Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8093658.1

Orthogroup ID

OG0004846

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 595

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8093658.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccggcaatcttgttctgctcgctgcgcacggcggcggcgtattgtgggaaagctttgcttcgccgacggacacacttttgcctcagcaagcgctcactagaaacacacagctcatttcttcaagaagcctcaccaactattcctccggcttctactctttttacttcgacaacgacaacactcttcgtatgctctacaacggccccgaggtttcgagcatttactggcctgatccatggcttctgagttggcaagtaggaagatccacatacaacaacagtcgaattgcaacttttgacagcttgggaaattttagtgcatctgataattttatcgtttggacaatcgactacggtgcaaatttgcagcgaatattcaggatggatgtagatggtaatctcagaggttacagtcgaaaaggtcctggagataaatggattgttacatgggaggcagttttacaaccttgtaaaattcatggcatatgcggagctaatagctattgcagctatattcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

198

Amino Acids

22.26

Weight (kDa)

6.38

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004846)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33830 FvH4_2g33840 FvH4_2g33850
malus_domestica	MD15G1076500.v1.1
prunus_persica	Prupe.1G429800_v2.0.a1 Prupe.1G429900_v2.0.a1
pyrus_communis	pycom08g07440
rosa_chinensis	RchiOBHm_Chr6g0308701 RchiOBHm_Chr6g0308721
rosa_laevigata	RLG00000010627 RLG00000010628
rosa_multiflora	Rmu_co8093658.1_g000001 Rmu_sc0000871.1_g000016 Rmu_sc0000871.1_g000018 Rmu_sc0017014.1_g000001 Rmu_sc0017015.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160000 Rroxscaffold_7G00160010
rosa_rugosa	Rorug06G0367800
rosa_samantha	Rh6AG478400 Rh6AG478800 Rh6BG488300 Rh6BG488400 Rh6CG492900 Rh6CG493200 Rh6CG493400 Rh6CG493600 Rh6CG493700 Rh6DG479200 Rh6DG479300
rosa_wichuraiana	Rw6G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	103
AciI	CCGC	3 cut(s)	109, 112, 565
AclWI	GGATC	2 cut(s)	303, 334
AcsI	RAATTY	3 cut(s)	386, 437, 550
AdeI	CACNNNGTG	1 cut(s)	25
AfeI	AGCGCT	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	46, 199
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	7 cut(s)	42, 130, 188, 379, 570, 577, 586
AluI	AGCT	7 cut(s)	42, 130, 188, 379, 570, 577, 586
AlwI	GGATC	2 cut(s)	303, 334
Ama87I	CYCGRG	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	169
AoxI	GGCC	3 cut(s)	55, 278, 303
ApeKI	GCWGC	3 cut(s)	99, 443, 583
ApoI	RAATTY	3 cut(s)	386, 437, 550
AspLEI	GCGC	2 cut(s)	104, 170
AspS9I	GGNCC	4 cut(s)	28, 56, 279, 498
AsuHPI	GGTGA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	2 cut(s)	28, 498
BbvCI	CCTCAGC	1 cut(s)	160
BbvI	GCAGC	2 cut(s)	86, 455
BccI	CCATC	2 cut(s)	452, 462
BceAI	ACGGC	2 cut(s)	122, 293
BcgI	CGANNNNNNTGC	2 cut(s)	414, 448
BciT130I	CCWGG	1 cut(s)	502
BfaI	CTAG	1 cut(s)	175
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	5 cut(s)	100, 110, 113, 444, 584
BlsI	GCNGC	5 cut(s)	101, 111, 114, 445, 585
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	2 cut(s)	28, 498
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	4 cut(s)	28, 56, 279, 498
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	523
Bpu10I	CCTNAGC	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	472
BsaJI	CCNNGG	2 cut(s)	283, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	283, 312
BseGI	GGATG	2 cut(s)	463, 467
BseJI	GATNNNNATC	1 cut(s)	472
BseMII	CTCAG	3 cut(s)	174, 312, 491
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	86, 455
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	57, 280, 305
BsiEI	CGRYCG	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	79, 223
BsnI	GGCC	3 cut(s)	57, 280, 305
BsoBI	CYCGRG	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	308, 339
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	3 cut(s)	109, 112, 565
BspANI	GGCC	3 cut(s)	57, 280, 305
BspCNI	CTCAG	3 cut(s)	173, 313, 490
BspLI	GGNNCC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	303, 334
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	283, 312
BssMI	GATC	2 cut(s)	308, 339
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	4 cut(s)	23, 357, 432, 489
Bst6I	CTCTTC	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	97, 166
BstDEI	CTNAG	4 cut(s)	69, 160, 321, 477
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	463, 467
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	104, 170
BstKTI	GATC	2 cut(s)	311, 342
BstMBI	GATC	2 cut(s)	308, 339
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 583
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstV1I	GCAGC	2 cut(s)	86, 455
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	57, 280, 305
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	463, 467
Cac8I	GCNNGC	2 cut(s)	97, 166
CfoI	GCGC	2 cut(s)	104, 170
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	4 cut(s)	28, 56, 279, 498
CviAII	CATG	3 cut(s)	313, 523, 555
DdeI	CTNAG	4 cut(s)	69, 160, 321, 477
DpnI	GATC	2 cut(s)	310, 341
DpnII	GATC	2 cut(s)	308, 339
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	28, 498
Eco47III	AGCGCT	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	316, 526, 558
FaiI	YATR	8 cut(s)	267, 314, 347, 524, 556, 561, 563, 589
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	3 cut(s)	312, 522, 554
FauNDI	CATATG	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	100, 110, 113, 444, 584
FokI	GGATG	2 cut(s)	470, 474
Fsp4HI	GCNGC	5 cut(s)	100, 110, 113, 444, 584
FspBI	CTAG	1 cut(s)	175
FspI	TGCGCA	1 cut(s)	103
GlaI	GCGC	2 cut(s)	103, 169
GluI	GCNGC	5 cut(s)	100, 110, 113, 444, 584
GsuI	CTGGAG	1 cut(s)	523
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	57, 280, 305
HapII	CCGG	2 cut(s)	79, 223
HhaI	GCGC	2 cut(s)	104, 170
Hin1II	CATG	3 cut(s)	316, 526, 558
Hin6I	GCGC	2 cut(s)	102, 168
HinP1I	GCGC	2 cut(s)	102, 168
HindIII	AAGCTT	1 cut(s)	128
HpaII	CCGG	2 cut(s)	79, 223
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	5, 322, 401, 480
Hpy188III	TCNNGA	2 cut(s)	199, 455
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4III	ACNGT	4 cut(s)	23, 357, 432, 489
HpyCH4V	TGCA	6 cut(s)	65, 366, 396, 435, 443, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 583
HpyF3I	CTNAG	4 cut(s)	69, 160, 321, 477
Hsp92II	CATG	3 cut(s)	316, 526, 558
HspAI	GCGC	2 cut(s)	102, 168
Kzo9I	GATC	2 cut(s)	308, 339
LmnI	GCTCC	1 cut(s)	567
LpnPI	CCDG	7 cut(s)	92, 236, 287, 319, 440, 487, 514
Lsp1109I	GCAGC	2 cut(s)	86, 455
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	483, 518
MalI	GATC	2 cut(s)	310, 341
MboI	GATC	2 cut(s)	308, 339
MboII	GAAGA	3 cut(s)	187, 252, 349
MflI	RGATCY	1 cut(s)	339
MluCI	AATT	5 cut(s)	361, 386, 404, 437, 550
MmeI	TCCRAC	2 cut(s)	28, 58
MnlI	CCTC	7 cut(s)	41, 169, 216, 230, 278, 474, 521
MspI	CCGG	2 cut(s)	79, 223
MspR9I	CCNGG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	101, 583
NcoI	CCATGG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	2 cut(s)	308, 339
NlaIII	CATG	3 cut(s)	316, 526, 558
NlaIV	GGNNCC	1 cut(s)	281
NsbI	TGCGCA	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	101, 111, 114, 445, 585
PpuMI	RGGWCCY	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	4 cut(s)	28, 56, 279, 498
PspPPI	RGGWCCY	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	339
SatI	GCNGC	5 cut(s)	100, 110, 113, 444, 584
Sau3AI	GATC	2 cut(s)	308, 339
Sau96I	GGNCC	4 cut(s)	28, 56, 279, 498
ScrFI	CCNGG	1 cut(s)	502
SfaNI	GCATC	1 cut(s)	405
SinI	GGWCC	2 cut(s)	28, 498
Sse9I	AATT	5 cut(s)	361, 386, 404, 437, 550
SsiI	CCGC	3 cut(s)	109, 112, 565
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	4 cut(s)	23, 357, 432, 489
TaqI	TCGA	6 cut(s)	10, 244, 291, 359, 424, 491
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	5 cut(s)	361, 386, 404, 437, 550
TauI	GCSGC	2 cut(s)	112, 115
TseI	GCWGC	3 cut(s)	99, 443, 583
TspDTI	ATGAA	1 cut(s)	543
TspGWI	ACGGA	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	28, 498
XapI	RAATTY	3 cut(s)	386, 437, 550
XspI	CTAG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.