Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017014.1

Orthogroup ID

OG0004846

Physical Location & Seq

Genomic Coordinates Forward (+)

229 .. 1240

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017014.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggccaaccgtggccaaccagtcaatggcaaacactcaaagctctccctcctcaaaactggtgatctcatcttaaccgacgctggtcaatccattgtttggtccacagccaccacttcagtctctccagctaacttaagcctccacaattccggcaatcttgttttgctaaactcggagcatgtcagtctatggcagagctttgattaccctactgatactcttcttccagaccaaccactcaccagaagcacaatccttgtctccatgagaagcccgagcaacccctcctctggcttctacaagctcttctttgacaatgacaaccttctccggccacttttagatggtcttgagatttcaagtttgtattggtttgagccgtggctcacaggccgccaagcaggaaggtccaaagacaacaacagtagagttgccgtgatggattccttaggcaagtttacctcatcagacaaatatactttgatcgcttccgattgtggtgtagcttcgcaaagaagactgacggttgattgtgatggaaatgttcgattgcacagccggaccaaacccggagacagatgggttgtgacagggcagatcatggaaaatgcttgtatgattcatggggtttgtggtcctaatagtgtgtgtgactatgagcctagtactggaagaaaatgttattgcattcctggttacaaaatggcaaactatactgattggtattatggttgtgaacctgagttcaattacacttgcggcagaggtgagtccagtttcttcaagctttcgaggctcgacttttacggctgtgtaactgcaagggtttccaatactctctccgcgataaattctctaactcccgcagtggaatatatggctgttatccaaaaatggtgttgctcaatggatacaggtctccaagctcttctaaagacacatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

316

Amino Acids

35.02

Weight (kDa)

7.49

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004846)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33830 FvH4_2g33840 FvH4_2g33850
malus_domestica	MD15G1076500.v1.1
prunus_persica	Prupe.1G429800_v2.0.a1 Prupe.1G429900_v2.0.a1
pyrus_communis	pycom08g07440
rosa_chinensis	RchiOBHm_Chr6g0308701 RchiOBHm_Chr6g0308721
rosa_laevigata	RLG00000010627 RLG00000010628
rosa_multiflora	Rmu_co8093658.1_g000001 Rmu_sc0000871.1_g000016 Rmu_sc0000871.1_g000018 Rmu_sc0017014.1_g000001 Rmu_sc0017015.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160000 Rroxscaffold_7G00160010
rosa_rugosa	Rorug06G0367800
rosa_samantha	Rh6AG478400 Rh6AG478800 Rh6BG488300 Rh6BG488400 Rh6CG492900 Rh6CG493200 Rh6CG493400 Rh6CG493600 Rh6CG493700 Rh6DG479200 Rh6DG479300
rosa_wichuraiana	Rw6G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	26, 99
AccII	CGCG	1 cut(s)	848
AciI	CCGC	4 cut(s)	397, 762, 846, 867
AcoI	YGGCCR	3 cut(s)	3, 13, 335
AcsI	RAATTY	1 cut(s)	853
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	4 cut(s)	26, 99, 293, 671
AflII	CTTAAG	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	363, 751, 787
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	7 cut(s)	43, 131, 201, 307, 509, 790, 929
AluI	AGCT	7 cut(s)	43, 131, 201, 307, 509, 790, 929
Alw26I	GTCTC	4 cut(s)	127, 268, 570, 926
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	4 cut(s)	3, 13, 335, 394
ApoI	RAATTY	1 cut(s)	853
AspS9I	GGNCC	4 cut(s)	102, 411, 564, 638
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	3 cut(s)	74, 235, 782
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	4 cut(s)	102, 411, 564, 638
AxyI	CCTNAGG	1 cut(s)	451
BalI	TGGCCA	2 cut(s)	5, 15
BbsI	GAAGAC	1 cut(s)	526
BccI	CCATC	4 cut(s)	341, 436, 533, 576
BceAI	ACGGC	3 cut(s)	367, 422, 826
BciT130I	CCWGG	1 cut(s)	696
BciVI	GTATCC	1 cut(s)	907
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	4 cut(s)	127, 268, 570, 926
BfaI	CTAG	1 cut(s)	666
BfrI	CTTAAG	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	907
BisI	GCNGC	2 cut(s)	397, 763
BlsI	GCNGC	2 cut(s)	398, 764
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	2 cut(s)	573, 696
Bme18I	GGWCC	4 cut(s)	102, 411, 564, 638
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	4 cut(s)	102, 411, 564, 638
BmrFI	CCNGG	2 cut(s)	573, 696
BoxI	GACNNNNGTC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	926
BsaJI	CCNNGG	2 cut(s)	10, 383
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 99, 293, 671
Bse1I	ACTGG	4 cut(s)	20, 64, 676, 777
Bse21I	CCTNAGG	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	10, 383
BseLI	CCNNNNNNNGG	4 cut(s)	26, 99, 293, 671
BseMII	CTCAG	1 cut(s)	735
BseNI	ACTGG	4 cut(s)	20, 64, 676, 777
BseRI	GAGGAG	2 cut(s)	41, 280
Bsh1236I	CGCG	1 cut(s)	848
BshFI	GGCC	4 cut(s)	5, 15, 337, 396
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	4 cut(s)	153, 334, 562, 573
BslI	CCNNNNNNNGG	4 cut(s)	26, 99, 293, 671
BsmAI	GTCTC	4 cut(s)	127, 268, 570, 926
BsmI	GAATGC	1 cut(s)	690
BsnI	GGCC	4 cut(s)	5, 15, 337, 396
Bso31I	GGTCTC	1 cut(s)	926
BsoBI	CYCGRG	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	64, 486, 600
BspACI	CCGC	4 cut(s)	397, 762, 846, 867
BspANI	GGCC	4 cut(s)	5, 15, 337, 396
BspCNI	CTCAG	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	848
BspQI	GCTCTTC	2 cut(s)	314, 936
BspTI	CTTAAG	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	926
BsrI	ACTGG	4 cut(s)	20, 64, 676, 777
BssECI	CCNNGG	2 cut(s)	10, 383
BssMI	GATC	3 cut(s)	64, 486, 600
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	3 cut(s)	11, 428, 529
Bst6I	CTCTTC	3 cut(s)	228, 314, 936
BstAFI	CTTAAG	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	451, 744
BstDSI	CCRYGG	2 cut(s)	10, 383
BstFNI	CGCG	1 cut(s)	848
BstKTI	GATC	3 cut(s)	67, 489, 603
BstMAI	GTCTC	4 cut(s)	127, 268, 570, 926
BstMBI	GATC	3 cut(s)	64, 486, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	796
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	1 cut(s)	185
BstPAI	GACNNNNGTC	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	571, 694
BstUI	CGCG	1 cut(s)	848
BstV2I	GAAGAC	1 cut(s)	526
Bsu36I	CCTNAGG	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	4 cut(s)	5, 15, 337, 396
BtgI	CCRYGG	2 cut(s)	10, 383
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	1 cut(s)	876
Cfr13I	GGNCC	4 cut(s)	102, 411, 564, 638
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	669
CviAII	CATG	4 cut(s)	182, 268, 604, 626
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	2 cut(s)	451, 744
DpnI	GATC	3 cut(s)	66, 488, 602
DpnII	GATC	3 cut(s)	64, 486, 600
EaeI	YGGCCR	3 cut(s)	3, 13, 335
Eam1104I	CTCTTC	3 cut(s)	228, 314, 936
EarI	CTCTTC	3 cut(s)	228, 314, 936
Eco31I	GGTCTC	1 cut(s)	926
Eco47I	GGWCC	4 cut(s)	102, 411, 564, 638
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	451
Eco88I	CYCGRG	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	694
FaeI	CATG	4 cut(s)	185, 271, 607, 629
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	4 cut(s)	181, 267, 603, 625
FauI	CCCGC	1 cut(s)	874
Fnu4HI	GCNGC	2 cut(s)	397, 763
Fsp4HI	GCNGC	2 cut(s)	397, 763
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	2 cut(s)	397, 763
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	4 cut(s)	5, 15, 337, 396
HapII	CCGG	4 cut(s)	153, 334, 562, 573
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	4 cut(s)	185, 271, 607, 629
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	3 cut(s)	446, 622, 773
HpaII	CCGG	4 cut(s)	153, 334, 562, 573
HphI	GGTGA	3 cut(s)	74, 235, 782
Hpy166II	GTNNAC	3 cut(s)	105, 462, 740
Hpy188I	TCNGA	3 cut(s)	178, 472, 496
Hpy188III	TCNNGA	2 cut(s)	230, 353
Hpy8I	GTNNAC	3 cut(s)	105, 462, 740
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	338, 402
HpyCH4III	ACNGT	3 cut(s)	11, 428, 529
HpyCH4V	TGCA	3 cut(s)	556, 690, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	796
HpyF3I	CTNAG	2 cut(s)	451, 744
Hsp92II	CATG	4 cut(s)	185, 271, 607, 629
Kzo9I	GATC	3 cut(s)	64, 486, 600
LguI	GCTCTTC	2 cut(s)	314, 936
LmnI	GCTCC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	666
MaeIII	GTNAC	4 cut(s)	589, 653, 698, 817
MalI	GATC	3 cut(s)	66, 488, 602
MboI	GATC	3 cut(s)	64, 486, 600
MboII	GAAGA	7 cut(s)	215, 218, 301, 531, 687, 775, 923
MlsI	TGGCCA	2 cut(s)	5, 15
MluCI	AATT	3 cut(s)	148, 751, 853
MluNI	TGGCCA	2 cut(s)	5, 15
MlyI	GAGTC	1 cut(s)	782
MnlI	CCTC	8 cut(s)	59, 62, 152, 298, 301, 475, 761, 789
Mox20I	TGGCCA	2 cut(s)	5, 15
MscI	TGGCCA	2 cut(s)	5, 15
MseI	TTAA	2 cut(s)	74, 137
Msp20I	TGGCCA	2 cut(s)	5, 15
MspCI	CTTAAG	1 cut(s)	136
MspI	CCGG	4 cut(s)	153, 334, 562, 573
MspR9I	CCNGG	2 cut(s)	573, 696
Mva1269I	GAATGC	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	848
MwoI	GCNNNNNNNGC	1 cut(s)	796
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	3 cut(s)	64, 486, 600
NlaIII	CATG	4 cut(s)	185, 271, 607, 629
NmuCI	GTSAC	2 cut(s)	589, 653
NspI	RCATGY	1 cut(s)	185
PciSI	GCTCTTC	2 cut(s)	314, 936
PctI	GAATGC	1 cut(s)	690
PfeI	GAWTC	2 cut(s)	446, 622
PflMI	CCANNNNNTGG	2 cut(s)	26, 99
PkrI	GCNGC	2 cut(s)	398, 764
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PshAI	GACNNNNGTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspPI	GGNCC	4 cut(s)	102, 411, 564, 638
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
SapI	GCTCTTC	2 cut(s)	314, 936
SaqAI	TTAA	2 cut(s)	74, 137
SatI	GCNGC	2 cut(s)	397, 763
Sau3AI	GATC	3 cut(s)	64, 486, 600
Sau96I	GGNCC	4 cut(s)	102, 411, 564, 638
ScaI	AGTACT	1 cut(s)	670
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	2 cut(s)	573, 696
SinI	GGWCC	4 cut(s)	102, 411, 564, 638
SmlI	CTYRAG	2 cut(s)	136, 353
SmoI	CTYRAG	2 cut(s)	136, 353
Sse9I	AATT	3 cut(s)	148, 751, 853
SsiI	CCGC	4 cut(s)	397, 762, 846, 867
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	571, 694
TaaI	ACNGT	3 cut(s)	11, 428, 529
TaqI	TCGA	3 cut(s)	550, 794, 801
TasI	AATT	3 cut(s)	148, 751, 853
TatI	WGTACW	1 cut(s)	668
TauI	GCSGC	2 cut(s)	399, 765
TfiI	GAWTC	2 cut(s)	446, 622
Tru1I	TTAA	2 cut(s)	74, 137
Tru9I	TTAA	2 cut(s)	74, 137
TscAI	CASTG	1 cut(s)	876
TseFI	GTSAC	2 cut(s)	589, 653
Tsp45I	GTSAC	2 cut(s)	589, 653
TspDTI	ATGAA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	876
Van91I	CCANNNNNTGG	2 cut(s)	26, 99
Vha464I	CTTAAG	1 cut(s)	136
VpaK11BI	GGWCC	4 cut(s)	102, 411, 564, 638
XapI	RAATTY	1 cut(s)	853
XceI	RCATGY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XspI	CTAG	1 cut(s)	666
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.