Rh6CG493200

receptor protein kinase ZmPK1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004846
Physical Location & Seq
Forward (+)
65931361 .. 65937516
6156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG493200.1

Sequence Viewer

Length: 708 bp
ATGGGAAAGCTTTGCTTCACCAACGAACACTCTTTTGCCTTATCAGCCACTAACAAGGAACACCAAGAGCTCGTATCTTCTAGAAGCCTCACCAACTCCTCCTCCGGCTTCTACAAGCTCTTTTTCGATAATGACAACACCCTCCGGCCTCTCTACGATGGCCCCGAAGTTTTGAGTATTTACTGGCCTGACCCTTGGCTTCTAATTAGTTACCGAGCTGAGAGGTCCTCGTACAACAACAGTAGAATCGCAATTTTCGATGCATTAGGGCACCTCAGTGCATCCGATGACTTTACCGTTTTGTCCTCGGATTACGGTGCCAAGGTGCAGAGAATTGTGAAGGTGGATGTGGATGGTAACGTCCGAATGTACAGTCGAAAGAAGCCTGGAGAGACCTGGGGTGTTACGTGGCAAGCCATTTCGCAACCATGCAAAATTCATGGGCTCTGTGGAGCCAATAGTTGGTGTACCTATAATCCTAGTATGGGTAGGAAATGCTCCTGCCTACCGGGATATAAGGTGGTAAATAAAGATGATTGGTCTTATGGGTGTGAACCAGATTTCAATCGGTCTTGTGATGCTCCCGGTGATGATCGAGTTGGGTTTATGCATCTCCCTCGAGTTGAAATAACAACTACACTTGCTGAGCCAAATTTAGCAGCAAAGCCCAACGAGCATTTTCACATCTGTAGGATCAATCATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

235

Amino Acids

26.47

Weight (kDa)

6.69

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 108 - 174 4.1e-08 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 270, 317
AccB7I CCANNNNNTGG 1 cut(s) 462
AclWI GGATC 1 cut(s) 701
AcsI RAATTY 2 cut(s) 435, 652
AfaI GTAC 3 cut(s) 233, 371, 469
AfiI CCNNNNNNNGG 2 cut(s) 462, 485
AgsI TTSAA 2 cut(s) 565, 626
AjnI CCWGG 2 cut(s) 385, 395
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 4 cut(s) 10, 70, 118, 218
AluI AGCT 4 cut(s) 10, 70, 118, 218
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 618
AoxI GGCC 3 cut(s) 146, 160, 185
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 2 cut(s) 435, 652
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AspS9I GGNCC 2 cut(s) 161, 225
AsuC2I CCSGG 2 cut(s) 510, 585
AsuHPI GGTGA 3 cut(s) 10, 82, 599
AvaI CYCGRG 1 cut(s) 618
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 273
BanI GGYRCC 2 cut(s) 270, 317
BanII GRGCYC 2 cut(s) 72, 447
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 671
BccI CCATC 2 cut(s) 152, 347
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 2 cut(s) 387, 397
BcnI CCSGG 2 cut(s) 510, 585
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 2 cut(s) 81, 480
BfmI CTRYAG 1 cut(s) 688
BisI GCNGC 1 cut(s) 660
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 1 cut(s) 661
Bme1390I CCNGG 4 cut(s) 387, 397, 510, 585
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 618
BmgT120I GGNCC 2 cut(s) 161, 225
BmiI GGNNCC 4 cut(s) 163, 272, 319, 454
BmrFI CCNGG 4 cut(s) 387, 397, 510, 585
BmsI GCATC 4 cut(s) 250, 290, 568, 619
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 645
BpuMI CCSGG 2 cut(s) 510, 585
BsaAI YACGTR 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 4 cut(s) 194, 306, 321, 396
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 485
Bse1I ACTGG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 2 cut(s) 387, 397
BseDI CCNNGG 4 cut(s) 194, 306, 321, 396
BseGI GGATG 3 cut(s) 281, 352, 358
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 2 cut(s) 462, 485
BseMII CTCAG 3 cut(s) 210, 289, 636
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 2 cut(s) 88, 91
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 671
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 3 cut(s) 148, 162, 187
BshNI GGYRCC 2 cut(s) 270, 317
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 4 cut(s) 105, 145, 509, 585
BslI CCNNNNNNNGG 2 cut(s) 462, 485
BsmAI GTCTC 1 cut(s) 386
BsnI GGCC 3 cut(s) 148, 162, 187
Bso31I GGTCTC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 618
Bsp1286I GDGCHC 3 cut(s) 72, 273, 447
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 592, 693
Bsp1720I GCTNAGC 1 cut(s) 645
BspANI GGCC 3 cut(s) 148, 162, 187
BspCNI CTCAG 3 cut(s) 211, 288, 637
BspLI GGNNCC 4 cut(s) 163, 272, 319, 454
BspPI GGATC 1 cut(s) 701
BspT107I GGYRCC 2 cut(s) 270, 317
BspTNI GGTCTC 1 cut(s) 386
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 194, 306, 321, 396
BssMI GATC 2 cut(s) 592, 693
BssT1I CCWWGG 2 cut(s) 194, 321
Bst2UI CCWGG 2 cut(s) 387, 397
Bst4CI ACNGT 4 cut(s) 242, 298, 317, 374
BstAUI TGTACA 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 3 cut(s) 219, 275, 645
BstF5I GGATG 3 cut(s) 281, 352, 358
BstKTI GATC 2 cut(s) 595, 696
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 2 cut(s) 592, 693
BstMWI GCNNNNNNNGC 2 cut(s) 44, 673
BstNI CCWGG 2 cut(s) 387, 397
BstSCI CCNGG 4 cut(s) 385, 395, 508, 583
BstSFI CTRYAG 1 cut(s) 688
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 671
BsuRI GGCC 3 cut(s) 148, 162, 187
BtsCI GGATG 3 cut(s) 281, 352, 358
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 414
Cfr13I GGNCC 2 cut(s) 161, 225
Csp6I GTAC 3 cut(s) 232, 370, 468
CviAII CATG 3 cut(s) 429, 440, 701
CviQI GTAC 3 cut(s) 232, 370, 468
DdeI CTNAG 3 cut(s) 219, 275, 645
DpnI GATC 2 cut(s) 594, 695
DpnII GATC 2 cut(s) 592, 693
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 194, 321
Eco24I GRGCYC 2 cut(s) 72, 447
Eco31I GGTCTC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 618
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 385, 395
EcoT14I CCWWGG 2 cut(s) 194, 321
EcoT22I ATGCAT 2 cut(s) 265, 612
EcoT38I GRGCYC 2 cut(s) 72, 447
ErhI CCWWGG 2 cut(s) 194, 321
FaeI CATG 3 cut(s) 432, 443, 704
FaiI YATR 8 cut(s) 430, 441, 474, 485, 516, 546, 608, 702
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 3 cut(s) 428, 439, 700
Fnu4HI GCNGC 1 cut(s) 660
FokI GGATG 3 cut(s) 268, 359, 365
FriOI GRGCYC 2 cut(s) 72, 447
Fsp4HI GCNGC 1 cut(s) 660
FspBI CTAG 2 cut(s) 81, 480
GluI GCNGC 1 cut(s) 660
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 3 cut(s) 148, 162, 187
HapII CCGG 4 cut(s) 105, 145, 509, 585
Hin1II CATG 3 cut(s) 432, 443, 704
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 246
HpaII CCGG 4 cut(s) 105, 145, 509, 585
HphI GGTGA 3 cut(s) 10, 82, 599
Hpy166II GTNNAC 2 cut(s) 468, 554
Hpy188I TCNGA 3 cut(s) 286, 310, 365
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 468, 554
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 4 cut(s) 242, 298, 317, 374
HpyCH4IV ACGT 2 cut(s) 360, 407
HpyCH4V TGCA 5 cut(s) 263, 281, 328, 432, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 673
HpyF3I CTNAG 3 cut(s) 219, 275, 645
HpySE526I ACGT 2 cut(s) 360, 407
Hsp92II CATG 3 cut(s) 432, 443, 704
Kzo9I GATC 2 cut(s) 592, 693
LmnI GCTCC 3 cut(s) 452, 503, 586
Lsp1109I GCAGC 1 cut(s) 671
LweI GCATC 4 cut(s) 250, 290, 568, 619
MaeI CTAG 2 cut(s) 81, 480
MaeII ACGT 2 cut(s) 360, 407
MaeIII GTNAC 3 cut(s) 209, 356, 403
MalI GATC 2 cut(s) 594, 695
MboI GATC 2 cut(s) 592, 693
MboII GAAGA 1 cut(s) 69
MhlI GDGCHC 3 cut(s) 72, 273, 447
MluCI AATT 5 cut(s) 204, 252, 333, 435, 652
Mph1103I ATGCAT 2 cut(s) 265, 612
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 4 cut(s) 105, 145, 509, 585
MspR9I CCNGG 4 cut(s) 387, 397, 510, 585
MvaI CCWGG 2 cut(s) 387, 397
MwoI GCNNNNNNNGC 2 cut(s) 44, 673
NciI CCSGG 2 cut(s) 510, 585
NdeII GATC 2 cut(s) 592, 693
NlaIII CATG 3 cut(s) 432, 443, 704
NlaIV GGNNCC 4 cut(s) 163, 272, 319, 454
NsiI ATGCAT 2 cut(s) 265, 612
OliI CACNNNNGTG 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 618
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 255
PfeI GAWTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 462
PkrI GCNGC 1 cut(s) 661
Ppu21I YACGTR 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 385, 395
PspGI CCWGG 2 cut(s) 385, 395
PspN4I GGNNCC 4 cut(s) 163, 272, 319, 454
PspPI GGNCC 2 cut(s) 161, 225
PspPPI RGGWCCY 1 cut(s) 225
PspXI VCTCGAGB 1 cut(s) 618
RsaI GTAC 3 cut(s) 233, 371, 469
RsaNI GTAC 3 cut(s) 232, 370, 468
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 72
SatI GCNGC 1 cut(s) 660
Sau3AI GATC 2 cut(s) 592, 693
Sau96I GGNCC 2 cut(s) 161, 225
ScrFI CCNGG 4 cut(s) 387, 397, 510, 585
SduI GDGCHC 3 cut(s) 72, 273, 447
SfaNI GCATC 4 cut(s) 250, 290, 568, 619
SfcI CTRYAG 1 cut(s) 688
Sfr274I CTCGAG 1 cut(s) 618
SinI GGWCC 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 618
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 618
SmoI CTYRAG 1 cut(s) 618
Sse9I AATT 5 cut(s) 204, 252, 333, 435, 652
SspMI CTAG 2 cut(s) 81, 480
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 4 cut(s) 385, 395, 508, 583
StyI CCWWGG 2 cut(s) 194, 321
TaaI ACNGT 4 cut(s) 242, 298, 317, 374
TaiI ACGT 2 cut(s) 363, 410
TaqI TCGA 5 cut(s) 126, 258, 376, 595, 619
TaqII GACCGA 1 cut(s) 558
TasI AATT 5 cut(s) 204, 252, 333, 435, 652
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 1 cut(s) 246
TscAI CASTG 1 cut(s) 283
TseI GCWGC 1 cut(s) 659
TspDTI ATGAA 1 cut(s) 428
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 462
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 2 cut(s) 435, 652
XbaI TCTAGA 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 618
XspI CTAG 2 cut(s) 81, 480
Zsp2I ATGCAT 2 cut(s) 265, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.