Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000871.1

Orthogroup ID

OG0004846

Physical Location & Seq

Genomic Coordinates Forward (+)

68389 .. 70916

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000871.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgggaaagttttacttcaccaacgaacaatcttttgccttatcagccactaacaaggaacaccaagagctcgtatcttctaaaagcctcaccaactcctcctccgacttctacaagctctttttcgataatgacaacacccttcggcttctctacgatggccccgaagttttgagtatttactggcctgacccttggcttctaattgttaccaagctgagaggtcctcgtacatgcaacaacggtagaatcgcaatgttaggcttccaccacaaatatgactgggctaatcaattttacaattgttatcccaagtccgaattgagaaatggattccgttcgcctaattttgatggtgactcgtacctcaagctacccaaatccacacttttgtcatatgatgtccatggtgataatgaatccactaataacaacatgtgtacagacaaggccacacgaggtttcaaagaagaaattggtagaggaggaggaggaattgtgtacaagggcacattgtccgatcaacgagttgcggcaatcaagcaattgaatgttgctaaccaaggagaagcagacttccttgcagaagtgagccttatcagtaagctataccacatgaacttgatagatatgtggggctattgcatagaagacaagcacaggcttgaatacatggagcatggttccttggcaaaaaatttgtcttccaatgtcaatgtgctagattggaacaaaaggtttgaaattgctgttggtacagcaaaagggctagcttacttgcatgaacaatgcttggaatgggtcttgcactgcgatataaagcctcacaaggttctcttggactctgaggctccgactagaggaactagaggttacatggctccagagtgggttcataacatgcccatcacttcaaaagtggatgtttatagctatgggattgttgtcttggaaatgctcaccggcaagatgataacagaaagtgttcaattttcattagaaagaggaggggagacacagaaaaagttgcttgtttcatgggttaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

349

Amino Acids

39.8

Weight (kDa)

6.6

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004846)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33830 FvH4_2g33840 FvH4_2g33850
malus_domestica	MD15G1076500.v1.1
prunus_persica	Prupe.1G429800_v2.0.a1 Prupe.1G429900_v2.0.a1
pyrus_communis	pycom08g07440
rosa_chinensis	RchiOBHm_Chr6g0308701 RchiOBHm_Chr6g0308721
rosa_laevigata	RLG00000010627 RLG00000010628
rosa_multiflora	Rmu_co8093658.1_g000001 Rmu_sc0000871.1_g000016 Rmu_sc0000871.1_g000018 Rmu_sc0017014.1_g000001 Rmu_sc0017015.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160000 Rroxscaffold_7G00160010
rosa_rugosa	Rorug06G0367800
rosa_samantha	Rh6AG478400 Rh6AG478800 Rh6BG488300 Rh6BG488400 Rh6CG492900 Rh6CG493200 Rh6CG493400 Rh6CG493600 Rh6CG493700 Rh6DG479200 Rh6DG479300
rosa_wichuraiana	Rw6G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	533
AcsI	RAATTY	1 cut(s)	697
AfaI	GTAC	5 cut(s)	232, 365, 442, 503, 757
AfiI	CCNNNNNNNGG	1 cut(s)	860
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	6 cut(s)	466, 550, 668, 743, 915, 989
AjuI	GAANNNNNNNTTGG	2 cut(s)	735, 767
AluBI	AGCT	7 cut(s)	70, 118, 217, 373, 607, 773, 933
AluI	AGCT	7 cut(s)	70, 118, 217, 373, 607, 773, 933
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	1007
AoxI	GGCC	3 cut(s)	160, 185, 450
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
Asp700I	GAANNNNTTC	1 cut(s)	984
AspS9I	GGNCC	2 cut(s)	161, 224
AsuHPI	GGTGA	5 cut(s)	10, 82, 368, 422, 952
AsuNHI	GCTAGC	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	657, 696
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	3 cut(s)	152, 347, 914
BcoDI	GTCTC	1 cut(s)	1007
BfaI	CTAG	4 cut(s)	722, 770, 858, 867
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	161, 224
BmiI	GGNNCC	4 cut(s)	163, 685, 852, 882
BmrI	ACTGGG	1 cut(s)	292
BmtI	GCTAGC	1 cut(s)	773
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	2 cut(s)	657, 696
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
BpmI	CTGGAG	1 cut(s)	867
BpuEI	CTTGAG	1 cut(s)	353
BsaJI	CCNNGG	4 cut(s)	194, 406, 562, 687
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse118I	RCCGGY	1 cut(s)	962
Bse1I	ACTGG	2 cut(s)	188, 287
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	194, 406, 562, 687
BseGI	GGATG	1 cut(s)	928
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	209, 837
BseNI	ACTGG	2 cut(s)	188, 287
BseRI	GAGGAG	6 cut(s)	88, 91, 498, 501, 504, 1020
BseSI	GKGCMC	1 cut(s)	512
BshFI	GGCC	3 cut(s)	162, 187, 452
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	963
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmAI	GTCTC	1 cut(s)	1007
BsnI	GGCC	3 cut(s)	162, 187, 452
Bsp1286I	GDGCHC	2 cut(s)	72, 512
Bsp1407I	TGTACA	2 cut(s)	440, 501
Bsp143I	GATC	1 cut(s)	520
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	3 cut(s)	162, 187, 452
BspCNI	CTCAG	2 cut(s)	210, 838
BspLI	GGNNCC	4 cut(s)	163, 685, 852, 882
BspOI	GCTAGC	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	962
BsrGI	TGTACA	2 cut(s)	440, 501
BsrI	ACTGG	2 cut(s)	188, 287
BssAI	RCCGGY	1 cut(s)	962
BssECI	CCNNGG	4 cut(s)	194, 406, 562, 687
BssMI	GATC	1 cut(s)	520
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	4 cut(s)	194, 406, 562, 687
Bst2BI	CACGAG	1 cut(s)	456
Bst4CI	ACNGT	1 cut(s)	245
BstAUI	TGTACA	2 cut(s)	440, 501
BstC8I	GCNNGC	1 cut(s)	771
BstDEI	CTNAG	2 cut(s)	218, 846
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	928
BstKTI	GATC	1 cut(s)	523
BstMAI	GTCTC	1 cut(s)	1007
BstMBI	GATC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNSI	RCATGY	3 cut(s)	237, 439, 904
BstSLI	GKGCMC	1 cut(s)	512
BstV2I	GAAGAC	2 cut(s)	657, 696
BsuRI	GGCC	3 cut(s)	162, 187, 452
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	928
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	1 cut(s)	808
Cac8I	GCNNGC	1 cut(s)	771
Cfr10I	RCCGGY	1 cut(s)	962
Cfr13I	GGNCC	2 cut(s)	161, 224
Csp6I	GTAC	5 cut(s)	231, 364, 441, 502, 756
CviQI	GTAC	5 cut(s)	231, 364, 441, 502, 756
DdeI	CTNAG	2 cut(s)	218, 846
DpnI	GATC	1 cut(s)	522
DpnII	GATC	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	4 cut(s)	194, 406, 562, 687
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	224
EcoT14I	CCWWGG	4 cut(s)	194, 406, 562, 687
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	4 cut(s)	194, 406, 562, 687
FalI	AAGNNNNNCTT	5 cut(s)	31, 579, 611, 821, 853
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	1 cut(s)	935
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	4 cut(s)	722, 770, 858, 867
GluI	GCNGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	867
HaeIII	GGCC	3 cut(s)	162, 187, 452
HapII	CCGG	1 cut(s)	963
HinfI	GANTC	5 cut(s)	249, 333, 359, 419, 842
HpaII	CCGG	1 cut(s)	963
HphI	GGTGA	5 cut(s)	10, 82, 368, 422, 952
Hpy166II	GTNNAC	2 cut(s)	441, 502
Hpy188I	TCNGA	5 cut(s)	106, 319, 520, 847, 855
Hpy188III	TCNNGA	1 cut(s)	884
Hpy8I	GTNNAC	2 cut(s)	441, 502
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	5 cut(s)	237, 584, 645, 781, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	218, 846
Kzo9I	GATC	1 cut(s)	520
LmnI	GCTCC	3 cut(s)	676, 856, 886
LpnPI	CCDG	6 cut(s)	169, 201, 268, 646, 897, 976
MaeI	CTAG	4 cut(s)	722, 770, 858, 867
MaeIII	GTNAC	3 cut(s)	208, 356, 872
MalI	GATC	1 cut(s)	522
MboI	GATC	1 cut(s)	520
MboII	GAAGA	4 cut(s)	69, 482, 662, 696
MfeI	CAATTG	2 cut(s)	301, 545
MhlI	GDGCHC	2 cut(s)	72, 512
MlyI	GAGTC	2 cut(s)	353, 836
MmeI	TCCRAC	2 cut(s)	129, 878
MroXI	GAANNNNTTC	1 cut(s)	984
MseI	TTAA	1 cut(s)	1044
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	1 cut(s)	963
MunI	CAATTG	2 cut(s)	301, 545
MwoI	GCNNNNNNNGC	1 cut(s)	44
NcoI	CCATGG	1 cut(s)	406
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	520
NheI	GCTAGC	1 cut(s)	769
NlaIV	GGNNCC	4 cut(s)	163, 685, 852, 882
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	3 cut(s)	237, 439, 904
PciI	ACATGT	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	3 cut(s)	249, 333, 419
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	2 cut(s)	353, 836
PpsI	GAGTC	2 cut(s)	353, 836
PpuMI	RGGWCCY	1 cut(s)	224
PscI	ACATGT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	224
PspN4I	GGNNCC	4 cut(s)	163, 685, 852, 882
PspPI	GGNCC	2 cut(s)	161, 224
PspPPI	RGGWCCY	1 cut(s)	224
RsaI	GTAC	5 cut(s)	232, 365, 442, 503, 757
RsaNI	GTAC	5 cut(s)	231, 364, 441, 502, 756
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	1044
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	1 cut(s)	520
Sau96I	GGNCC	2 cut(s)	161, 224
SchI	GAGTC	2 cut(s)	353, 836
SduI	GDGCHC	2 cut(s)	72, 512
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	4 cut(s)	722, 770, 858, 867
SstI	GAGCTC	1 cut(s)	72
StyI	CCWWGG	4 cut(s)	194, 406, 562, 687
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	126
TatI	WGTACW	2 cut(s)	440, 501
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	3 cut(s)	249, 333, 419
Tru1I	TTAA	1 cut(s)	1044
Tru9I	TTAA	1 cut(s)	1044
TscAI	CASTG	1 cut(s)	815
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	6 cut(s)	432, 632, 798, 884, 984, 1026
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	3 cut(s)	237, 439, 904
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	4 cut(s)	722, 770, 858, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.