Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017015.1

Orthogroup ID

OG0004846

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 923

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017015.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 862 bp

atccattgtttggtccacagccaccacttcagtctctccagctaacttaagcctccacaattccggcaatcttgttttgctcaactcggagcatgtcagtttatggcagagctttgattaccctactgatactcttcttccagaccaaccactcaccagaagcacaatccttgtctccatgagaagcccgagcaactactcctctggcttctacaagctcttctttgacaatgacaaccttctccggctactcttcgacggtcttgagatttcaagtttgtattggtttgagccgtggctcacaggccgacaagcaggaaggtccaaagacaacaacagtagagttgccgtgatggattccttaggcaagtttacttcatcagacaaatatactttgatcgcttccgattttggtgtagcttcgcaaagaagactgacggttgattgtgatggaaatgttcggttgcacagccggaccaaacccggagacagatgggttgtgacagggcagatcatggaaaatgcttgtatgattcatggggtttgtggtcctaatagtgtgtgtgactatgagcctagtactggaagaaaatgttcttgcattcctggttacaaaatggcaaactatactgattggtattatggttgtgaacctgagttcaattacacttgcggcagaggtgagtccagtttcttcaagctttcgaggctcgacttttacggctgtgtaactgcaagggtttccaatactctctccgcgataaactctctaactcccgcagtggaatatatggctgttatccgaaaatggtgttgctcaatggatacaggtctccaagctcttctaaagacacatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

286

Amino Acids

31.98

Weight (kDa)

6.9

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004846)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33830 FvH4_2g33840 FvH4_2g33850
malus_domestica	MD15G1076500.v1.1
prunus_persica	Prupe.1G429800_v2.0.a1 Prupe.1G429900_v2.0.a1
pyrus_communis	pycom08g07440
rosa_chinensis	RchiOBHm_Chr6g0308701 RchiOBHm_Chr6g0308721
rosa_laevigata	RLG00000010627 RLG00000010628
rosa_multiflora	Rmu_co8093658.1_g000001 Rmu_sc0000871.1_g000016 Rmu_sc0000871.1_g000018 Rmu_sc0017014.1_g000001 Rmu_sc0017015.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160000 Rroxscaffold_7G00160010
rosa_rugosa	Rorug06G0367800
rosa_samantha	Rh6AG478400 Rh6AG478800 Rh6BG488300 Rh6BG488400 Rh6CG492900 Rh6CG493200 Rh6CG493400 Rh6CG493600 Rh6CG493700 Rh6DG479200 Rh6DG479300
rosa_wichuraiana	Rw6G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	10
AccII	CGCG	1 cut(s)	759
AciI	CCGC	3 cut(s)	673, 757, 778
AcuI	CTGAAG	1 cut(s)	13
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	10, 582
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	274, 662, 698
AjnI	CCWGG	1 cut(s)	605
AluBI	AGCT	6 cut(s)	42, 112, 218, 420, 701, 840
AluI	AGCT	6 cut(s)	42, 112, 218, 420, 701, 840
Alw26I	GTCTC	4 cut(s)	38, 179, 481, 837
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	593
AspS9I	GGNCC	4 cut(s)	13, 322, 475, 549
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	146, 693
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	4 cut(s)	13, 322, 475, 549
AxyI	CCTNAGG	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	437
BccI	CCATC	3 cut(s)	347, 444, 487
BceAI	ACGGC	3 cut(s)	278, 333, 737
BciT130I	CCWGG	1 cut(s)	607
BciVI	GTATCC	1 cut(s)	818
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	4 cut(s)	38, 179, 481, 837
BfaI	CTAG	1 cut(s)	577
BfrI	CTTAAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	2 cut(s)	484, 607
Bme18I	GGWCC	4 cut(s)	13, 322, 475, 549
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	4 cut(s)	13, 322, 475, 549
BmrFI	CCNGG	2 cut(s)	484, 607
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	837
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	2 cut(s)	10, 582
Bse1I	ACTGG	2 cut(s)	587, 688
Bse21I	CCTNAGG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	10, 582
BseMII	CTCAG	1 cut(s)	646
BseNI	ACTGG	2 cut(s)	587, 688
BseRI	GAGGAG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	759
BshFI	GGCC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	64, 245, 473, 484
BslI	CCNNNNNNNGG	2 cut(s)	10, 582
BsmAI	GTCTC	4 cut(s)	38, 179, 481, 837
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	837
BsoBI	CYCGRG	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	397, 511
BspACI	CCGC	3 cut(s)	673, 757, 778
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	647
BspFNI	CGCG	1 cut(s)	759
BspQI	GCTCTTC	2 cut(s)	225, 847
BspTI	CTTAAG	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	837
BsrI	ACTGG	2 cut(s)	587, 688
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	397, 511
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	3 cut(s)	261, 339, 440
Bst6I	CTCTTC	4 cut(s)	139, 225, 258, 847
BstAFI	CTTAAG	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	362, 655
BstDSI	CCRYGG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	759
BstKTI	GATC	2 cut(s)	400, 514
BstMAI	GTCTC	4 cut(s)	38, 179, 481, 837
BstMBI	GATC	2 cut(s)	397, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNI	CCWGG	1 cut(s)	607
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	482, 605
BstUI	CGCG	1 cut(s)	759
BstV2I	GAAGAC	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	787
BtsIMutI	CAGTG	1 cut(s)	787
Cfr13I	GGNCC	4 cut(s)	13, 322, 475, 549
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	4 cut(s)	93, 179, 515, 537
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	2 cut(s)	362, 655
DpnI	GATC	2 cut(s)	399, 513
DpnII	GATC	2 cut(s)	397, 511
Eam1104I	CTCTTC	4 cut(s)	139, 225, 258, 847
EarI	CTCTTC	4 cut(s)	139, 225, 258, 847
Eco31I	GGTCTC	1 cut(s)	837
Eco47I	GGWCC	4 cut(s)	13, 322, 475, 549
Eco57I	CTGAAG	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	605
FaeI	CATG	4 cut(s)	96, 182, 518, 540
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	4 cut(s)	92, 178, 514, 536
FauI	CCCGC	1 cut(s)	785
Fnu4HI	GCNGC	1 cut(s)	674
Fsp4HI	GCNGC	1 cut(s)	674
FspBI	CTAG	1 cut(s)	577
GluI	GCNGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	4 cut(s)	64, 245, 473, 484
Hin1II	CATG	4 cut(s)	96, 182, 518, 540
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	3 cut(s)	357, 533, 684
HpaII	CCGG	4 cut(s)	64, 245, 473, 484
HphI	GGTGA	2 cut(s)	146, 693
Hpy166II	GTNNAC	3 cut(s)	16, 373, 651
Hpy188I	TCNGA	4 cut(s)	89, 383, 407, 804
Hpy188III	TCNNGA	2 cut(s)	141, 264
Hpy8I	GTNNAC	3 cut(s)	16, 373, 651
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	2 cut(s)	249, 313
HpyCH4III	ACNGT	3 cut(s)	261, 339, 440
HpyCH4V	TGCA	3 cut(s)	467, 601, 735
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	2 cut(s)	362, 655
Hsp92II	CATG	4 cut(s)	96, 182, 518, 540
Kzo9I	GATC	2 cut(s)	397, 511
LguI	GCTCTTC	2 cut(s)	225, 847
LmnI	GCTCC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	577
MaeIII	GTNAC	4 cut(s)	500, 564, 609, 728
MalI	GATC	2 cut(s)	399, 513
MboI	GATC	2 cut(s)	397, 511
MboII	GAAGA	8 cut(s)	126, 129, 212, 245, 442, 598, 686, 834
MluCI	AATT	2 cut(s)	59, 662
MlyI	GAGTC	1 cut(s)	693
MnlI	CCTC	4 cut(s)	63, 212, 672, 700
MroXI	GAANNNNTTC	1 cut(s)	593
MseI	TTAA	1 cut(s)	48
MspCI	CTTAAG	1 cut(s)	47
MspI	CCGG	4 cut(s)	64, 245, 473, 484
MspR9I	CCNGG	2 cut(s)	484, 607
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	607
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	1 cut(s)	707
NciI	CCSGG	1 cut(s)	484
NdeII	GATC	2 cut(s)	397, 511
NlaIII	CATG	4 cut(s)	96, 182, 518, 540
NmuCI	GTSAC	2 cut(s)	500, 564
NspI	RCATGY	1 cut(s)	96
PciSI	GCTCTTC	2 cut(s)	225, 847
PctI	GAATGC	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	357, 533
PflMI	CCANNNNNTGG	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	675
PleI	GAGTC	1 cut(s)	692
PpsI	GAGTC	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PspPI	GGNCC	4 cut(s)	13, 322, 475, 549
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SapI	GCTCTTC	2 cut(s)	225, 847
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	2 cut(s)	397, 511
Sau96I	GGNCC	4 cut(s)	13, 322, 475, 549
ScaI	AGTACT	1 cut(s)	581
SchI	GAGTC	1 cut(s)	693
ScrFI	CCNGG	2 cut(s)	484, 607
SinI	GGWCC	4 cut(s)	13, 322, 475, 549
SmlI	CTYRAG	2 cut(s)	47, 264
SmoI	CTYRAG	2 cut(s)	47, 264
Sse9I	AATT	2 cut(s)	59, 662
SsiI	CCGC	3 cut(s)	673, 757, 778
SspMI	CTAG	1 cut(s)	577
StyD4I	CCNGG	2 cut(s)	482, 605
TaaI	ACNGT	3 cut(s)	261, 339, 440
TaqI	TCGA	3 cut(s)	256, 705, 712
TasI	AATT	2 cut(s)	59, 662
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	2 cut(s)	357, 533
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	787
TseFI	GTSAC	2 cut(s)	500, 564
Tsp45I	GTSAC	2 cut(s)	500, 564
TspDTI	ATGAA	2 cut(s)	367, 525
TspRI	CASTG	1 cut(s)	787
Van91I	CCANNNNNTGG	1 cut(s)	10
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	4 cut(s)	13, 322, 475, 549
XceI	RCATGY	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	1 cut(s)	577
ZrmI	AGTACT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.