Rroxscaffold_3G00239110

Ion channel

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
28665679 .. 28676850
11172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239110.1

Sequence Viewer

Length: 2829 bp
ATGCTTGATCGCAATGAAGAGTCGTCGAAGCCCGACAAGCCGGAAAGCCCACCGCAGCTGAAGAAATCACGGACTATAAGCGGCGACGATGCAACCCCAATCTTCCCGGGCCCACTGTTCCCAGCCGTTCGACGCATCTCCACCATTCCTTCCTCCCACAACTGGCCCCCGCCCGATCGCCACGCGTCGACTACGGCGGCGGACCACCGCGACTTCTCTGACCGTGACTGGGTCTTTCCGTCCTTTGTGCTCCCACAGAATCCTTCCAAACGAAGCAGCAAGAAACACGCCTCCGATGCATCCATCGCTTCCCAGCTTGCGGGGGCCACCGAAGCTGCTGCTGAGAGGAAGAAAATTAAGTTGGTGCCCCAGCCCGGACGTGAAGCACCTTCAACGAGCGAGTTGACTCGCCCGAGCTCCGGCACCCGGACTCGAGATTTGAAACCTTCTTTGTTGCTATTATTTTTGCTCACTTTCATTTGTATATTATCTGTACCTTATGCAGTTTATCTGCGGCAAAGAATTGCAAAACTTGAGGAATGTTGTATCAGTAAAAATGTTGGTACAGATGACAATATTGAGGCTTCACTGTCTGAGAAGAATCCAACAATTTTGCGTTTTCCTAATGCCGAAAGAAGAACTCTTGTTTTGTATTCTGTGGTCTTTACACTGGCCATGCCATTTGTGCTGTACAAACATCTTGATTATTTTTCCCATTTGACAATCCTCTCAAAAAACAAGAATAACAAAGAGGGGGTTCCCTTGAAGAAGAGGATAGCCTATATAGTGGATGTGTGCTTTTCTGTATATCCATATGCTAAACTACTTGCACTTCTCTTTGCAACAATATTACTAATAGGGTTTGGTGGACTGGCATTGTATGCAGTCAATAAAAATAGCTTTGCTGAAGCTTTTTGGCTTTCATGGACTTTCGTTGCTGATTCTGGAAACCATGCTGATACAGAGGGCATTGGGCCAAGGATAGTTTCTGTCTCTATTAGTTCAGGAGGCATGCTGATATTTGCAATGATGCTTGGGCTTGTTTCTGATGCTATATCAGAGAAGGTTGACTCACTAAGGAAAGGGAAGAGTGAAGTCATTGAAAGGAACCACATACTCATTCTTGGATGGAGTGATAAACTGGGTTCGCTTCTCAAGCAGCTTGCTATAGCAAACAAGAGTGTTGGTGGTGGTGTTGTTGTTGTACTTGCTGAAAGAGACAAGGAGGAAATGGAGATAGATATTGCAAAACTTGAATTTGATTTCATGGGTATGTCTGTTATATGCAGAAGTGGCAGTCCTCTTATACTTGCTGACCTAAAGAAGGTCTCAGTTTCGAAGGCACGTGCTATCATTGTATTGGCATCTGATGAAAATGCAGATCAGAGTGATGCACGTGCTCTGAGGGTTGTTCTAAGCCTCACTGGGGTGAAAGAGGGTTTGAGGGGACATGTTGTTGTAGAGATGAGTGACCTGGATAATGAGCCTCTGGTGAAGCTTGTTGGTGGAGAACTCATTGAAACAGTAGTAGCACATGATGTGATTGGGCGGTTAATGATACAGTGTGCTCTACAGCCTGGTCTTGCGCAGAGTTTGTTGGGTTCAATATTATGTGCTCAATCTGCAGTTTCTTCTTGGTTGGTGAGATGTGGTGGGTTCTATGCTGGTAAGGCTTCAGTTTGTGGTGGTAGTCATGGTTTAGTTTCATCTACTATATGGGAGGATATATTGGGATTTGAGAATGCTGAGTTTTACATCAAAAGGTGGCCTCAGTTGGATGGTCTTCGTTTCGAAAATGTGCTCGTTTCATTTCCTGATGCAATTCCCTGTGGAATCAAGGTTGCTGCAGATGGTGGAAAGATAAATTTAAATCCCGATGATAAATATGTTATGAAAGAAGGGGATGAAGTTCTTGTTATAGCTGAAGATGACGACACTTATGCTCCATCTGCCTTTCCAGAGGTATGTGCTGGCCTTTGTCCAAACACTGTTGAACCTCCCAAATACCCCGAGAAGATATTGTTCTGTGGCTGGCGTCGTGACATAGACGATATGATACTGGTTCTAGAGGCATTCTTGCCTCTAGGTTCCGAACTTTGGATGTTCAATGAGGTTCCAGAAAAAGAAAGAGAGAAGAAACTTACAGATGGTGGACTTGATATTTCGCGATTGGAGAAGATAAAACTTGTTCACAAAGAAGGAAATGCTGTGATAAGACGGCATCTAGAGAGTCTTCCCTTGGAGACTTTTGATTCTATATTAATTCTTGCAGATGAATCACTAGAGGACTCTGTTGTGCATTCTGACTCGAGATCCCTTGCCACTCTTCTCCTTATACGAGATATACAGTCAAAGCGTCTTCCTTACAAAGAAACAAAGTCAACTTCCTTATCTGCATTTTCGCATAGCTCTTGGATTCGTGAAATGCAGCAAGCTTCAGACAAATCGATAATTATAAGTGAAATTCTGGATTCTAGGACTAGAAACCTGGTCTCTGTTTCCAGAATCAGTGATTATGTGCTGTCAAATGAACTGGTTAGTATGGCACTGGCAATGGTGGCTGAAGATAAGCAAATCAATCGCGTTCTTGAGGAGCTATTTGCGGAGGAGGGGAATGAGATGTGCATAAAACCGGCTGAACTCTATTTGTATGACCAGGAAGAGCTCTGCTTTTATGATATAATGCTTAGGGGTCGTCAAAGGCGGGAAGTTGTGATTGGATATCGCCTTGCAAATGCAGAGCGGGCCGTAATCAATCCATCACTGAAATCAGCAGTACGTAAATGGTCTCACGATGATGTTTTTGTGGTCATCTCCATAAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

942

Amino Acids

104.24

Weight (kDa)

5.72

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slo-like_RCK PF22614 369 - 473 9.6e-07 Calcium-activated potassium channel slowpoke-like RCK domain
Castor_Poll_mid PF06241 570 - 650 2.6e-31 Castor and Pollux, part of voltage-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2456
Acc16I TGCGCA 1 cut(s) 1587
AccB1I GGYRCC 2 cut(s) 364, 422
AccBSI CCGCTC 1 cut(s) 2743
AccI GTMKAC 1 cut(s) 188
AccII CGCG 4 cut(s) 185, 210, 2167, 2583
AclWI GGATC 1 cut(s) 2307
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 3 cut(s) 1256, 1864, 2463
AcuI CTGAAG 6 cut(s) 80, 927, 1659, 1944, 2421, 2583
AcvI CACGTG 2 cut(s) 1346, 1397
AcyI GRCGYC 1 cut(s) 2035
AfaI GTAC 5 cut(s) 495, 565, 692, 1206, 2778
AfiI CCNNNNNNNGG 9 cut(s) 162, 229, 319, 374, 419, 426, 1324, 1426, 2097
AflIII ACRYGT 2 cut(s) 183, 1450
AgsI TTSAA 9 cut(s) 393, 442, 766, 1103, 1256, 1520, 1605, 1994, 2107
AjiI CACGTC 1 cut(s) 380
AjnI CCWGG 4 cut(s) 1473, 1576, 2487, 2655
AjuI GAANNNNNNNTTGG 6 cut(s) 344, 376, 970, 1002, 2700, 2732
AleI CACNNNNGTG 1 cut(s) 1427
Alw21I GWGCWC 7 cut(s) 252, 419, 1402, 1570, 1618, 1803, 2667
Alw26I GTCTC 6 cut(s) 997, 1212, 1333, 2237, 2497, 2793
AlwI GGATC 1 cut(s) 2307
Ama87I CYCGRG 5 cut(s) 106, 412, 432, 2009, 2308
AoxI GGCC 8 cut(s) 109, 164, 324, 672, 974, 1766, 1972, 2745
ApaI GGGCCC 1 cut(s) 113
ApeKI GCWGC 7 cut(s) 55, 276, 335, 338, 1159, 1844, 2428
ApoI RAATTY 3 cut(s) 1256, 1864, 2463
ArsI GACNNNNNNTTYG 2 cut(s) 421, 453
AseI ATTAAT 1 cut(s) 2261
AspLEI GCGC 1 cut(s) 1588
AspS9I GGNCC 7 cut(s) 109, 110, 165, 202, 324, 974, 2745
AsuC2I CCSGG 4 cut(s) 107, 108, 375, 427
AsuHPI GGTGA 3 cut(s) 1441, 1504, 1654
AsuII TTCGAA 2 cut(s) 1337, 1791
AvaI CYCGRG 5 cut(s) 106, 412, 432, 2009, 2308
AvaII GGWCC 1 cut(s) 202
BaeGI GKGCMC 2 cut(s) 113, 369
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 2 cut(s) 364, 422
BanII GRGCYC 3 cut(s) 113, 419, 2667
BbrPI CACGTG 2 cut(s) 1346, 1397
BbsI GAAGAC 3 cut(s) 1775, 2225, 2351
Bbv12I GWGCWC 7 cut(s) 252, 419, 1402, 1570, 1618, 1803, 2667
BbvI GCAGC 7 cut(s) 67, 288, 322, 325, 1171, 1831, 2440
BccI CCATC 7 cut(s) 311, 1122, 1772, 1844, 1954, 2141, 2767
BceAI ACGGC 4 cut(s) 110, 210, 2234, 2732
BcgI CGANNNNNNTGC 6 cut(s) 320, 354, 1922, 1956, 2561, 2595
BciT130I CCWGG 4 cut(s) 1475, 1578, 2489, 2657
BcnI CCSGG 4 cut(s) 107, 108, 375, 427
BcoDI GTCTC 6 cut(s) 997, 1212, 1333, 2237, 2497, 2793
BfaI CTAG 6 cut(s) 2066, 2084, 2225, 2282, 2475, 2481
BfmI CTRYAG 4 cut(s) 1167, 1571, 1623, 1845
Bme1390I CCNGG 8 cut(s) 107, 108, 375, 427, 1475, 1578, 2489, 2657
Bme18I GGWCC 1 cut(s) 202
BmeT110I CYCGRG 5 cut(s) 106, 412, 432, 2009, 2308
BmgBI CACGTC 1 cut(s) 380
BmgT120I GGNCC 7 cut(s) 109, 110, 165, 202, 324, 974, 2745
BmiI GGNNCC 9 cut(s) 111, 167, 325, 366, 424, 759, 1109, 2089, 2115
BmrFI CCNGG 8 cut(s) 107, 108, 375, 427, 1475, 1578, 2489, 2657
BmrI ACTGGG 3 cut(s) 238, 1151, 1434
BmuI ACTGGG 3 cut(s) 238, 1151, 1434
BpiI GAAGAC 3 cut(s) 1775, 2225, 2351
Bpu10I CCTNAGC 1 cut(s) 2687
Bpu14I TTCGAA 2 cut(s) 1337, 1791
BpuEI CTTGAG 3 cut(s) 554, 1139, 2609
BpuMI CCSGG 4 cut(s) 107, 108, 375, 427
Bsa29I ATCGAT 1 cut(s) 2447
BsaAI YACGTR 3 cut(s) 1346, 1397, 2780
BsaHI GRCGYC 1 cut(s) 2035
BsaI GGTCTC 3 cut(s) 1333, 2497, 2793
BsaJI CCNNGG 3 cut(s) 106, 977, 2238
BsaXI ACNNNNNCTCC 2 cut(s) 1927, 1957
Bsc4I CCNNNNNNNGG 9 cut(s) 162, 229, 319, 374, 419, 426, 1324, 1426, 2097
Bse118I RCCGGY 1 cut(s) 2632
Bse1I ACTGG 9 cut(s) 167, 233, 675, 876, 1146, 1429, 2064, 2538, 2553
Bse3DI GCAATG 3 cut(s) 19, 1032, 2559
BseBI CCWGG 4 cut(s) 1475, 1578, 2489, 2657
BseCI ATCGAT 1 cut(s) 2447
BseDI CCNNGG 3 cut(s) 106, 977, 2238
BseGI GGATG 6 cut(s) 299, 796, 1133, 1783, 1909, 2106
BseLI CCNNNNNNNGG 9 cut(s) 162, 229, 319, 374, 419, 426, 1324, 1426, 2097
BseMI GCAATG 3 cut(s) 19, 1032, 2559
BseMII CTCAG 6 cut(s) 333, 585, 1344, 1394, 1737, 1784
BseNI ACTGG 9 cut(s) 167, 233, 675, 876, 1146, 1429, 2064, 2538, 2553
BseRI GAGGAG 2 cut(s) 2606, 2621
BseSI GKGCMC 2 cut(s) 113, 369
BseXI GCAGC 7 cut(s) 67, 288, 322, 325, 1171, 1831, 2440
BseYI CCCAGC 3 cut(s) 121, 312, 369
Bsh1236I CGCG 4 cut(s) 185, 210, 2167, 2583
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 8 cut(s) 111, 166, 326, 674, 976, 1768, 1974, 2747
BshNI GGYRCC 2 cut(s) 364, 422
BshVI ATCGAT 1 cut(s) 2447
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 7 cut(s) 252, 419, 1402, 1570, 1618, 1803, 2667
BsiHKCI CYCGRG 5 cut(s) 106, 412, 432, 2009, 2308
BsiSI CCGG 6 cut(s) 41, 107, 375, 420, 427, 2633
BslFI GGGAC 1 cut(s) 1461
BslI CCNNNNNNNGG 9 cut(s) 162, 229, 319, 374, 419, 426, 1324, 1426, 2097
BsmAI GTCTC 6 cut(s) 997, 1212, 1333, 2237, 2497, 2793
BsmFI GGGAC 1 cut(s) 1461
BsmI GAATGC 3 cut(s) 1747, 2072, 2299
BsnI GGCC 8 cut(s) 111, 166, 326, 674, 976, 1768, 1974, 2747
Bso31I GGTCTC 3 cut(s) 1333, 2497, 2793
BsoBI CYCGRG 5 cut(s) 106, 412, 432, 2009, 2308
Bsp119I TTCGAA 2 cut(s) 1337, 1791
Bsp120I GGGCCC 1 cut(s) 109
Bsp1286I GDGCHC 9 cut(s) 113, 252, 369, 419, 1402, 1570, 1618, 1803, 2667
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 4 cut(s) 7, 175, 1381, 2312
Bsp68I TCGCGA 1 cut(s) 2167
BspANI GGCC 8 cut(s) 111, 166, 326, 674, 976, 1768, 1974, 2747
BspCNI CTCAG 6 cut(s) 334, 586, 1343, 1395, 1738, 1783
BspDI ATCGAT 1 cut(s) 2447
BspFNI CGCG 4 cut(s) 185, 210, 2167, 2583
BspLI GGNNCC 9 cut(s) 111, 167, 325, 366, 424, 759, 1109, 2089, 2115
BspMAI CTGCAG 2 cut(s) 1627, 1849
BspPI GGATC 1 cut(s) 2307
BspQI GCTCTTC 1 cut(s) 2655
BspT104I TTCGAA 2 cut(s) 1337, 1791
BspT107I GGYRCC 2 cut(s) 364, 422
BspTNI GGTCTC 3 cut(s) 1333, 2497, 2793
BsrBI CCGCTC 1 cut(s) 2743
BsrDI GCAATG 3 cut(s) 19, 1032, 2559
BsrFI RCCGGY 1 cut(s) 2632
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 9 cut(s) 167, 233, 675, 876, 1146, 1429, 2064, 2538, 2553
BssAI RCCGGY 1 cut(s) 2632
BssECI CCNNGG 3 cut(s) 106, 977, 2238
BssMI GATC 4 cut(s) 7, 175, 1381, 2312
BssNI GRCGYC 1 cut(s) 2035
BssT1I CCWWGG 2 cut(s) 977, 2238
Bst2UI CCWGG 4 cut(s) 1475, 1578, 2489, 2657
Bst4CI ACNGT 7 cut(s) 117, 224, 591, 1525, 1563, 1990, 2349
Bst6I CTCTTC 5 cut(s) 12, 764, 1082, 2331, 2655
BstACI GRCGYC 1 cut(s) 2035
BstAPI GCANNNNNTGC 1 cut(s) 881
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 3 cut(s) 1346, 1397, 2780
BstBI TTCGAA 2 cut(s) 1337, 1791
BstC8I GCNNGC 7 cut(s) 318, 1013, 1164, 1972, 2033, 2433, 2745
BstDEI CTNAG 9 cut(s) 342, 594, 1076, 1330, 1403, 1415, 1746, 1770, 2687
BstENI CCTNNNNNAGG 1 cut(s) 1322
BstF5I GGATG 6 cut(s) 299, 796, 1133, 1783, 1909, 2106
BstFNI CGCG 4 cut(s) 185, 210, 2167, 2583
BstHHI GCGC 1 cut(s) 1588
BstKTI GATC 4 cut(s) 10, 178, 1384, 2315
BstMAI GTCTC 6 cut(s) 997, 1212, 1333, 2237, 2497, 2793
BstMBI GATC 4 cut(s) 7, 175, 1381, 2312
BstMCI CGRYCG 1 cut(s) 178
BstNI CCWGG 4 cut(s) 1475, 1578, 2489, 2657
BstNSI RCATGY 2 cut(s) 1015, 1454
BstSCI CCNGG 8 cut(s) 105, 106, 373, 425, 1473, 1576, 2487, 2655
BstSFI CTRYAG 4 cut(s) 1167, 1571, 1623, 1845
BstSLI GKGCMC 2 cut(s) 113, 369
BstSNI TACGTA 1 cut(s) 2780
BstUI CGCG 4 cut(s) 185, 210, 2167, 2583
BstV1I GCAGC 7 cut(s) 67, 288, 322, 325, 1171, 1831, 2440
BstV2I GAAGAC 3 cut(s) 1775, 2225, 2351
BstX2I RGATCY 1 cut(s) 2312
BstYI RGATCY 1 cut(s) 2312
Bsu15I ATCGAT 1 cut(s) 2447
BsuRI GGCC 8 cut(s) 111, 166, 326, 674, 976, 1768, 1974, 2747
BsuTUI ATCGAT 1 cut(s) 2447
BtgZI GCGATG 1 cut(s) 289
BtrI CACGTC 1 cut(s) 380
BtsCI GGATG 6 cut(s) 299, 796, 1133, 1783, 1909, 2106
BtsIMutI CAGTG 9 cut(s) 113, 587, 668, 1422, 1568, 1986, 2515, 2546, 2762
BtuMI TCGCGA 1 cut(s) 2167
Cac8I GCNNGC 7 cut(s) 318, 1013, 1164, 1972, 2033, 2433, 2745
CfoI GCGC 1 cut(s) 1588
Cfr10I RCCGGY 1 cut(s) 2632
Cfr13I GGNCC 7 cut(s) 109, 110, 165, 202, 324, 974, 2745
Cfr9I CCCGGG 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 2447
CseI GACGC 4 cut(s) 141, 174, 2024, 2345
CsiI ACCWGGT 1 cut(s) 2487
Csp6I GTAC 5 cut(s) 494, 564, 691, 1205, 2777
CviAII CATG 8 cut(s) 676, 924, 953, 1012, 1267, 1451, 1535, 1694
CviQI GTAC 5 cut(s) 494, 564, 691, 1205, 2777
DdeI CTNAG 9 cut(s) 342, 594, 1076, 1330, 1403, 1415, 1746, 1770, 2687
DpnI GATC 4 cut(s) 9, 177, 1383, 2314
DpnII GATC 4 cut(s) 7, 175, 1381, 2312
DraI TTTAAA 1 cut(s) 1869
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 5 cut(s) 12, 764, 1082, 2331, 2655
EarI CTCTTC 5 cut(s) 12, 764, 1082, 2331, 2655
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 2 cut(s) 417, 2665
Eco105I TACGTA 1 cut(s) 2780
Eco130I CCWWGG 2 cut(s) 977, 2238
Eco24I GRGCYC 3 cut(s) 113, 419, 2667
Eco31I GGTCTC 3 cut(s) 1333, 2497, 2793
Eco32I GATATC 1 cut(s) 2723
Eco47I GGWCC 1 cut(s) 202
Eco53kI GAGCTC 2 cut(s) 417, 2665
Eco57I CTGAAG 6 cut(s) 80, 927, 1659, 1944, 2421, 2583
Eco72I CACGTG 2 cut(s) 1346, 1397
Eco88I CYCGRG 5 cut(s) 106, 412, 432, 2009, 2308
EcoICRI GAGCTC 2 cut(s) 417, 2665
EcoNI CCTNNNNNAGG 1 cut(s) 1322
EcoRII CCWGG 4 cut(s) 1473, 1576, 2487, 2655
EcoRV GATATC 1 cut(s) 2723
EcoT14I CCWWGG 2 cut(s) 977, 2238
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 3 cut(s) 113, 419, 2667
ErhI CCWWGG 2 cut(s) 977, 2238
FaeI CATG 8 cut(s) 679, 927, 956, 1015, 1270, 1454, 1538, 1697
FaqI GGGAC 1 cut(s) 1461
FatI CATG 8 cut(s) 675, 923, 952, 1011, 1266, 1450, 1534, 1693
FauI CCCGC 4 cut(s) 177, 313, 2697, 2736
FauNDI CATATG 1 cut(s) 814
FblI GTMKAC 1 cut(s) 188
FokI GGATG 6 cut(s) 286, 803, 1140, 1790, 1916, 2113
FriOI GRGCYC 3 cut(s) 113, 419, 2667
FspBI CTAG 6 cut(s) 2066, 2084, 2225, 2282, 2475, 2481
FspI TGCGCA 1 cut(s) 1587
GlaI GCGC 1 cut(s) 1587
GsaI CCCAGC 3 cut(s) 125, 316, 373
HaeIII GGCC 8 cut(s) 111, 166, 326, 674, 976, 1768, 1974, 2747
HapII CCGG 6 cut(s) 41, 107, 375, 420, 427, 2633
HgaI GACGC 4 cut(s) 141, 174, 2024, 2345
HhaI GCGC 1 cut(s) 1588
Hin1I GRCGYC 1 cut(s) 2035
Hin1II CATG 8 cut(s) 679, 927, 956, 1015, 1270, 1454, 1538, 1697
Hin6I GCGC 1 cut(s) 1586
HinP1I GCGC 1 cut(s) 1586
HincII GTYRAC 4 cut(s) 189, 405, 1069, 2382
HindII GTYRAC 4 cut(s) 189, 405, 1069, 2382
HindIII AAGCTT 3 cut(s) 909, 1496, 2433
HpaII CCGG 6 cut(s) 41, 107, 375, 420, 427, 2633
HphI GGTGA 3 cut(s) 1441, 1504, 1654
Hpy166II GTNNAC 7 cut(s) 189, 405, 869, 1069, 2153, 2191, 2382
Hpy8I GTNNAC 7 cut(s) 189, 405, 869, 1069, 2153, 2191, 2382
Hpy99I CGWCG 5 cut(s) 28, 89, 135, 190, 2040
HpyAV CCTTC 9 cut(s) 159, 273, 399, 456, 1057, 1318, 1333, 1892, 2192
HpyCH4III ACNGT 7 cut(s) 117, 224, 591, 1525, 1563, 1990, 2349
HpyCH4IV ACGT 4 cut(s) 379, 1345, 1396, 2779
HpyF3I CTNAG 9 cut(s) 342, 594, 1076, 1330, 1403, 1415, 1746, 1770, 2687
HpySE526I ACGT 4 cut(s) 379, 1345, 1396, 2779
Hsp92I GRCGYC 1 cut(s) 2035
Hsp92II CATG 8 cut(s) 679, 927, 956, 1015, 1270, 1454, 1538, 1697
HspAI GCGC 1 cut(s) 1586
Kzo9I GATC 4 cut(s) 7, 175, 1381, 2312
LguI GCTCTTC 1 cut(s) 2655
LmnI GCTCC 4 cut(s) 255, 422, 1948, 2593
Lsp1109I GCAGC 7 cut(s) 67, 288, 322, 325, 1171, 1831, 2440
MabI ACCWGGT 1 cut(s) 2487
MaeI CTAG 6 cut(s) 2066, 2084, 2225, 2282, 2475, 2481
MaeII ACGT 4 cut(s) 379, 1345, 1396, 2779
MaeIII GTNAC 3 cut(s) 224, 1469, 2039
MalI GATC 4 cut(s) 9, 177, 1383, 2314
MbiI CCGCTC 1 cut(s) 2743
MboI GATC 4 cut(s) 7, 175, 1381, 2312
MflI RGATCY 1 cut(s) 2312
MhlI GDGCHC 9 cut(s) 113, 252, 369, 419, 1402, 1570, 1618, 1803, 2667
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 9 cut(s) 354, 522, 609, 1256, 1821, 1864, 2262, 2451, 2463
MluI ACGCGT 1 cut(s) 183
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 7 cut(s) 29, 400, 424, 1064, 2239, 2282, 2300
MmeI TCCRAC 2 cut(s) 629, 1755
Mox20I TGGCCA 1 cut(s) 674
Mph1103I ATGCAT 1 cut(s) 301
MscI TGGCCA 1 cut(s) 674
MseI TTAA 4 cut(s) 357, 1553, 1868, 2261
MslI CAYNNNNRTG 3 cut(s) 1271, 1427, 2796
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 6 cut(s) 41, 107, 375, 420, 427, 2633
MspR9I CCNGG 8 cut(s) 107, 108, 375, 427, 1475, 1578, 2489, 2657
Mva1269I GAATGC 3 cut(s) 1747, 2072, 2299
MvaI CCWGG 4 cut(s) 1475, 1578, 2489, 2657
MvnI CGCG 4 cut(s) 185, 210, 2167, 2583
NciI CCSGG 4 cut(s) 107, 108, 375, 427
NdeI CATATG 1 cut(s) 814
NdeII GATC 4 cut(s) 7, 175, 1381, 2312
NlaIII CATG 8 cut(s) 679, 927, 956, 1015, 1270, 1454, 1538, 1697
NlaIV GGNNCC 9 cut(s) 111, 167, 325, 366, 424, 759, 1109, 2089, 2115
NmuCI GTSAC 3 cut(s) 224, 1469, 2039
NruI TCGCGA 1 cut(s) 2167
NsbI TGCGCA 1 cut(s) 1587
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 2 cut(s) 1015, 1454
NspV TTCGAA 2 cut(s) 1337, 1791
OliI CACNNNNGTG 1 cut(s) 1427
PaeI GCATGC 1 cut(s) 1015
PaeR7I CTCGAG 2 cut(s) 432, 2308
PciI ACATGT 1 cut(s) 1450
PciSI GCTCTTC 1 cut(s) 2655
PctI GAATGC 3 cut(s) 1747, 2072, 2299
PfeI GAWTC 9 cut(s) 259, 601, 941, 1833, 2252, 2276, 2416, 2471, 2505
PflFI GACNNNGTC 1 cut(s) 230
Ple19I CGATCG 1 cut(s) 178
PleI GAGTC 7 cut(s) 28, 400, 424, 1064, 2238, 2282, 2300
PmaCI CACGTG 2 cut(s) 1346, 1397
PmlI CACGTG 2 cut(s) 1346, 1397
PpsI GAGTC 7 cut(s) 28, 400, 424, 1064, 2238, 2282, 2300
Ppu21I YACGTR 3 cut(s) 1346, 1397, 2780
PscI ACATGT 1 cut(s) 1450
PshBI ATTAAT 1 cut(s) 2261
PsiI TTATAA 1 cut(s) 2456
Psp124BI GAGCTC 2 cut(s) 419, 2667
Psp6I CCWGG 4 cut(s) 1473, 1576, 2487, 2655
PspCI CACGTG 2 cut(s) 1346, 1397
PspFI CCCAGC 3 cut(s) 121, 312, 369
PspGI CCWGG 4 cut(s) 1473, 1576, 2487, 2655
PspN4I GGNNCC 9 cut(s) 111, 167, 325, 366, 424, 759, 1109, 2089, 2115
PspOMI GGGCCC 1 cut(s) 109
PspPI GGNCC 7 cut(s) 109, 110, 165, 202, 324, 974, 2745
PstI CTGCAG 2 cut(s) 1627, 1849
PsuI RGATCY 1 cut(s) 2312
PsyI GACNNNGTC 1 cut(s) 230
PvuI CGATCG 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 58
RruI TCGCGA 1 cut(s) 2167
RsaI GTAC 5 cut(s) 495, 565, 692, 1206, 2778
RsaNI GTAC 5 cut(s) 494, 564, 691, 1205, 2777
RseI CAYNNNNRTG 3 cut(s) 1271, 1427, 2796
SacI GAGCTC 2 cut(s) 419, 2667
SalI GTCGAC 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 2655
SaqAI TTAA 4 cut(s) 357, 1553, 1868, 2261
Sau3AI GATC 4 cut(s) 7, 175, 1381, 2312
Sau96I GGNCC 7 cut(s) 109, 110, 165, 202, 324, 974, 2745
SchI GAGTC 7 cut(s) 29, 400, 424, 1064, 2239, 2282, 2300
ScrFI CCNGG 8 cut(s) 107, 108, 375, 427, 1475, 1578, 2489, 2657
SduI GDGCHC 9 cut(s) 113, 252, 369, 419, 1402, 1570, 1618, 1803, 2667
SexAI ACCWGGT 1 cut(s) 2487
SfcI CTRYAG 4 cut(s) 1167, 1571, 1623, 1845
Sfr274I CTCGAG 2 cut(s) 432, 2308
SfuI TTCGAA 2 cut(s) 1337, 1791
SinI GGWCC 1 cut(s) 202
SlaI CTCGAG 2 cut(s) 432, 2308
SmaI CCCGGG 1 cut(s) 108
SmiI ATTTAAAT 1 cut(s) 1869
SmiMI CAYNNNNRTG 3 cut(s) 1271, 1427, 2796
SmlI CTYRAG 5 cut(s) 432, 533, 1154, 2308, 2588
SmoI CTYRAG 5 cut(s) 432, 533, 1154, 2308, 2588
SnaBI TACGTA 1 cut(s) 2780
SphI GCATGC 1 cut(s) 1015
Sse9I AATT 9 cut(s) 354, 522, 609, 1256, 1821, 1864, 2262, 2451, 2463
SspI AATATT 3 cut(s) 577, 849, 1608
SspMI CTAG 6 cut(s) 2066, 2084, 2225, 2282, 2475, 2481
SstI GAGCTC 2 cut(s) 419, 2667
StyD4I CCNGG 8 cut(s) 105, 106, 373, 425, 1473, 1576, 2487, 2655
StyI CCWWGG 2 cut(s) 977, 2238
SwaI ATTTAAAT 1 cut(s) 1869
TaaI ACNGT 7 cut(s) 117, 224, 591, 1525, 1563, 1990, 2349
TaiI ACGT 4 cut(s) 382, 1348, 1399, 2782
TaqI TCGA 8 cut(s) 26, 130, 188, 433, 1337, 1791, 2309, 2447
TasI AATT 9 cut(s) 354, 522, 609, 1256, 1821, 1864, 2262, 2451, 2463
TatI WGTACW 2 cut(s) 690, 1204
TauI GCSGC 3 cut(s) 84, 200, 517
TfiI GAWTC 9 cut(s) 259, 601, 941, 1833, 2252, 2276, 2416, 2471, 2505
Tru1I TTAA 4 cut(s) 357, 1553, 1868, 2261
Tru9I TTAA 4 cut(s) 357, 1553, 1868, 2261
TscAI CASTG 9 cut(s) 120, 594, 675, 1429, 1568, 1993, 2515, 2553, 2769
TseFI GTSAC 3 cut(s) 224, 1469, 2039
TseI GCWGC 7 cut(s) 55, 276, 335, 338, 1159, 1844, 2428
Tsp45I GTSAC 3 cut(s) 224, 1469, 2039
TspGWI ACGGA 2 cut(s) 85, 228
TspMI CCCGGG 1 cut(s) 106
TspRI CASTG 9 cut(s) 120, 594, 675, 1429, 1568, 1993, 2515, 2553, 2769
Tth111I GACNNNGTC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 202
VspI ATTAAT 1 cut(s) 2261
XagI CCTNNNNNAGG 1 cut(s) 1322
XapI RAATTY 3 cut(s) 1256, 1864, 2463
XbaI TCTAGA 2 cut(s) 2065, 2224
XceI RCATGY 2 cut(s) 1015, 1454
XhoI CTCGAG 2 cut(s) 432, 2308
XmaI CCCGGG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 6 cut(s) 2066, 2084, 2225, 2282, 2475, 2481
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.