Rh6DG479200

receptor protein kinase ZmPK1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004846
Physical Location & Seq
Forward (+)
64395971 .. 64396579
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG479200.1

Sequence Viewer

Length: 609 bp
ATGGGAAAGCTTTGCTTCACCAACGAACACTCTTTTGCCTTATCAGCCACTAACAAGGAACACCAAGAGCTCGTATCTTCTAGAAGCCTCACCAACTCCTCCTCCGGCTTCTACAAGCTCTTTTTCGATAATGACAACACCCTCCGGCCTCTCTACGATGGCCCCGAAGTTTCGAGTATTTACTGGCCTGACCCTTGGCTTCTAATTAGTTACCAAGCTGAGAGGTCCTCGTACAATAACAGTAGAATCGCAATTTTCGATGCATTAGGGCACCTCAGTGCATCCGATGACTTTACCGTTTTGTCCTCGGATTACGGTGCCAAGGTGCAGAGAATTGTGAAGGTGGATGTGGATGGTAACGTCCGAATGTACAGTCGAAAGAAGCCTGGAGAGACCTGGGGTGTTACGTGGCAAGCCATTTCGCAACCATGCAAAATTCATGGGCTCTGTGGAGCCAATAGTTGGTGTACCTATAATCCTAGTATGGGTAGGAAATGCTCCTGCCTACCCGGATATAAGGTGGTAAATAAAGATGATTGGTCTTATGGGTGTGAACCAGATTTCAATCGGTCTTGTGATGCTCCCGGTGATGATCGAGTTGGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

202

Amino Acids

22.61

Weight (kDa)

6.07

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 108 - 174 2.8e-08 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 270, 317
AccB7I CCANNNNNTGG 1 cut(s) 462
AcsI RAATTY 1 cut(s) 435
AfaI GTAC 3 cut(s) 233, 371, 469
AfiI CCNNNNNNNGG 2 cut(s) 462, 485
AgsI TTSAA 1 cut(s) 565
AjnI CCWGG 2 cut(s) 385, 395
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 4 cut(s) 10, 70, 118, 218
AluI AGCT 4 cut(s) 10, 70, 118, 218
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 386
AoxI GGCC 3 cut(s) 146, 160, 185
ApoI RAATTY 1 cut(s) 435
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AspS9I GGNCC 2 cut(s) 161, 225
AsuC2I CCSGG 2 cut(s) 510, 585
AsuHPI GGTGA 3 cut(s) 10, 82, 599
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 273
BanI GGYRCC 2 cut(s) 270, 317
BanII GRGCYC 2 cut(s) 72, 447
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 2 cut(s) 152, 347
BciT130I CCWGG 2 cut(s) 387, 397
BcnI CCSGG 2 cut(s) 510, 585
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 2 cut(s) 81, 480
Bme1390I CCNGG 4 cut(s) 387, 397, 510, 585
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 161, 225
BmiI GGNNCC 4 cut(s) 163, 272, 319, 454
BmrFI CCNGG 4 cut(s) 387, 397, 510, 585
BmsI GCATC 3 cut(s) 250, 290, 568
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 408
BpuMI CCSGG 2 cut(s) 510, 585
BsaAI YACGTR 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 4 cut(s) 194, 306, 321, 396
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 485
Bse1I ACTGG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 2 cut(s) 387, 397
BseDI CCNNGG 4 cut(s) 194, 306, 321, 396
BseGI GGATG 3 cut(s) 281, 352, 358
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 2 cut(s) 462, 485
BseMII CTCAG 2 cut(s) 210, 289
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 2 cut(s) 88, 91
BseSI GKGCMC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 3 cut(s) 148, 162, 187
BshNI GGYRCC 2 cut(s) 270, 317
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 4 cut(s) 105, 145, 510, 585
BslI CCNNNNNNNGG 2 cut(s) 462, 485
BsmAI GTCTC 1 cut(s) 386
BsnI GGCC 3 cut(s) 148, 162, 187
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 3 cut(s) 72, 273, 447
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 1 cut(s) 592
BspANI GGCC 3 cut(s) 148, 162, 187
BspCNI CTCAG 2 cut(s) 211, 288
BspLI GGNNCC 4 cut(s) 163, 272, 319, 454
BspT107I GGYRCC 2 cut(s) 270, 317
BspTNI GGTCTC 1 cut(s) 386
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 194, 306, 321, 396
BssMI GATC 1 cut(s) 592
BssT1I CCWWGG 2 cut(s) 194, 321
Bst2UI CCWGG 2 cut(s) 387, 397
Bst4CI ACNGT 4 cut(s) 242, 298, 317, 374
BstAUI TGTACA 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 2 cut(s) 219, 275
BstF5I GGATG 3 cut(s) 281, 352, 358
BstKTI GATC 1 cut(s) 595
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 1 cut(s) 592
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 2 cut(s) 387, 397
BstSCI CCNGG 4 cut(s) 385, 395, 508, 583
BstSLI GKGCMC 1 cut(s) 273
BsuRI GGCC 3 cut(s) 148, 162, 187
BtsCI GGATG 3 cut(s) 281, 352, 358
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 414
Cfr13I GGNCC 2 cut(s) 161, 225
Csp6I GTAC 3 cut(s) 232, 370, 468
CviAII CATG 2 cut(s) 429, 440
CviQI GTAC 3 cut(s) 232, 370, 468
DdeI CTNAG 2 cut(s) 219, 275
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 194, 321
Eco24I GRGCYC 2 cut(s) 72, 447
Eco31I GGTCTC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 385, 395
EcoT14I CCWWGG 2 cut(s) 194, 321
EcoT22I ATGCAT 1 cut(s) 265
EcoT38I GRGCYC 2 cut(s) 72, 447
ErhI CCWWGG 2 cut(s) 194, 321
FaeI CATG 2 cut(s) 432, 443
FaiI YATR 7 cut(s) 430, 441, 474, 485, 516, 546, 607
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 2 cut(s) 428, 439
FokI GGATG 3 cut(s) 268, 359, 365
FriOI GRGCYC 2 cut(s) 72, 447
FspBI CTAG 2 cut(s) 81, 480
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 3 cut(s) 148, 162, 187
HapII CCGG 4 cut(s) 105, 145, 510, 585
Hin1II CATG 2 cut(s) 432, 443
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 246
HpaII CCGG 4 cut(s) 105, 145, 510, 585
HphI GGTGA 3 cut(s) 10, 82, 599
Hpy166II GTNNAC 2 cut(s) 468, 554
Hpy188I TCNGA 3 cut(s) 286, 310, 365
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 468, 554
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 4 cut(s) 242, 298, 317, 374
HpyCH4IV ACGT 2 cut(s) 360, 407
HpyCH4V TGCA 4 cut(s) 263, 281, 328, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 219, 275
HpySE526I ACGT 2 cut(s) 360, 407
Hsp92II CATG 2 cut(s) 432, 443
Kzo9I GATC 1 cut(s) 592
LmnI GCTCC 3 cut(s) 452, 503, 586
LweI GCATC 3 cut(s) 250, 290, 568
MaeI CTAG 2 cut(s) 81, 480
MaeII ACGT 2 cut(s) 360, 407
MaeIII GTNAC 3 cut(s) 209, 356, 403
MalI GATC 1 cut(s) 594
MboI GATC 1 cut(s) 592
MboII GAAGA 1 cut(s) 69
MhlI GDGCHC 3 cut(s) 72, 273, 447
MluCI AATT 4 cut(s) 204, 252, 333, 435
MnlI CCTC 9 cut(s) 98, 109, 112, 152, 159, 216, 238, 284, 316
Mph1103I ATGCAT 1 cut(s) 265
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 4 cut(s) 105, 145, 510, 585
MspR9I CCNGG 4 cut(s) 387, 397, 510, 585
MvaI CCWGG 2 cut(s) 387, 397
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 2 cut(s) 510, 585
NdeII GATC 1 cut(s) 592
NlaIII CATG 2 cut(s) 432, 443
NlaIV GGNNCC 4 cut(s) 163, 272, 319, 454
NsiI ATGCAT 1 cut(s) 265
OliI CACNNNNGTG 1 cut(s) 276
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 255
PfeI GAWTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 462
Ppu21I YACGTR 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 385, 395
PspGI CCWGG 2 cut(s) 385, 395
PspN4I GGNNCC 4 cut(s) 163, 272, 319, 454
PspPI GGNCC 2 cut(s) 161, 225
PspPPI RGGWCCY 1 cut(s) 225
RsaI GTAC 3 cut(s) 233, 371, 469
RsaNI GTAC 3 cut(s) 232, 370, 468
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 592
Sau96I GGNCC 2 cut(s) 161, 225
ScrFI CCNGG 4 cut(s) 387, 397, 510, 585
SduI GDGCHC 3 cut(s) 72, 273, 447
SfaNI GCATC 3 cut(s) 250, 290, 568
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 4 cut(s) 204, 252, 333, 435
SspMI CTAG 2 cut(s) 81, 480
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 4 cut(s) 385, 395, 508, 583
StyI CCWWGG 2 cut(s) 194, 321
TaaI ACNGT 4 cut(s) 242, 298, 317, 374
TaiI ACGT 2 cut(s) 363, 410
TaqI TCGA 5 cut(s) 126, 173, 258, 376, 595
TaqII GACCGA 1 cut(s) 558
TasI AATT 4 cut(s) 204, 252, 333, 435
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 1 cut(s) 246
TscAI CASTG 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 428
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 462
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 435
XbaI TCTAGA 1 cut(s) 80
XspI CTAG 2 cut(s) 81, 480
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.