Ion channel
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 472 |
| AccBSI | CCGCTC | 1 cut(s) | 139 |
| AccI | GTMKAC | 1 cut(s) | 509 |
| AccII | CGCG | 8 cut(s) | 107, 279, 327, 368, 392, 397, 1478, 2565 |
| AccIII | TCCGGA | 1 cut(s) | 1849 |
| AclWI | GGATC | 5 cut(s) | 410, 842, 1488, 2392, 2405 |
| AcoI | YGGCCR | 3 cut(s) | 191, 515, 1410 |
| AcsI | RAATTY | 2 cut(s) | 1355, 2445 |
| AcuI | CTGAAG | 6 cut(s) | 1026, 1359, 1439, 2403, 2565, 2607 |
| AcvI | CACGTG | 2 cut(s) | 1445, 1496 |
| AcyI | GRCGYC | 1 cut(s) | 2011 |
| AfaI | GTAC | 4 cut(s) | 594, 788, 1305, 1982 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 189, 283, 442, 816, 1423, 1525 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 25 |
| AhlI | ACTAGT | 1 cut(s) | 559 |
| AjnI | CCWGG | 3 cut(s) | 1675, 2059, 2637 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1069, 1101, 2198, 2230, 2682, 2714 |
| Alw21I | GWGCWC | 3 cut(s) | 570, 1515, 1669 |
| Alw26I | GTCTC | 8 cut(s) | 258, 827, 1096, 1311, 1432, 2213, 2339, 2479 |
| AlwI | GGATC | 5 cut(s) | 410, 842, 1488, 2392, 2405 |
| Ama87I | CYCGRG | 2 cut(s) | 130, 1985 |
| Aor13HI | TCCGGA | 1 cut(s) | 1849 |
| AoxI | GGCC | 7 cut(s) | 133, 191, 426, 515, 1073, 1410, 1742 |
| ApaI | GGGCCC | 1 cut(s) | 137 |
| ApeKI | GCWGC | 4 cut(s) | 58, 1258, 1395, 2410 |
| ApoI | RAATTY | 2 cut(s) | 1355, 2445 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 805, 837 |
| AseI | ATTAAT | 3 cut(s) | 2237, 2559, 2736 |
| AspLEI | GCGC | 4 cut(s) | 250, 370, 394, 2530 |
| AspS9I | GGNCC | 6 cut(s) | 133, 134, 433, 1073, 1207, 2769 |
| AsuC2I | CCSGG | 2 cut(s) | 131, 132 |
| AsuHPI | GGTGA | 4 cut(s) | 76, 1540, 1603, 2736 |
| AsuNHI | GCTAGC | 1 cut(s) | 1261 |
| AvaI | CYCGRG | 2 cut(s) | 130, 1985 |
| AvaII | GGWCC | 3 cut(s) | 433, 1207, 2769 |
| BaeGI | GKGCMC | 1 cut(s) | 137 |
| BamHI | GGATCC | 1 cut(s) | 2397 |
| BanI | GGYRCC | 1 cut(s) | 472 |
| BanII | GRGCYC | 5 cut(s) | 53, 114, 137, 1247, 2677 |
| BbrPI | CACGTG | 2 cut(s) | 1445, 1496 |
| BbsI | GAAGAC | 3 cut(s) | 280, 1751, 2553 |
| Bbv12I | GWGCWC | 3 cut(s) | 570, 1515, 1669 |
| BbvI | GCAGC | 4 cut(s) | 70, 1270, 1407, 2422 |
| BccI | CCATC | 8 cut(s) | 2, 31, 712, 1221, 1748, 1820, 2117, 2749 |
| BceAI | ACGGC | 1 cut(s) | 134 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2543, 2577 |
| BciT130I | CCWGG | 3 cut(s) | 1677, 2061, 2639 |
| BclI | TGATCA | 1 cut(s) | 2187 |
| BcnI | CCSGG | 2 cut(s) | 131, 132 |
| BcoDI | GTCTC | 8 cut(s) | 258, 827, 1096, 1311, 1432, 2213, 2339, 2479 |
| BcuI | ACTAGT | 1 cut(s) | 559 |
| BfaI | CTAG | 9 cut(s) | 501, 560, 1262, 2042, 2142, 2258, 2457, 2463, 2484 |
| BfmI | CTRYAG | 1 cut(s) | 1821 |
| BfoI | RGCGCY | 1 cut(s) | 2531 |
| BlpI | GCTNAGC | 1 cut(s) | 1514 |
| Bme1390I | CCNGG | 5 cut(s) | 131, 132, 1677, 2061, 2639 |
| Bme18I | GGWCC | 3 cut(s) | 433, 1207, 2769 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 25 |
| BmeT110I | CYCGRG | 2 cut(s) | 130, 1985 |
| BmgT120I | GGNCC | 6 cut(s) | 133, 134, 433, 1073, 1207, 2769 |
| BmiI | GGNNCC | 8 cut(s) | 111, 135, 435, 474, 858, 1208, 2399, 2771 |
| BmrFI | CCNGG | 5 cut(s) | 131, 132, 1677, 2061, 2639 |
| BmsI | GCATC | 8 cut(s) | 104, 168, 1077, 1119, 1138, 1472, 1480, 1783 |
| BmtI | GCTAGC | 1 cut(s) | 1265 |
| BpiI | GAAGAC | 3 cut(s) | 280, 1751, 2553 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1596, 1628 |
| BpmI | CTGGAG | 1 cut(s) | 2043 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2669 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1514 |
| BpuEI | CTTGAG | 5 cut(s) | 47, 653, 1561, 2269, 2591 |
| BpuMI | CCSGG | 2 cut(s) | 131, 132 |
| BsaAI | YACGTR | 2 cut(s) | 1445, 1496 |
| BsaHI | GRCGYC | 1 cut(s) | 2011 |
| BsaI | GGTCTC | 2 cut(s) | 1432, 2479 |
| BsaJI | CCNNGG | 3 cut(s) | 130, 429, 1076 |
| BsaWI | WCCGGW | 1 cut(s) | 1849 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 157, 187, 1284, 1314, 1903, 1933 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 189, 283, 442, 816, 1423, 1525 |
| Bse1I | ACTGG | 5 cut(s) | 187, 1413, 1755, 2136, 2520 |
| Bse3DI | GCAATG | 3 cut(s) | 19, 1131, 2541 |
| BseAI | TCCGGA | 1 cut(s) | 1849 |
| BseBI | CCWGG | 3 cut(s) | 1677, 2061, 2639 |
| BseDI | CCNNGG | 3 cut(s) | 130, 429, 1076 |
| BseGI | GGATG | 9 cut(s) | 13, 95, 1212, 1232, 1759, 1858, 1885, 2082, 2140 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 189, 283, 442, 816, 1423, 1525 |
| BseMI | GCAATG | 3 cut(s) | 19, 1131, 2541 |
| BseMII | CTCAG | 9 cut(s) | 323, 425, 441, 1443, 1528, 1713, 2490, 2662, 2683 |
| BseNI | ACTGG | 5 cut(s) | 187, 1413, 1755, 2136, 2520 |
| BseSI | GKGCMC | 1 cut(s) | 137 |
| BseX3I | CGGCCG | 1 cut(s) | 515 |
| BseXI | GCAGC | 4 cut(s) | 70, 1270, 1407, 2422 |
| BseYI | CCCAGC | 1 cut(s) | 1132 |
| BsgI | GTGCAG | 1 cut(s) | 1965 |
| Bsh1236I | CGCG | 8 cut(s) | 107, 279, 327, 368, 392, 397, 1478, 2565 |
| Bsh1285I | CGRYCG | 3 cut(s) | 205, 277, 518 |
| BshFI | GGCC | 7 cut(s) | 135, 193, 428, 517, 1075, 1412, 1744 |
| BshNI | GGYRCC | 1 cut(s) | 472 |
| BsiEI | CGRYCG | 3 cut(s) | 205, 277, 518 |
| BsiHKAI | GWGCWC | 3 cut(s) | 570, 1515, 1669 |
| BsiHKCI | CYCGRG | 2 cut(s) | 130, 1985 |
| BsiSI | CCGG | 4 cut(s) | 131, 443, 613, 1850 |
| BslFI | GGGAC | 6 cut(s) | 290, 419, 1220, 1384, 1911, 2755 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 189, 283, 442, 816, 1423, 1525 |
| BsmAI | GTCTC | 8 cut(s) | 258, 827, 1096, 1311, 1432, 2213, 2339, 2479 |
| BsmBI | CGTCTC | 1 cut(s) | 2339 |
| BsmFI | GGGAC | 6 cut(s) | 290, 419, 1220, 1384, 1911, 2755 |
| BsmI | GAATGC | 2 cut(s) | 1723, 2048 |
| BsnI | GGCC | 7 cut(s) | 135, 193, 428, 517, 1075, 1412, 1744 |
| Bso31I | GGTCTC | 2 cut(s) | 1432, 2479 |
| BsoBI | CYCGRG | 2 cut(s) | 130, 1985 |
| Bsp120I | GGGCCC | 1 cut(s) | 133 |
| Bsp1286I | GDGCHC | 8 cut(s) | 53, 114, 137, 570, 1247, 1515, 1669, 2677 |
| Bsp13I | TCCGGA | 1 cut(s) | 1849 |
| Bsp1407I | TGTACA | 1 cut(s) | 786 |
| Bsp143I | GATC | 7 cut(s) | 202, 402, 834, 1480, 2187, 2288, 2397 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1514 |
| BspANI | GGCC | 7 cut(s) | 135, 193, 428, 517, 1075, 1412, 1744 |
| BspCNI | CTCAG | 9 cut(s) | 322, 424, 442, 1442, 1527, 1714, 2489, 2661, 2682 |
| BspEI | TCCGGA | 1 cut(s) | 1849 |
| BspFNI | CGCG | 8 cut(s) | 107, 279, 327, 368, 392, 397, 1478, 2565 |
| BspLI | GGNNCC | 8 cut(s) | 111, 135, 435, 474, 858, 1208, 2399, 2771 |
| BspOI | GCTAGC | 1 cut(s) | 1265 |
| BspPI | GGATC | 5 cut(s) | 410, 842, 1488, 2392, 2405 |
| BspQI | GCTCTTC | 2 cut(s) | 146, 936 |
| BspT107I | GGYRCC | 1 cut(s) | 472 |
| BspTNI | GGTCTC | 2 cut(s) | 1432, 2479 |
| BsrBI | CCGCTC | 1 cut(s) | 139 |
| BsrDI | GCAATG | 3 cut(s) | 19, 1131, 2541 |
| BsrGI | TGTACA | 1 cut(s) | 786 |
| BsrI | ACTGG | 5 cut(s) | 187, 1413, 1755, 2136, 2520 |
| BssECI | CCNNGG | 3 cut(s) | 130, 429, 1076 |
| BssMI | GATC | 7 cut(s) | 202, 402, 834, 1480, 2187, 2288, 2397 |
| BssNI | GRCGYC | 1 cut(s) | 2011 |
| BssT1I | CCWWGG | 2 cut(s) | 429, 1076 |
| Bst2UI | CCWGG | 3 cut(s) | 1677, 2061, 2639 |
| Bst4CI | ACNGT | 8 cut(s) | 79, 711, 739, 1624, 1650, 1662, 1955, 2325 |
| Bst6I | CTCTTC | 7 cut(s) | 146, 499, 863, 936, 1181, 2307, 2583 |
| BstACI | GRCGYC | 1 cut(s) | 2011 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 980 |
| BstAUI | TGTACA | 1 cut(s) | 786 |
| BstBAI | YACGTR | 2 cut(s) | 1445, 1496 |
| BstDEI | CTNAG | 9 cut(s) | 309, 411, 450, 1429, 1514, 1722, 2476, 2648, 2669 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1421 |
| BstF5I | GGATG | 9 cut(s) | 13, 95, 1212, 1232, 1759, 1858, 1885, 2082, 2140 |
| BstFNI | CGCG | 8 cut(s) | 107, 279, 327, 368, 392, 397, 1478, 2565 |
| BstH2I | RGCGCY | 1 cut(s) | 2531 |
| BstHHI | GCGC | 4 cut(s) | 250, 370, 394, 2530 |
| BstKTI | GATC | 7 cut(s) | 205, 405, 837, 1483, 2190, 2291, 2400 |
| BstMAI | GTCTC | 8 cut(s) | 258, 827, 1096, 1311, 1432, 2213, 2339, 2479 |
| BstMBI | GATC | 7 cut(s) | 202, 402, 834, 1480, 2187, 2288, 2397 |
| BstMCI | CGRYCG | 3 cut(s) | 205, 277, 518 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 371, 497, 980, 1392, 2540 |
| BstNI | CCWGG | 3 cut(s) | 1677, 2061, 2639 |
| BstNSI | RCATGY | 2 cut(s) | 374, 1114 |
| BstSCI | CCNGG | 5 cut(s) | 129, 130, 1675, 2059, 2637 |
| BstSFI | CTRYAG | 1 cut(s) | 1821 |
| BstSLI | GKGCMC | 1 cut(s) | 137 |
| BstUI | CGCG | 8 cut(s) | 107, 279, 327, 368, 392, 397, 1478, 2565 |
| BstV1I | GCAGC | 4 cut(s) | 70, 1270, 1407, 2422 |
| BstV2I | GAAGAC | 3 cut(s) | 280, 1751, 2553 |
| BstX2I | RGATCY | 1 cut(s) | 2397 |
| BstYI | RGATCY | 1 cut(s) | 2397 |
| BstZI | CGGCCG | 1 cut(s) | 515 |
| BsuRI | GGCC | 7 cut(s) | 135, 193, 428, 517, 1075, 1412, 1744 |
| BtsCI | GGATG | 9 cut(s) | 13, 95, 1212, 1232, 1759, 1858, 1885, 2082, 2140 |
| BtsI | GCAGTG | 1 cut(s) | 1172 |
| BtsIMutI | CAGTG | 5 cut(s) | 194, 707, 1172, 1667, 2497 |
| CfoI | GCGC | 4 cut(s) | 250, 370, 394, 2530 |
| Cfr13I | GGNCC | 6 cut(s) | 133, 134, 433, 1073, 1207, 2769 |
| Cfr9I | CCCGGG | 1 cut(s) | 130 |
| CseI | GACGC | 6 cut(s) | 113, 165, 398, 2000, 2321, 2554 |
| CsiI | ACCWGGT | 1 cut(s) | 1675 |
| Csp6I | GTAC | 4 cut(s) | 593, 787, 1304, 1981 |
| CviAII | CATG | 8 cut(s) | 371, 1023, 1052, 1111, 1366, 1550, 1634, 2774 |
| CviQI | GTAC | 4 cut(s) | 593, 787, 1304, 1981 |
| DdeI | CTNAG | 9 cut(s) | 309, 411, 450, 1429, 1514, 1722, 2476, 2648, 2669 |
| DpnI | GATC | 7 cut(s) | 204, 404, 836, 1482, 2189, 2290, 2399 |
| DpnII | GATC | 7 cut(s) | 202, 402, 834, 1480, 2187, 2288, 2397 |
| DriI | GACNNNNNGTC | 1 cut(s) | 25 |
| EaeI | YGGCCR | 3 cut(s) | 191, 515, 1410 |
| EagI | CGGCCG | 1 cut(s) | 515 |
| Eam1104I | CTCTTC | 7 cut(s) | 146, 499, 863, 936, 1181, 2307, 2583 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 25 |
| EarI | CTCTTC | 7 cut(s) | 146, 499, 863, 936, 1181, 2307, 2583 |
| EciI | GGCGGA | 1 cut(s) | 544 |
| EclXI | CGGCCG | 1 cut(s) | 515 |
| Eco130I | CCWWGG | 2 cut(s) | 429, 1076 |
| Eco24I | GRGCYC | 5 cut(s) | 53, 114, 137, 1247, 2677 |
| Eco31I | GGTCTC | 2 cut(s) | 1432, 2479 |
| Eco32I | GATATC | 1 cut(s) | 2705 |
| Eco47I | GGWCC | 3 cut(s) | 433, 1207, 2769 |
| Eco52I | CGGCCG | 1 cut(s) | 515 |
| Eco57I | CTGAAG | 6 cut(s) | 1026, 1359, 1439, 2403, 2565, 2607 |
| Eco72I | CACGTG | 2 cut(s) | 1445, 1496 |
| Eco88I | CYCGRG | 2 cut(s) | 130, 1985 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1421 |
| EcoRII | CCWGG | 3 cut(s) | 1675, 2059, 2637 |
| EcoRV | GATATC | 1 cut(s) | 2705 |
| EcoT14I | CCWWGG | 2 cut(s) | 429, 1076 |
| EcoT38I | GRGCYC | 5 cut(s) | 53, 114, 137, 1247, 2677 |
| ErhI | CCWWGG | 2 cut(s) | 429, 1076 |
| Esp3I | CGTCTC | 1 cut(s) | 2339 |
| FaeI | CATG | 8 cut(s) | 374, 1026, 1055, 1114, 1369, 1553, 1637, 2777 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1826, 1858 |
| FaqI | GGGAC | 6 cut(s) | 290, 419, 1220, 1384, 1911, 2755 |
| FatI | CATG | 8 cut(s) | 370, 1022, 1051, 1110, 1365, 1549, 1633, 2773 |
| FauI | CCCGC | 5 cut(s) | 144, 154, 191, 217, 259 |
| FbaI | TGATCA | 1 cut(s) | 2187 |
| FblI | GTMKAC | 1 cut(s) | 509 |
| FokI | GGATG | 9 cut(s) | 20, 82, 1199, 1239, 1766, 1865, 1892, 2089, 2147 |
| FriOI | GRGCYC | 5 cut(s) | 53, 114, 137, 1247, 2677 |
| FspBI | CTAG | 9 cut(s) | 501, 560, 1262, 2042, 2142, 2258, 2457, 2463, 2484 |
| GlaI | GCGC | 4 cut(s) | 249, 369, 393, 2529 |
| GsaI | CCCAGC | 1 cut(s) | 1136 |
| GsuI | CTGGAG | 1 cut(s) | 2043 |
| HaeII | RGCGCY | 1 cut(s) | 2531 |
| HaeIII | GGCC | 7 cut(s) | 135, 193, 428, 517, 1075, 1412, 1744 |
| HapII | CCGG | 4 cut(s) | 131, 443, 613, 1850 |
| HgaI | GACGC | 6 cut(s) | 113, 165, 398, 2000, 2321, 2554 |
| HhaI | GCGC | 4 cut(s) | 250, 370, 394, 2530 |
| Hin1I | GRCGYC | 1 cut(s) | 2011 |
| Hin1II | CATG | 8 cut(s) | 374, 1026, 1055, 1114, 1369, 1553, 1637, 2777 |
| Hin6I | GCGC | 4 cut(s) | 248, 368, 392, 2528 |
| HinP1I | GCGC | 4 cut(s) | 248, 368, 392, 2528 |
| HincII | GTYRAC | 1 cut(s) | 510 |
| HindII | GTYRAC | 1 cut(s) | 510 |
| HindIII | AAGCTT | 4 cut(s) | 1349, 1595, 2159, 2415 |
| HpaII | CCGG | 4 cut(s) | 131, 443, 613, 1850 |
| HphI | GGTGA | 4 cut(s) | 76, 1540, 1603, 2736 |
| Hpy166II | GTNNAC | 5 cut(s) | 388, 510, 2129, 2167, 2716 |
| Hpy8I | GTNNAC | 5 cut(s) | 388, 510, 2129, 2167, 2716 |
| Hpy99I | CGWCG | 6 cut(s) | 31, 104, 107, 159, 402, 2016 |
| HpyCH4III | ACNGT | 8 cut(s) | 79, 711, 739, 1624, 1650, 1662, 1955, 2325 |
| HpyCH4IV | ACGT | 2 cut(s) | 1444, 1495 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 371, 497, 980, 1392, 2540 |
| HpyF3I | CTNAG | 9 cut(s) | 309, 411, 450, 1429, 1514, 1722, 2476, 2648, 2669 |
| HpySE526I | ACGT | 2 cut(s) | 1444, 1495 |
| Hsp92I | GRCGYC | 1 cut(s) | 2011 |
| Hsp92II | CATG | 8 cut(s) | 374, 1026, 1055, 1114, 1369, 1553, 1637, 2777 |
| HspAI | GCGC | 4 cut(s) | 248, 368, 392, 2528 |
| Kpn2I | TCCGGA | 1 cut(s) | 1849 |
| Ksp22I | TGATCA | 1 cut(s) | 2187 |
| Kzo9I | GATC | 7 cut(s) | 202, 402, 834, 1480, 2187, 2288, 2397 |
| LguI | GCTCTTC | 2 cut(s) | 146, 936 |
| LmnI | GCTCC | 5 cut(s) | 109, 342, 1333, 1924, 2575 |
| Lsp1109I | GCAGC | 4 cut(s) | 70, 1270, 1407, 2422 |
| LweI | GCATC | 8 cut(s) | 104, 168, 1077, 1119, 1138, 1472, 1480, 1783 |
| MabI | ACCWGGT | 1 cut(s) | 1675 |
| MaeI | CTAG | 9 cut(s) | 501, 560, 1262, 2042, 2142, 2258, 2457, 2463, 2484 |
| MaeII | ACGT | 2 cut(s) | 1444, 1495 |
| MaeIII | GTNAC | 4 cut(s) | 555, 644, 1232, 1568 |
| MalI | GATC | 7 cut(s) | 204, 404, 836, 1482, 2189, 2290, 2399 |
| MbiI | CCGCTC | 1 cut(s) | 139 |
| MboI | GATC | 7 cut(s) | 202, 402, 834, 1480, 2187, 2288, 2397 |
| MflI | RGATCY | 1 cut(s) | 2397 |
| MhlI | GDGCHC | 8 cut(s) | 53, 114, 137, 570, 1247, 1515, 1669, 2677 |
| MlyI | GAGTC | 5 cut(s) | 505, 515, 829, 2258, 2276 |
| MmeI | TCCRAC | 5 cut(s) | 24, 123, 178, 297, 1582 |
| MroI | TCCGGA | 1 cut(s) | 1849 |
| MseI | TTAA | 8 cut(s) | 678, 1812, 1844, 2157, 2237, 2559, 2610, 2736 |
| MslI | CAYNNNNRTG | 3 cut(s) | 720, 1690, 2778 |
| MspI | CCGG | 4 cut(s) | 131, 443, 613, 1850 |
| MspR9I | CCNGG | 5 cut(s) | 131, 132, 1677, 2061, 2639 |
| Mva1269I | GAATGC | 2 cut(s) | 1723, 2048 |
| MvaI | CCWGG | 3 cut(s) | 1677, 2061, 2639 |
| MvnI | CGCG | 8 cut(s) | 107, 279, 327, 368, 392, 397, 1478, 2565 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 371, 497, 980, 1392, 2540 |
| NciI | CCSGG | 2 cut(s) | 131, 132 |
| NdeII | GATC | 7 cut(s) | 202, 402, 834, 1480, 2187, 2288, 2397 |
| NheI | GCTAGC | 1 cut(s) | 1261 |
| NlaIII | CATG | 8 cut(s) | 374, 1026, 1055, 1114, 1369, 1553, 1637, 2777 |
| NlaIV | GGNNCC | 8 cut(s) | 111, 135, 435, 474, 858, 1208, 2399, 2771 |
| NmeAIII | GCCGAG | 2 cut(s) | 493, 543 |
| NmuCI | GTSAC | 2 cut(s) | 1232, 1568 |
| NspI | RCATGY | 2 cut(s) | 374, 1114 |
| PaeI | GCATGC | 2 cut(s) | 374, 1114 |
| PciSI | GCTCTTC | 2 cut(s) | 146, 936 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 32, 515 |
| PctI | GAATGC | 2 cut(s) | 1723, 2048 |
| Ple19I | CGATCG | 1 cut(s) | 205 |
| PleI | GAGTC | 5 cut(s) | 505, 514, 828, 2258, 2276 |
| PmaCI | CACGTG | 2 cut(s) | 1445, 1496 |
| PmlI | CACGTG | 2 cut(s) | 1445, 1496 |
| PpsI | GAGTC | 5 cut(s) | 505, 514, 828, 2258, 2276 |
| Ppu21I | YACGTR | 2 cut(s) | 1445, 1496 |
| PshBI | ATTAAT | 3 cut(s) | 2237, 2559, 2736 |
| Psp6I | CCWGG | 3 cut(s) | 1675, 2059, 2637 |
| PspCI | CACGTG | 2 cut(s) | 1445, 1496 |
| PspFI | CCCAGC | 1 cut(s) | 1132 |
| PspGI | CCWGG | 3 cut(s) | 1675, 2059, 2637 |
| PspN4I | GGNNCC | 8 cut(s) | 111, 135, 435, 474, 858, 1208, 2399, 2771 |
| PspOMI | GGGCCC | 1 cut(s) | 133 |
| PspPI | GGNCC | 6 cut(s) | 133, 134, 433, 1073, 1207, 2769 |
| PsuI | RGATCY | 1 cut(s) | 2397 |
| PvuI | CGATCG | 1 cut(s) | 205 |
| RsaI | GTAC | 4 cut(s) | 594, 788, 1305, 1982 |
| RsaNI | GTAC | 4 cut(s) | 593, 787, 1304, 1981 |
| RseI | CAYNNNNRTG | 3 cut(s) | 720, 1690, 2778 |
| SalI | GTCGAC | 1 cut(s) | 508 |
| SapI | GCTCTTC | 2 cut(s) | 146, 936 |
| SaqAI | TTAA | 8 cut(s) | 678, 1812, 1844, 2157, 2237, 2559, 2610, 2736 |
| Sau3AI | GATC | 7 cut(s) | 202, 402, 834, 1480, 2187, 2288, 2397 |
| Sau96I | GGNCC | 6 cut(s) | 133, 134, 433, 1073, 1207, 2769 |
| SchI | GAGTC | 5 cut(s) | 505, 515, 829, 2258, 2276 |
| ScrFI | CCNGG | 5 cut(s) | 131, 132, 1677, 2061, 2639 |
| SduI | GDGCHC | 8 cut(s) | 53, 114, 137, 570, 1247, 1515, 1669, 2677 |
| SexAI | ACCWGGT | 1 cut(s) | 1675 |
| SfaNI | GCATC | 8 cut(s) | 104, 168, 1077, 1119, 1138, 1472, 1480, 1783 |
| SfcI | CTRYAG | 1 cut(s) | 1821 |
| SinI | GGWCC | 3 cut(s) | 433, 1207, 2769 |
| SmaI | CCCGGG | 1 cut(s) | 132 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 720, 1690, 2778 |
| SmlI | CTYRAG | 5 cut(s) | 62, 632, 1540, 2284, 2570 |
| SmoI | CTYRAG | 5 cut(s) | 62, 632, 1540, 2284, 2570 |
| SpeI | ACTAGT | 1 cut(s) | 559 |
| SphI | GCATGC | 2 cut(s) | 374, 1114 |
| SspI | AATATT | 2 cut(s) | 658, 1119 |
| SspMI | CTAG | 9 cut(s) | 501, 560, 1262, 2042, 2142, 2258, 2457, 2463, 2484 |
| StyD4I | CCNGG | 5 cut(s) | 129, 130, 1675, 2059, 2637 |
| StyI | CCWWGG | 2 cut(s) | 429, 1076 |
| TaaI | ACNGT | 8 cut(s) | 79, 711, 739, 1624, 1650, 1662, 1955, 2325 |
| TaiI | ACGT | 2 cut(s) | 1447, 1498 |
| TaqI | TCGA | 2 cut(s) | 29, 509 |
| TatI | WGTACW | 2 cut(s) | 786, 1303 |
| TauI | GCSGC | 6 cut(s) | 196, 199, 330, 368, 397, 428 |
| Tru1I | TTAA | 8 cut(s) | 678, 1812, 1844, 2157, 2237, 2559, 2610, 2736 |
| Tru9I | TTAA | 8 cut(s) | 678, 1812, 1844, 2157, 2237, 2559, 2610, 2736 |
| TscAI | CASTG | 5 cut(s) | 194, 714, 1179, 1667, 2497 |
| TseFI | GTSAC | 2 cut(s) | 1232, 1568 |
| TseI | GCWGC | 4 cut(s) | 58, 1258, 1395, 2410 |
| Tsp45I | GTSAC | 2 cut(s) | 1232, 1568 |
| TspGWI | ACGGA | 4 cut(s) | 415, 847, 892, 2390 |
| TspMI | CCCGGG | 1 cut(s) | 130 |
| TspRI | CASTG | 5 cut(s) | 194, 714, 1179, 1667, 2497 |
| VpaK11BI | GGWCC | 3 cut(s) | 433, 1207, 2769 |
| VspI | ATTAAT | 3 cut(s) | 2237, 2559, 2736 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1421 |
| XapI | RAATTY | 2 cut(s) | 1355, 2445 |
| XbaI | TCTAGA | 3 cut(s) | 2041, 2141, 2483 |
| XceI | RCATGY | 2 cut(s) | 374, 1114 |
| XmaI | CCCGGG | 1 cut(s) | 130 |
| XmiI | GTMKAC | 1 cut(s) | 509 |
| XspI | CTAG | 9 cut(s) | 501, 560, 1262, 2042, 2142, 2258, 2457, 2463, 2484 |