Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004846

Physical Location & Seq

Genomic Coordinates Reverse (-)

3108888 .. 3110315

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTAGGAAATGCTCCTGCCTAACAGGATATAAGGTGGCAAATAAAGATGATTGGTCTTATGGGTATGAACCAGATTTCAATCGGTCTTGTGATGCTCCCGGTGATGATCGAGTTGGGTTTATGCATCTCCCTCGAGTTGAAATGTATGGGTTTGATTTTGGGATCTATTATAATACCAACTTACAATCCCAATTGAGAAATGGATTCCGTTCGCCTAATTTTGACGGTGACTTGTACCTCAAGCTACCCAAATCCACACTTTCTTCATGTGATGTCCGTGGTGATAATGAATCCACTAGTAACAACATGTGTACAGACAAGGTCTCAAAACAGCTAAACCGAACCTATGAGAAAGGCAATACAAATGGGTCTATCGAGCTTATGTTGAGATTAGCAGCGGGGCTTGGGGGAGTTGAGATTGTTTGCATCTTCCTTGTGTGGTTTTTTCTAAATGCAACAAGGGAAAAGGAGCGAGAAGAATCAGATGATTTTATTACTCAAGGAGGAGGAGGAGGAATTGTGTACAAGGGCACATTGTCCGATCAACGAGTTGCAGCAATCAAACAATTGAATGTTGCTAACCAAGGAGAAGCAGAGTTCCTTGCAGAAGTGAGCCTTATCGAATGCTTGGAATGGGTCTTGCACTGCGATACAAAGCCTCAGAACATACTCTTGGAGTACAATCCGAAGGTAGCAGATTTTGGGCTATCCAAGCTATTAAATAGAGGTGAGCTTCGCAACTTCTCGAGGACTAGAGGAACTAGAGGTTACATGTCTCCAAAGTGGGTTCATAACATGCCCATCACTTCAAAAGTGGATGTTTACAGCTATGGGATTGTTGTCTTGGAAATGCTCACCGGCAAGATGATAACAGAAAGTGTTCAATTTTCATTGAAGGAGGAGGGGAGACACAGAAAAAGTTGCTTGTTTCAAGGGTTTAGGAGAAGACGGATATGGCATCTGCAAATGAAGAGAACCAGTTTAGAGCAGCTGAAGATGCCCCCAAGCTGGAACTTCTTGCTAAAGTGGCTCTTCAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

349

Amino Acids

39.89

Weight (kDa)

8.74

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	214 - 299	1.1e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	214 - 291	9.2e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004846)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33830 FvH4_2g33840 FvH4_2g33850
malus_domestica	MD15G1076500.v1.1
prunus_persica	Prupe.1G429800_v2.0.a1 Prupe.1G429900_v2.0.a1
pyrus_communis	pycom08g07440
rosa_chinensis	RchiOBHm_Chr6g0308701 RchiOBHm_Chr6g0308721
rosa_laevigata	RLG00000010627 RLG00000010628
rosa_multiflora	Rmu_co8093658.1_g000001 Rmu_sc0000871.1_g000016 Rmu_sc0000871.1_g000018 Rmu_sc0017014.1_g000001 Rmu_sc0017015.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160000 Rroxscaffold_7G00160010
rosa_rugosa	Rorug06G0367800
rosa_samantha	Rh6AG478400 Rh6AG478800 Rh6BG488300 Rh6BG488400 Rh6CG492900 Rh6CG493200 Rh6CG493400 Rh6CG493600 Rh6CG493700 Rh6DG479200 Rh6DG479300
rosa_wichuraiana	Rw6G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	1016
AfaI	GTAC	4 cut(s)	239, 316, 527, 683
AfiI	CCNNNNNNNGG	1 cut(s)	1011
AflIII	ACRYGT	2 cut(s)	309, 774
AgsI	TTSAA	8 cut(s)	82, 143, 574, 813, 887, 898, 935, 1039
AhlI	ACTAGT	1 cut(s)	299
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	8 cut(s)	247, 337, 382, 718, 736, 831, 994, 1011
AluI	AGCT	8 cut(s)	247, 337, 382, 718, 736, 831, 994, 1011
Alw26I	GTCTC	3 cut(s)	331, 783, 904
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	2 cut(s)	135, 748
ApeKI	GCWGC	3 cut(s)	398, 557, 991
Asp700I	GAANNNNTTC	1 cut(s)	882
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	5 cut(s)	116, 242, 296, 743, 850
AvaI	CYCGRG	2 cut(s)	135, 748
BaeGI	GKGCMC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	955
BbvI	GCAGC	3 cut(s)	410, 569, 1003
BccI	CCATC	1 cut(s)	812
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	3 cut(s)	331, 783, 904
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	4 cut(s)	6, 300, 756, 765
BisI	GCNGC	3 cut(s)	399, 558, 992
BlsI	GCNGC	3 cut(s)	400, 559, 993
Bme1390I	CCNGG	1 cut(s)	102
BmeT110I	CYCGRG	2 cut(s)	135, 748
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	5 cut(s)	85, 136, 438, 970, 990
BpiI	GAAGAC	1 cut(s)	955
BpuEI	CTTGAG	2 cut(s)	227, 486
BpuMI	CCSGG	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	280, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	1011
Bse118I	RCCGGY	1 cut(s)	860
Bse1I	ACTGG	1 cut(s)	981
Bse8I	GATNNNNATC	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	280, 586
BseGI	GGATG	1 cut(s)	826
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	1011
BseMII	CTCAG	1 cut(s)	677
BseNI	ACTGG	1 cut(s)	981
BseRI	GAGGAG	4 cut(s)	522, 525, 528, 917
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	410, 569, 1003
BsiHKCI	CYCGRG	2 cut(s)	135, 748
BsiSI	CCGG	2 cut(s)	102, 861
BslI	CCNNNNNNNGG	1 cut(s)	1011
BsmAI	GTCTC	3 cut(s)	331, 783, 904
BsmI	GAATGC	1 cut(s)	632
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	2 cut(s)	135, 748
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp1407I	TGTACA	2 cut(s)	314, 525
Bsp143I	GATC	3 cut(s)	109, 165, 544
BspACI	CCGC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	676
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	1040
BspTNI	GGTCTC	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	860
BsrGI	TGTACA	2 cut(s)	314, 525
BsrI	ACTGG	1 cut(s)	981
BssAI	RCCGGY	1 cut(s)	860
BssECI	CCNNGG	2 cut(s)	280, 586
BssMI	GATC	3 cut(s)	109, 165, 544
BssT1I	CCWWGG	1 cut(s)	586
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	968, 1040
BstAUI	TGTACA	2 cut(s)	314, 525
BstDEI	CTNAG	1 cut(s)	663
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	826
BstKTI	GATC	3 cut(s)	112, 168, 547
BstMAI	GTCTC	3 cut(s)	331, 783, 904
BstMBI	GATC	3 cut(s)	109, 165, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	715, 1000, 1030
BstNSI	RCATGY	3 cut(s)	313, 778, 802
BstSCI	CCNGG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	536
BstV1I	GCAGC	3 cut(s)	410, 569, 1003
BstV2I	GAAGAC	1 cut(s)	955
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	826
BtsI	GCAGTG	1 cut(s)	646
BtsIMutI	CAGTG	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	860
Csp6I	GTAC	4 cut(s)	238, 315, 526, 682
CviAII	CATG	4 cut(s)	270, 310, 775, 799
CviQI	GTAC	4 cut(s)	238, 315, 526, 682
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	3 cut(s)	111, 167, 546
DpnII	GATC	3 cut(s)	109, 165, 544
Eam1104I	CTCTTC	2 cut(s)	968, 1040
EarI	CTCTTC	2 cut(s)	968, 1040
Eco130I	CCWWGG	1 cut(s)	586
Eco31I	GGTCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	1016
Eco88I	CYCGRG	2 cut(s)	135, 748
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	4 cut(s)	273, 313, 778, 802
FalI	AAGNNNNNCTT	3 cut(s)	603, 635, 1019
FatI	CATG	4 cut(s)	269, 309, 774, 798
FauI	CCCGC	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	399, 558, 992
FokI	GGATG	1 cut(s)	833
Fsp4HI	GCNGC	3 cut(s)	399, 558, 992
FspBI	CTAG	4 cut(s)	6, 300, 756, 765
GluI	GCNGC	3 cut(s)	399, 558, 992
HapII	CCGG	2 cut(s)	102, 861
Hin1II	CATG	4 cut(s)	273, 313, 778, 802
HinfI	GANTC	3 cut(s)	207, 293, 482
HpaII	CCGG	2 cut(s)	102, 861
HphI	GGTGA	5 cut(s)	116, 242, 296, 743, 850
Hpy166II	GTNNAC	3 cut(s)	315, 526, 826
Hpy188I	TCNGA	4 cut(s)	487, 544, 666, 690
Hpy188III	TCNNGA	1 cut(s)	748
Hpy8I	GTNNAC	3 cut(s)	315, 526, 826
HpyAV	CCTTC	2 cut(s)	685, 892
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	7 cut(s)	127, 429, 458, 557, 608, 646, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	715, 1000, 1030
HpyF3I	CTNAG	1 cut(s)	663
Hsp92II	CATG	4 cut(s)	273, 313, 778, 802
Kzo9I	GATC	3 cut(s)	109, 165, 544
LguI	GCTCTTC	1 cut(s)	1040
LmnI	GCTCC	3 cut(s)	20, 103, 472
LpnPI	CCDG	7 cut(s)	12, 31, 87, 115, 874, 994, 997
Lsp1109I	GCAGC	3 cut(s)	410, 569, 1003
LweI	GCATC	5 cut(s)	85, 136, 438, 970, 990
MaeI	CTAG	4 cut(s)	6, 300, 756, 765
MaeIII	GTNAC	3 cut(s)	230, 302, 770
MalI	GATC	3 cut(s)	111, 167, 546
MboI	GATC	3 cut(s)	109, 165, 544
MboII	GAAGA	7 cut(s)	258, 424, 491, 960, 985, 1009, 1027
MfeI	CAATTG	2 cut(s)	194, 569
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	5 cut(s)	194, 220, 519, 569, 887
Mph1103I	ATGCAT	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	882
MseI	TTAA	2 cut(s)	722, 1045
MspA1I	CMGCKG	2 cut(s)	401, 994
MspI	CCGG	2 cut(s)	102, 861
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	2 cut(s)	194, 569
Mva1269I	GAATGC	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	715, 1000, 1030
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	109, 165, 544
NlaIII	CATG	4 cut(s)	273, 313, 778, 802
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	3 cut(s)	313, 778, 802
PaeR7I	CTCGAG	2 cut(s)	135, 748
PciI	ACATGT	2 cut(s)	309, 774
PciSI	GCTCTTC	1 cut(s)	1040
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	882
PfeI	GAWTC	3 cut(s)	207, 293, 482
PflFI	GACNNNGTC	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	400, 559, 993
PscI	ACATGT	2 cut(s)	309, 774
PsiI	TTATAA	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	165
PsyI	GACNNNGTC	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	994
RsaI	GTAC	4 cut(s)	239, 316, 527, 683
RsaNI	GTAC	4 cut(s)	238, 315, 526, 682
SapI	GCTCTTC	1 cut(s)	1040
SaqAI	TTAA	2 cut(s)	722, 1045
SatI	GCNGC	3 cut(s)	399, 558, 992
Sau3AI	GATC	3 cut(s)	109, 165, 544
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	536
SfaNI	GCATC	5 cut(s)	85, 136, 438, 970, 990
Sfr274I	CTCGAG	2 cut(s)	135, 748
SlaI	CTCGAG	2 cut(s)	135, 748
SmlI	CTYRAG	4 cut(s)	135, 242, 501, 748
SmoI	CTYRAG	4 cut(s)	135, 242, 501, 748
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	5 cut(s)	194, 220, 519, 569, 887
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	4 cut(s)	6, 300, 756, 765
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	5 cut(s)	112, 136, 378, 624, 749
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	5 cut(s)	194, 220, 519, 569, 887
TatI	WGTACW	3 cut(s)	314, 525, 681
TfiI	GAWTC	3 cut(s)	207, 293, 482
Tru1I	TTAA	2 cut(s)	722, 1045
Tru9I	TTAA	2 cut(s)	722, 1045
TscAI	CASTG	1 cut(s)	653
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	3 cut(s)	398, 557, 991
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	6 cut(s)	84, 258, 306, 782, 882, 986
TspGWI	ACGGA	3 cut(s)	200, 269, 967
TspRI	CASTG	1 cut(s)	653
Tth111I	GACNNNGTC	1 cut(s)	323
XceI	RCATGY	3 cut(s)	313, 778, 802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XhoI	CTCGAG	2 cut(s)	135, 748
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	4 cut(s)	6, 300, 756, 765
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.