, 854
Van91I	CCANNNNNTGG	3 cut(s)	237, 266, 339
Vha464I	CTTAAG	1 cut(s)	376
VpaK11BI	GGWCC	3 cut(s)	342, 651, 878
XceI	RCATGY	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	2 cut(s)	238, 263
XhoI	CTCGAG	1 cut(s)	1040
XmaJI	CCTAGG	1 cut(s)	691
XmnI	GAANNNNTTC	1 cut(s)	922
XspI	CTAG	4 cut(s)	486, 692, 906, 1017
ZraI	GACGTC	1 cut(s)	1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.