Rorug06G0367800

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004846
Physical Location & Seq
Reverse (-)
51515937 .. 51535898
19962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0367800.1

Sequence Viewer

Length: 1164 bp
ATGGGGTACTCTCCTAAACTTATTATTTCTCTGTTCTGCTCCTATATGCTTATATTGCATATTACCAGTAGTACCTTGGCTTTGAAAGACTGCGAGTTTCCAGCCATCTTCAACTTCGGAGACTCAAATTCAGATACTGGTGGACTAGCCGCATCCCTTCTACCACCAACCACACCTTATGGAGAGACCTATTTCCATATGCCGGTCGGAAGATTCTCTGATGGAAGACTCATTATCGACTTCCTTGCAAAGAGTCTTGGTCATCCTTATCTAAGCGCATATCTGGATTCTCTCGGGACAAATTTCTCGCATGGTGCAAATTTCGCCACTGCAGCTTCCACTATCAGACTCCCAGATCTCATTATACCAGCCGGTGGATTTAGTCCCTTCTACCTTGATATTCAATATGTGCAGTTCCTGCAGCTAAAATCCAGATCACAACTCATAAGGCATCGAGGGGGAATATTTGCAAGTTTAATGCCCAAGGAGGAGTACTTCTCCAATGCTTTATACACATTCGACATTGGCCAGAATGATCTTGGCGAGGGATTTTTCAGTAACCTGACTATACAGGAAGTAAATGCATCTGTTCCTGATATAATCACTGGTTTCTCAACGAATATCAAGAAAATATATGATTTGGGGGCAAGATCATTTTGGATCCACAATACGGGGCCGATTGGCTGTGTCCCTTACATTTTGGTGAAATTCCCATCAGCTCAGAAAGATGAGGTTGGCTGTGCAAAGGCTTACAATGAAGTAGCTCAACATTTTAACCACGAGCTGAAGCAGGCCATAGTTCAACTCAGGAAGGATCTTCCTTTGGCTGCATTCACTTATGTAGATGTGTATTCCGTCAAATATTCTATTTTCAAGGAACCCAAAAAATATGGATTTGAGCTCCCACTTGTTGCTTGTTGTGGCTATGGTGGTAAGTACAACTATAACAGTAGTACAGGATGTGGAACAACAATCACAGTCAATGGAAGTCAAATCTTTGTTGGCTCATGCAAGAACCCATCAGCTAGAGTGAACTGGGATGGGATTCATTATACTGAGGCAGCTGCGAAATTTGTTTTTGAGAAAATCTCAACTGGAGCATATTCAGATCCACCTCTGCCATTGAAACAAGCATGCCACAGGAGTGGAAATAAGAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

387

Amino Acids

42.62

Weight (kDa)

8.42

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 36 - 363 3.7e-47 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AciI CCGC 1 cut(s) 150
AclWI GGATC 4 cut(s) 655, 668, 822, 1103
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 5 cut(s) 127, 301, 319, 707, 1070
AcuI CTGAAG 1 cut(s) 806
AfaI GTAC 5 cut(s) 8, 73, 494, 938, 955
AfiI CCNNNNNNNGG 3 cut(s) 202, 374, 670
AgsI TTSAA 6 cut(s) 85, 112, 404, 803, 874, 1126
AleI CACNNNNGTG 1 cut(s) 1143
AluBI AGCT 8 cut(s) 335, 424, 719, 764, 784, 901, 1025, 1064
AluI AGCT 8 cut(s) 335, 424, 719, 764, 784, 901, 1025, 1064
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 2 cut(s) 114, 179
AlwI GGATC 4 cut(s) 655, 668, 822, 1103
AlwNI CAGNNNCTG 2 cut(s) 137, 418
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 3 cut(s) 526, 674, 792
ApeKI GCWGC 5 cut(s) 332, 421, 827, 1061, 1064
ApoI RAATTY 5 cut(s) 127, 301, 319, 707, 1070
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 674
AsuHPI GGTGA 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 293
BalI TGGCCA 1 cut(s) 528
BamHI GGATCC 1 cut(s) 660
BanII GRGCYC 1 cut(s) 903
BauI CACGAG 1 cut(s) 779
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 5 cut(s) 344, 433, 814, 1051, 1073
BccI CCATC 5 cut(s) 113, 215, 721, 1027, 1034
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BcoDI GTCTC 2 cut(s) 114, 179
BfaI CTAG 2 cut(s) 146, 1026
BfmI CTRYAG 2 cut(s) 330, 419
BglII AGATCT 1 cut(s) 355
BisI GCNGC 6 cut(s) 150, 333, 422, 828, 1062, 1065
BlsI GCNGC 6 cut(s) 151, 334, 423, 829, 1063, 1066
BmcAI AGTACT 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 3 cut(s) 662, 675, 879
BmrI ACTGGG 1 cut(s) 1045
BmsI GCATC 3 cut(s) 161, 460, 593
BmuI ACTGGG 1 cut(s) 1045
BpiI GAAGAC 1 cut(s) 232
BplI GAGNNNNNCTC 4 cut(s) 482, 514, 1073, 1105
BpmI CTGGAG 1 cut(s) 1116
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 75, 483
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 374, 670
Bse118I RCCGGY 2 cut(s) 202, 371
Bse1I ACTGG 5 cut(s) 66, 142, 610, 1040, 1099
BseDI CCNNGG 2 cut(s) 75, 483
BseGI GGATG 4 cut(s) 152, 262, 965, 1045
BseLI CCNNNNNNNGG 3 cut(s) 202, 374, 670
BseMII CTCAG 3 cut(s) 734, 820, 1047
BseNI ACTGG 5 cut(s) 66, 142, 610, 1040, 1099
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 5 cut(s) 344, 433, 814, 1051, 1073
BsgI GTGCAG 1 cut(s) 431
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 528, 676, 794
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 903
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 2 cut(s) 203, 372
BslFI GGGAC 3 cut(s) 310, 369, 674
BslI CCNNNNNNNGG 3 cut(s) 202, 374, 670
BsmAI GTCTC 2 cut(s) 114, 179
BsmFI GGGAC 3 cut(s) 310, 369, 674
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 3 cut(s) 528, 676, 794
Bso31I GGTCTC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 903
Bsp143I GATC 7 cut(s) 355, 434, 535, 650, 660, 814, 1108
BspACI CCGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 528, 676, 794
BspCNI CTCAG 3 cut(s) 733, 819, 1048
BspLI GGNNCC 3 cut(s) 662, 675, 879
BspMAI CTGCAG 2 cut(s) 334, 423
BspPI GGATC 4 cut(s) 655, 668, 822, 1103
BspTNI GGTCTC 1 cut(s) 179
BsrFI RCCGGY 2 cut(s) 202, 371
BsrI ACTGG 5 cut(s) 66, 142, 610, 1040, 1099
BssAI RCCGGY 2 cut(s) 202, 371
BssECI CCNNGG 2 cut(s) 75, 483
BssMI GATC 7 cut(s) 355, 434, 535, 650, 660, 814, 1108
BssSI CACGAG 1 cut(s) 779
BssT1I CCWWGG 2 cut(s) 75, 483
Bst2BI CACGAG 1 cut(s) 779
Bst4CI ACNGT 2 cut(s) 950, 979
BstAPI GCANNNNNTGC 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 792, 1135
BstDEI CTNAG 4 cut(s) 272, 720, 806, 1056
BstF5I GGATG 4 cut(s) 152, 262, 965, 1045
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 7 cut(s) 358, 437, 538, 653, 663, 817, 1111
BstMAI GTCTC 2 cut(s) 114, 179
BstMBI GATC 7 cut(s) 355, 434, 535, 650, 660, 814, 1108
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 4 cut(s) 55, 323, 332, 418
BstNSI RCATGY 1 cut(s) 1137
BstSFI CTRYAG 2 cut(s) 330, 419
BstV1I GCAGC 5 cut(s) 344, 433, 814, 1051, 1073
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 4 cut(s) 355, 660, 814, 1108
BstXI CCANNNNNNTGG 1 cut(s) 1145
BstYI RGATCY 4 cut(s) 355, 660, 814, 1108
BsuRI GGCC 3 cut(s) 528, 676, 794
BtsCI GGATG 4 cut(s) 152, 262, 965, 1045
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 327, 603
Cac8I GCNNGC 2 cut(s) 792, 1135
CaiI CAGNNNCTG 2 cut(s) 137, 418
CfoI GCGC 1 cut(s) 278
Cfr10I RCCGGY 2 cut(s) 202, 371
Cfr13I GGNCC 1 cut(s) 674
Csp6I GTAC 5 cut(s) 7, 72, 493, 937, 954
CviAII CATG 3 cut(s) 311, 1008, 1134
CviQI GTAC 5 cut(s) 7, 72, 493, 937, 954
DdeI CTNAG 4 cut(s) 272, 720, 806, 1056
DpnI GATC 7 cut(s) 357, 436, 537, 652, 662, 816, 1110
DpnII GATC 7 cut(s) 355, 434, 535, 650, 660, 814, 1108
EaeI YGGCCR 1 cut(s) 526
Ecl136II GAGCTC 1 cut(s) 901
Eco130I CCWWGG 2 cut(s) 75, 483
Eco24I GRGCYC 1 cut(s) 903
Eco31I GGTCTC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 806
Eco88I CYCGRG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 901
EcoT14I CCWWGG 2 cut(s) 75, 483
EcoT22I ATGCAT 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 903
ErhI CCWWGG 2 cut(s) 75, 483
FaeI CATG 3 cut(s) 314, 1011, 1137
FaqI GGGAC 3 cut(s) 310, 369, 674
FatI CATG 3 cut(s) 310, 1007, 1133
FauNDI CATATG 1 cut(s) 198
Fnu4HI GCNGC 6 cut(s) 150, 333, 422, 828, 1062, 1065
FokI GGATG 4 cut(s) 139, 249, 972, 1052
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 6 cut(s) 150, 333, 422, 828, 1062, 1065
FspBI CTAG 2 cut(s) 146, 1026
GlaI GCGC 1 cut(s) 277
GluI GCNGC 6 cut(s) 150, 333, 422, 828, 1062, 1065
GsuI CTGGAG 1 cut(s) 1116
HaeIII GGCC 3 cut(s) 528, 676, 794
HapII CCGG 2 cut(s) 203, 372
HhaI GCGC 1 cut(s) 278
Hin1II CATG 3 cut(s) 314, 1011, 1137
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 7 cut(s) 122, 213, 228, 253, 287, 348, 1045
HpaII CCGG 2 cut(s) 203, 372
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 2 cut(s) 143, 1033
Hpy188I TCNGA 7 cut(s) 119, 133, 209, 220, 347, 723, 1108
Hpy188III TCNNGA 6 cut(s) 284, 295, 432, 593, 625, 808
Hpy8I GTNNAC 2 cut(s) 143, 1033
HpyAV CCTTC 3 cut(s) 167, 397, 805
HpyCH4III ACNGT 2 cut(s) 950, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 323, 332, 418
HpyF3I CTNAG 4 cut(s) 272, 720, 806, 1056
Hsp92II CATG 3 cut(s) 314, 1011, 1137
HspAI GCGC 1 cut(s) 276
Kzo9I GATC 7 cut(s) 355, 434, 535, 650, 660, 814, 1108
LmnI GCTCC 3 cut(s) 44, 906, 1097
Lsp1109I GCAGC 5 cut(s) 344, 433, 814, 1051, 1073
LweI GCATC 3 cut(s) 161, 460, 593
MaeI CTAG 2 cut(s) 146, 1026
MaeIII GTNAC 1 cut(s) 557
MalI GATC 7 cut(s) 357, 436, 537, 652, 662, 816, 1110
MboI GATC 7 cut(s) 355, 434, 535, 650, 660, 814, 1108
MboII GAAGA 4 cut(s) 100, 222, 237, 809
MflI RGATCY 4 cut(s) 355, 660, 814, 1108
MhlI GDGCHC 1 cut(s) 903
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 5 cut(s) 127, 301, 319, 707, 1070
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 4 cut(s) 116, 222, 262, 342
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 6 cut(s) 449, 481, 538, 724, 1051, 1125
Mox20I TGGCCA 1 cut(s) 528
Mph1103I ATGCAT 1 cut(s) 586
MscI TGGCCA 1 cut(s) 528
MseI TTAA 2 cut(s) 476, 774
MslI CAYNNNNRTG 2 cut(s) 701, 1143
Msp20I TGGCCA 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 1064
MspI CCGG 2 cut(s) 203, 372
Mva1269I GAATGC 1 cut(s) 830
MwoI GCNNNNNNNGC 4 cut(s) 55, 323, 332, 418
NdeI CATATG 1 cut(s) 198
NdeII GATC 7 cut(s) 355, 434, 535, 650, 660, 814, 1108
NlaIII CATG 3 cut(s) 314, 1011, 1137
NlaIV GGNNCC 3 cut(s) 662, 675, 879
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 1 cut(s) 1137
OliI CACNNNNGTG 1 cut(s) 1143
PaeI GCATGC 1 cut(s) 1137
PctI GAATGC 1 cut(s) 830
PfeI GAWTC 3 cut(s) 213, 287, 1045
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 6 cut(s) 151, 334, 423, 829, 1063, 1066
PleI GAGTC 4 cut(s) 116, 222, 261, 342
PpsI GAGTC 4 cut(s) 116, 222, 261, 342
Psp124BI GAGCTC 1 cut(s) 903
PspN4I GGNNCC 3 cut(s) 662, 675, 879
PspPI GGNCC 1 cut(s) 674
PstI CTGCAG 2 cut(s) 334, 423
PstNI CAGNNNCTG 2 cut(s) 137, 418
PsuI RGATCY 4 cut(s) 355, 660, 814, 1108
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 5 cut(s) 8, 73, 494, 938, 955
RsaNI GTAC 5 cut(s) 7, 72, 493, 937, 954
RseI CAYNNNNRTG 2 cut(s) 701, 1143
SacI GAGCTC 1 cut(s) 903
SaqAI TTAA 2 cut(s) 476, 774
SatI GCNGC 6 cut(s) 150, 333, 422, 828, 1062, 1065
Sau3AI GATC 7 cut(s) 355, 434, 535, 650, 660, 814, 1108
Sau96I GGNCC 1 cut(s) 674
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 4 cut(s) 116, 222, 262, 342
SduI GDGCHC 1 cut(s) 903
SfaNI GCATC 3 cut(s) 161, 460, 593
SfcI CTRYAG 2 cut(s) 330, 419
SmiMI CAYNNNNRTG 2 cut(s) 701, 1143
SphI GCATGC 1 cut(s) 1137
Sse9I AATT 5 cut(s) 127, 301, 319, 707, 1070
SsiI CCGC 1 cut(s) 150
SspI AATATT 2 cut(s) 465, 863
SspMI CTAG 2 cut(s) 146, 1026
SstI GAGCTC 1 cut(s) 903
StyI CCWWGG 2 cut(s) 75, 483
TaaI ACNGT 2 cut(s) 950, 979
TaqI TCGA 3 cut(s) 237, 454, 519
TasI AATT 5 cut(s) 127, 301, 319, 707, 1070
TatI WGTACW 3 cut(s) 492, 936, 953
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 3 cut(s) 213, 287, 1045
Tru1I TTAA 2 cut(s) 476, 774
Tru9I TTAA 2 cut(s) 476, 774
TscAI CASTG 2 cut(s) 334, 610
TseI GCWGC 5 cut(s) 332, 421, 827, 1061, 1064
TspDTI ATGAA 2 cut(s) 771, 1037
TspGWI ACGGA 1 cut(s) 844
TspRI CASTG 2 cut(s) 334, 610
Van91I CCANNNNNTGG 1 cut(s) 374
XapI RAATTY 5 cut(s) 127, 301, 319, 707, 1070
XceI RCATGY 1 cut(s) 1137
XcmI CCANNNNNNNNNTGG 2 cut(s) 73, 536
XspI CTAG 2 cut(s) 146, 1026
ZrmI AGTACT 1 cut(s) 494
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.