Rh6CG493400

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004846
Physical Location & Seq
Forward (+)
65941210 .. 65941992
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG493400.1

Sequence Viewer

Length: 783 bp
ATGGACAGGGTTCCGTTTCTGTGCCTTGTTTTTGTTTTTGCACTAATTTTTCCATTCAAATCATCAACAGCTTTTAATTTGAGCATGGGATCCTTTCTTTCAGTAGAAAATCCATCTCAAACTTTGATGTCTCCGGACGCAGTATTTACCGCTGGCTTTTTTCCGGTCGGTGAAAATGCGTTTTGCTTCGGAATATGGTTCTCGGAGCCATCAACCAGTACTCACAACCTCACCGTGGTGTGGATAGCAAATCGTGACGAACCGGTCAACAGTCAACGCTCTAAGCTCACCCTGCACAAAAGTGGAAACCTTATTCTCTCCGACATCGACCGATACACCGTGTGGTCCTCCAACACAGCTTCAAACTCATCGGCCCACTTGCACCTTAGAAACACCGGCAATCTTGTTCTGCTCGCTGCGCACGGCGGCGGCGTATTGTGGGAAAGCTTTGCTTCGCCGACGGACACACTTTTGGCTCAGCAAGCACTCACTAGAAACACACAGCTCATTTCTTCAAGAAGCCTCACCAACTATTCCTCCGGCTTCTACTTTTTTTACTTCGACAACGACAACACTCTTCGTATGCTCTACATCGGCCCCGAGGTTTCGAGCATTTACTGGCCTGATCCATGGCTTCTGAGTTGGCAAGTAGGAAGATCCACATACAACAACAGTCGAACTGCAACTTTTGACAGCTTGGGAAATTTTAGTGCATCTGATAATTTTATCGTTTGGACAATCGACTACGGTGCAAATTGCAGCGAATATTCAGGATGGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

260

Amino Acids

29.08

Weight (kDa)

5.23

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 78 - 176 1.3e-24 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
Acc16I TGCGCA 1 cut(s) 420
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 3 cut(s) 150, 426, 429
AclWI GGATC 4 cut(s) 84, 97, 620, 651
AcsI RAATTY 1 cut(s) 703
AdeI CACNNNGTG 1 cut(s) 342
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 235, 240
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 3 cut(s) 58, 363, 516
AleI CACNNNNGTG 2 cut(s) 236, 300
AluBI AGCT 6 cut(s) 71, 286, 359, 447, 505, 696
AluI AGCT 6 cut(s) 71, 286, 359, 447, 505, 696
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 4 cut(s) 84, 97, 620, 651
Ama87I CYCGRG 1 cut(s) 599
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 3 cut(s) 372, 595, 620
ApeKI GCWGC 2 cut(s) 416, 759
ApoI RAATTY 1 cut(s) 703
AsiGI ACCGGT 1 cut(s) 262
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 3 cut(s) 345, 373, 596
AsuHPI GGTGA 4 cut(s) 182, 223, 280, 517
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 1 cut(s) 345
BamHI GGATCC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 403, 771
BccI CCATC 3 cut(s) 121, 217, 768
BceAI ACGGC 1 cut(s) 439
BcgI CGANNNNNNTGC 2 cut(s) 731, 765
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 492
BisI GCNGC 4 cut(s) 417, 427, 430, 760
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 4 cut(s) 418, 428, 431, 761
BmcAI AGTACT 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 3 cut(s) 345, 373, 596
BmiI GGNNCC 4 cut(s) 12, 91, 207, 598
BmsI GCATC 1 cut(s) 722
Bpu1102I GCTNAGC 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 234, 600, 629
BsaWI WCCGGW 3 cut(s) 133, 163, 262
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 240
Bse118I RCCGGY 2 cut(s) 262, 395
Bse1I ACTGG 2 cut(s) 216, 623
BseAI TCCGGA 1 cut(s) 133
BseDI CCNNGG 3 cut(s) 234, 600, 629
BseGI GGATG 2 cut(s) 779, 783
BseLI CCNNNNNNNGG 2 cut(s) 235, 240
BseMII CTCAG 2 cut(s) 491, 629
BseNI ACTGG 2 cut(s) 216, 623
BseXI GCAGC 2 cut(s) 403, 771
BsgI GTGCAG 1 cut(s) 278
Bsh1285I CGRYCG 2 cut(s) 168, 331
BshFI GGCC 3 cut(s) 374, 597, 622
BshTI ACCGGT 1 cut(s) 262
BsiEI CGRYCG 2 cut(s) 168, 331
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 5 cut(s) 134, 164, 263, 396, 540
BslI CCNNNNNNNGG 2 cut(s) 235, 240
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 3 cut(s) 374, 597, 622
BsoBI CYCGRG 1 cut(s) 599
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 3 cut(s) 89, 625, 656
Bsp1720I GCTNAGC 1 cut(s) 477
Bsp19I CCATGG 1 cut(s) 629
BspACI CCGC 3 cut(s) 150, 426, 429
BspANI GGCC 3 cut(s) 374, 597, 622
BspCNI CTCAG 2 cut(s) 490, 630
BspEI TCCGGA 1 cut(s) 133
BspLI GGNNCC 4 cut(s) 12, 91, 207, 598
BspPI GGATC 4 cut(s) 84, 97, 620, 651
BsrFI RCCGGY 2 cut(s) 262, 395
BsrI ACTGG 2 cut(s) 216, 623
BssAI RCCGGY 2 cut(s) 262, 395
BssECI CCNNGG 3 cut(s) 234, 600, 629
BssMI GATC 3 cut(s) 89, 625, 656
BssT1I CCWWGG 1 cut(s) 629
Bst4CI ACNGT 5 cut(s) 235, 272, 340, 674, 749
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 3 cut(s) 154, 414, 483
BstDEI CTNAG 4 cut(s) 282, 386, 477, 638
BstDSI CCRYGG 2 cut(s) 234, 629
BstF5I GGATG 2 cut(s) 779, 783
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 3 cut(s) 92, 628, 659
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 3 cut(s) 89, 625, 656
BstMCI CGRYCG 2 cut(s) 168, 331
BstMWI GCNNNNNNNGC 3 cut(s) 292, 418, 482
BstV1I GCAGC 2 cut(s) 403, 771
BstX2I RGATCY 2 cut(s) 89, 656
BstYI RGATCY 2 cut(s) 89, 656
BsuRI GGCC 3 cut(s) 374, 597, 622
BtgI CCRYGG 2 cut(s) 234, 629
BtsCI GGATG 2 cut(s) 779, 783
Cac8I GCNNGC 3 cut(s) 154, 414, 483
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 2 cut(s) 262, 395
Cfr13I GGNCC 3 cut(s) 345, 373, 596
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 219
CspAI ACCGGT 1 cut(s) 262
CviAII CATG 2 cut(s) 85, 630
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 4 cut(s) 282, 386, 477, 638
DpnI GATC 3 cut(s) 91, 627, 658
DpnII GATC 3 cut(s) 89, 625, 656
DraIII CACNNNGTG 1 cut(s) 342
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 629
Eco47I GGWCC 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 629
ErhI CCWWGG 1 cut(s) 629
FaeI CATG 2 cut(s) 88, 633
FaiI YATR 5 cut(s) 86, 196, 584, 631, 664
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FatI CATG 2 cut(s) 84, 629
Fnu4HI GCNGC 4 cut(s) 417, 427, 430, 760
Fsp4HI GCNGC 4 cut(s) 417, 427, 430, 760
FspBI CTAG 1 cut(s) 492
FspI TGCGCA 1 cut(s) 420
GlaI GCGC 1 cut(s) 420
GluI GCNGC 4 cut(s) 417, 427, 430, 760
HaeIII GGCC 3 cut(s) 374, 597, 622
HapII CCGG 5 cut(s) 134, 164, 263, 396, 540
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 421
Hin1II CATG 2 cut(s) 88, 633
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 2 cut(s) 268, 275
HindII GTYRAC 2 cut(s) 268, 275
HindIII AAGCTT 1 cut(s) 445
HpaII CCGG 5 cut(s) 134, 164, 263, 396, 540
HphI GGTGA 4 cut(s) 182, 223, 280, 517
Hpy166II GTNNAC 2 cut(s) 268, 275
Hpy188I TCNGA 5 cut(s) 191, 205, 322, 639, 718
Hpy188III TCNNGA 4 cut(s) 134, 254, 516, 771
Hpy8I GTNNAC 2 cut(s) 268, 275
Hpy99I CGWCG 1 cut(s) 463
HpyCH4III ACNGT 5 cut(s) 235, 272, 340, 674, 749
HpyCH4V TGCA 7 cut(s) 41, 295, 382, 683, 713, 752, 759
HpyF10VI GCNNNNNNNGC 3 cut(s) 292, 418, 482
HpyF3I CTNAG 4 cut(s) 282, 386, 477, 638
Hsp92II CATG 2 cut(s) 88, 633
HspAI GCGC 1 cut(s) 419
Kpn2I TCCGGA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 89, 625, 656
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 2 cut(s) 403, 771
LweI GCATC 1 cut(s) 722
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 254
MalI GATC 3 cut(s) 91, 627, 658
MboI GATC 3 cut(s) 89, 625, 656
MboII GAAGA 3 cut(s) 504, 569, 666
MflI RGATCY 2 cut(s) 89, 656
MluCI AATT 5 cut(s) 45, 76, 703, 721, 754
MmeI TCCRAC 2 cut(s) 345, 375
MnlI CCTC 5 cut(s) 239, 358, 533, 547, 595
MroI TCCGGA 1 cut(s) 133
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 2 cut(s) 236, 300
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 5 cut(s) 134, 164, 263, 396, 540
MwoI GCNNNNNNNGC 3 cut(s) 292, 418, 482
NcoI CCATGG 1 cut(s) 629
NdeII GATC 3 cut(s) 89, 625, 656
NlaIII CATG 2 cut(s) 88, 633
NlaIV GGNNCC 4 cut(s) 12, 91, 207, 598
NmuCI GTSAC 1 cut(s) 254
NsbI TGCGCA 1 cut(s) 420
OliI CACNNNNGTG 2 cut(s) 236, 300
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 4 cut(s) 418, 428, 431, 761
PspN4I GGNNCC 4 cut(s) 12, 91, 207, 598
PspPI GGNCC 3 cut(s) 345, 373, 596
PsuI RGATCY 2 cut(s) 89, 656
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 2 cut(s) 236, 300
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 4 cut(s) 417, 427, 430, 760
Sau3AI GATC 3 cut(s) 89, 625, 656
Sau96I GGNCC 3 cut(s) 345, 373, 596
ScaI AGTACT 1 cut(s) 220
SfaNI GCATC 1 cut(s) 722
SinI GGWCC 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 236, 300
Sse9I AATT 5 cut(s) 45, 76, 703, 721, 754
SsiI CCGC 3 cut(s) 150, 426, 429
SspI AATATT 1 cut(s) 767
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 5 cut(s) 235, 272, 340, 674, 749
TaqI TCGA 5 cut(s) 327, 561, 608, 676, 741
TaqII GACCGA 1 cut(s) 345
TasI AATT 5 cut(s) 45, 76, 703, 721, 754
TatI WGTACW 1 cut(s) 218
TauI GCSGC 2 cut(s) 429, 432
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 2 cut(s) 416, 759
Tsp45I GTSAC 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 345
XapI RAATTY 1 cut(s) 703
XspI CTAG 1 cut(s) 492
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.