pycom09g16360

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0003387
Physical Location & Seq
Reverse (-)
16643035 .. 16644504
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 888 bp
ATGGCCGCAGCGATGGTTACAATACCTGTGATTCTCCGGAGTTCCGACGATATGTTTGAATTTCCCGGTACAGGTGTAAGTCTCGGGGACATGGTTCTGGATTTCATCGAGGAAGTCGAGGTGTCGACGGAGTTTAATACTACCTCTGGCTCCGACGAAGACGACGAGAATTCTTGCAGTGTGGAAGAGAACAAGGCATTTTGGGAAGAACAAGACCAACTTCTGCGGGCGACATTGTGCAAGAGCAGTAGCGTTGAATCGAAAATTCGACAAGCCACTAAGGAAGCGTTAAGGGAAATCAATTCATCAAGCGAAGAATACTGCGTTTGTGCGAGAACGGTGGCCGGAGGTTGCCGGAAATGTTTGCGTACCGAAGTATGCAAACGGCTAATTGAATCCGGATACAATTGTGTCATTTGCAAGTCTAAGTGGAGAAGTTCAACAAATGCCCCTGCAGGGGAGCATACTTATTTGGAAGTGCTGGACAACAGTTCAAAGAGAGGGGAGATTAGGGTTGCAATTGAGCTAAATTTCGGACCTGAGTTCGAGATGGCAAGAGCTAGCGAAAACTACAACAGAATGATTAGCTGGTTGCCTGAAGTGTTTGTTGGGAAAGCCGAAAGACTACGAGCTTTGATCAAGATTTTGTGCCGCGCAGCCAAGAAATGTATGAAGGAGAAGAAGATGCACTTGGGACCTTGGAGGAAGCACAAGTACATGCAAGCCAAGTGGTTTGGGACGTTGGAGCGGTCAACGCCGGGGTCGTTGCCAGTCGGATTTTCGCACGGGCTGCCGAAGCCGAAGGCCTCGATTTTGGCCTTTGATTTGTTGGAGGTGGCGATGACTGCAGGCTTGCATTGCTCTAGTACTGCAGTTGAAGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

296

Amino Acids

32.9

Weight (kDa)

6.28

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 30 - 250 5.8e-74 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 125
AccII CGCG 1 cut(s) 654
AccIII TCCGGA 2 cut(s) 36, 398
AciI CCGC 4 cut(s) 6, 226, 652, 748
AcoI YGGCCR 2 cut(s) 3, 342
AcsI RAATTY 4 cut(s) 59, 169, 264, 529
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 4 cut(s) 70, 370, 716, 868
AfiI CCNNNNNNNGG 3 cut(s) 71, 456, 457
AgsI TTSAA 6 cut(s) 59, 257, 395, 441, 495, 878
AjuI GAANNNNNNNTTGG 4 cut(s) 591, 623, 674, 706
AluBI AGCT 4 cut(s) 526, 560, 588, 632
AluI AGCT 4 cut(s) 526, 560, 588, 632
Alw26I GTCTC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 83
Aor13HI TCCGGA 2 cut(s) 36, 398
AoxI GGCC 4 cut(s) 3, 342, 804, 816
ApeKI GCWGC 3 cut(s) 8, 656, 790
ApoI RAATTY 4 cut(s) 59, 169, 264, 529
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 1 cut(s) 656
AspS9I GGNCC 2 cut(s) 536, 695
AsuC2I CCSGG 2 cut(s) 66, 759
AsuNHI GCTAGC 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 2 cut(s) 536, 695
BaeI ACNNNNGTAYC 4 cut(s) 60, 93, 394, 427
BarI GAAGNNNNNNTAC 2 cut(s) 698, 730
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 20, 668, 777
BccI CCATC 2 cut(s) 7, 544
BceAI ACGGC 1 cut(s) 401
BciVI GTATCC 1 cut(s) 395
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 2 cut(s) 66, 759
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 2 cut(s) 561, 864
BfmI CTRYAG 3 cut(s) 453, 846, 870
BfuI GTATCC 1 cut(s) 395
BisI GCNGC 5 cut(s) 6, 9, 652, 657, 791
BlsI GCNGC 5 cut(s) 7, 10, 653, 658, 792
BmcAI AGTACT 1 cut(s) 868
Bme1390I CCNGG 2 cut(s) 66, 759
Bme18I GGWCC 2 cut(s) 536, 695
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 536, 695
BmiI GGNNCC 2 cut(s) 151, 696
BmrFI CCNGG 2 cut(s) 66, 759
BmsI GCATC 1 cut(s) 675
BmtI GCTAGC 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 165
BpuMI CCSGG 2 cut(s) 66, 759
BsaJI CCNNGG 2 cut(s) 698, 758
BsaWI WCCGGW 2 cut(s) 36, 398
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 456, 457
Bse1I ACTGG 1 cut(s) 770
Bse3DI GCAATG 1 cut(s) 856
BseAI TCCGGA 2 cut(s) 36, 398
BseDI CCNNGG 2 cut(s) 698, 758
BseLI CCNNNNNNNGG 3 cut(s) 71, 456, 457
BseMI GCAATG 1 cut(s) 856
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 770
BseXI GCAGC 3 cut(s) 20, 668, 777
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 4 cut(s) 5, 344, 806, 818
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 6 cut(s) 37, 66, 345, 355, 399, 758
BslFI GGGAC 3 cut(s) 101, 708, 751
BslI CCNNNNNNNGG 3 cut(s) 71, 456, 457
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 3 cut(s) 101, 708, 751
BsnI GGCC 4 cut(s) 5, 344, 806, 818
BsoBI CYCGRG 1 cut(s) 83
Bsp13I TCCGGA 2 cut(s) 36, 398
Bsp143I GATC 1 cut(s) 636
BspACI CCGC 4 cut(s) 6, 226, 652, 748
BspANI GGCC 4 cut(s) 5, 344, 806, 818
BspCNI CTCAG 1 cut(s) 532
BspEI TCCGGA 2 cut(s) 36, 398
BspFNI CGCG 1 cut(s) 654
BspLI GGNNCC 2 cut(s) 151, 696
BspMAI CTGCAG 3 cut(s) 457, 850, 874
BspOI GCTAGC 1 cut(s) 564
BsrBI CCGCTC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 856
BsrI ACTGG 1 cut(s) 770
BssECI CCNNGG 2 cut(s) 698, 758
BssMI GATC 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 698
Bst4CI ACNGT 2 cut(s) 340, 491
Bst6I CTCTTC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 790
BstC8I GCNNGC 5 cut(s) 228, 562, 723, 850, 854
BstDEI CTNAG 3 cut(s) 279, 426, 540
BstFNI CGCG 1 cut(s) 654
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 1 cut(s) 639
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 636
BstMWI GCNNNNNNNGC 5 cut(s) 754, 790, 796, 845, 858
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 2 cut(s) 64, 757
BstSFI CTRYAG 3 cut(s) 453, 846, 870
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 20, 668, 777
BstV2I GAAGAC 1 cut(s) 165
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 4 cut(s) 5, 344, 806, 818
BtgZI GCGATG 2 cut(s) 26, 854
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 5 cut(s) 228, 562, 723, 850, 854
CfoI GCGC 1 cut(s) 656
Cfr13I GGNCC 2 cut(s) 536, 695
Csp6I GTAC 4 cut(s) 69, 369, 715, 867
CspCI CAANNNNNGTGG 2 cut(s) 710, 745
CviAII CATG 2 cut(s) 91, 718
CviQI GTAC 4 cut(s) 69, 369, 715, 867
DdeI CTNAG 3 cut(s) 279, 426, 540
DpnI GATC 1 cut(s) 638
DpnII GATC 1 cut(s) 636
EaeI YGGCCR 2 cut(s) 3, 342
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 698
Eco147I AGGCCT 1 cut(s) 806
Eco47I GGWCC 2 cut(s) 536, 695
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 698
FaeI CATG 2 cut(s) 94, 721
FaiI YATR 6 cut(s) 53, 92, 379, 465, 671, 719
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 674, 706
FaqI GGGAC 3 cut(s) 101, 708, 751
FatI CATG 2 cut(s) 90, 717
FauI CCCGC 1 cut(s) 219
FbaI TGATCA 1 cut(s) 636
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 5 cut(s) 6, 9, 652, 657, 791
Fsp4HI GCNGC 5 cut(s) 6, 9, 652, 657, 791
FspBI CTAG 2 cut(s) 561, 864
GlaI GCGC 1 cut(s) 655
GluI GCNGC 5 cut(s) 6, 9, 652, 657, 791
HaeIII GGCC 4 cut(s) 5, 344, 806, 818
HapII CCGG 6 cut(s) 37, 66, 345, 355, 399, 758
HhaI GCGC 1 cut(s) 656
Hin1II CATG 2 cut(s) 94, 721
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HincII GTYRAC 2 cut(s) 126, 753
HindII GTYRAC 2 cut(s) 126, 753
HinfI GANTC 3 cut(s) 31, 257, 395
HpaII CCGG 6 cut(s) 37, 66, 345, 355, 399, 758
Hpy166II GTNNAC 2 cut(s) 126, 753
Hpy188I TCNGA 4 cut(s) 46, 154, 536, 776
Hpy188III TCNNGA 5 cut(s) 37, 98, 399, 547, 640
Hpy8I GTNNAC 2 cut(s) 126, 753
Hpy99I CGWCG 4 cut(s) 50, 130, 158, 167
HpyAV CCTTC 2 cut(s) 667, 796
HpyCH4III ACNGT 2 cut(s) 340, 491
HpyCH4IV ACGT 1 cut(s) 740
HpyF10VI GCNNNNNNNGC 5 cut(s) 754, 790, 796, 845, 858
HpyF3I CTNAG 3 cut(s) 279, 426, 540
HpySE526I ACGT 1 cut(s) 740
Hsp92II CATG 2 cut(s) 94, 721
HspAI GCGC 1 cut(s) 654
Kpn2I TCCGGA 2 cut(s) 36, 398
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 1 cut(s) 636
LmnI GCTCC 3 cut(s) 155, 460, 745
Lsp1109I GCAGC 3 cut(s) 20, 668, 777
LweI GCATC 1 cut(s) 675
MaeI CTAG 2 cut(s) 561, 864
MaeII ACGT 1 cut(s) 740
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 638
MbiI CCGCTC 1 cut(s) 748
MboI GATC 1 cut(s) 636
MboII GAAGA 6 cut(s) 170, 197, 218, 326, 691, 694
MfeI CAATTG 2 cut(s) 406, 519
MluCI AATT 8 cut(s) 59, 169, 264, 301, 390, 406, 519, 529
MmeI TCCRAC 5 cut(s) 69, 177, 723, 754, 810
MnlI CCTC 8 cut(s) 103, 112, 154, 341, 494, 696, 817, 826
MroI TCCGGA 2 cut(s) 36, 398
MseI TTAA 2 cut(s) 135, 290
MspI CCGG 6 cut(s) 37, 66, 345, 355, 399, 758
MspR9I CCNGG 2 cut(s) 66, 759
MunI CAATTG 2 cut(s) 406, 519
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 5 cut(s) 754, 790, 796, 845, 858
NciI CCSGG 2 cut(s) 66, 759
NdeII GATC 1 cut(s) 636
NheI GCTAGC 1 cut(s) 560
NlaIII CATG 2 cut(s) 94, 721
NlaIV GGNNCC 2 cut(s) 151, 696
NspI RCATGY 1 cut(s) 721
PceI AGGCCT 1 cut(s) 806
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 162, 761
PfeI GAWTC 3 cut(s) 31, 257, 395
PkrI GCNGC 5 cut(s) 7, 10, 653, 658, 792
PpuMI RGGWCCY 1 cut(s) 695
Psp5II RGGWCCY 1 cut(s) 695
PspN4I GGNNCC 2 cut(s) 151, 696
PspPI GGNCC 2 cut(s) 536, 695
PspPPI RGGWCCY 1 cut(s) 695
PstI CTGCAG 3 cut(s) 457, 850, 874
RsaI GTAC 4 cut(s) 70, 370, 716, 868
RsaNI GTAC 4 cut(s) 69, 369, 715, 867
SalI GTCGAC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 135, 290
SatI GCNGC 5 cut(s) 6, 9, 652, 657, 791
Sau3AI GATC 1 cut(s) 636
Sau96I GGNCC 2 cut(s) 536, 695
SbfI CCTGCAGG 1 cut(s) 457
ScaI AGTACT 1 cut(s) 868
ScrFI CCNGG 2 cut(s) 66, 759
SdaI CCTGCAGG 1 cut(s) 457
SfaNI GCATC 1 cut(s) 675
SfcI CTRYAG 3 cut(s) 453, 846, 870
SinI GGWCC 2 cut(s) 536, 695
Sse8387I CCTGCAGG 1 cut(s) 457
Sse9I AATT 8 cut(s) 59, 169, 264, 301, 390, 406, 519, 529
SseBI AGGCCT 1 cut(s) 806
SsiI CCGC 4 cut(s) 6, 226, 652, 748
SspMI CTAG 2 cut(s) 561, 864
StuI AGGCCT 1 cut(s) 806
StyD4I CCNGG 2 cut(s) 64, 757
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 2 cut(s) 340, 491
TaiI ACGT 1 cut(s) 743
TaqI TCGA 7 cut(s) 108, 117, 125, 260, 268, 546, 809
TasI AATT 8 cut(s) 59, 169, 264, 301, 390, 406, 519, 529
TatI WGTACW 2 cut(s) 714, 866
TauI GCSGC 2 cut(s) 8, 654
TfiI GAWTC 3 cut(s) 31, 257, 395
Tru1I TTAA 2 cut(s) 135, 290
Tru9I TTAA 2 cut(s) 135, 290
TscAI CASTG 1 cut(s) 184
TseI GCWGC 3 cut(s) 8, 656, 790
TspDTI ATGAA 3 cut(s) 94, 294, 686
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 536, 695
XapI RAATTY 4 cut(s) 59, 169, 264, 529
XceI RCATGY 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 2 cut(s) 561, 864
ZrmI AGTACT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.