pycom10g24550

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0003387
Physical Location & Seq
Reverse (-)
26383482 .. 26386038
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
ATGGCAAGAGCAGCTCCGGCCACCGCTCGAGAGTTATTAGCGGCGAGTTTTTCCGGCATGGTTTTCGGGTTCCTCGAAGACGGCCACGAGTTTCCGGAAAGTTGCGGCAGCAGCGACGGAAGCCAAGAAAATGACGCCTTTTTGTTAGATGAAGAAGAGGAAGCCGGAGATCAGGAGGAGGACAAGAGGTTTTGGGAAAAACAGCACCAACTTTTACAAGCTACCTTATACAGGACTAGTTCTCTAGAGACGAGGATTAGAAGTTTGACAAGGGAGGCGGTGAAGGAGATACAGCGGTCAGGGACGGAGTGTGGTTGCGGGAAACCGATGGCGAGCGGTTGCCGGAGCTGCCTCATGAGAGAAGTTTCCGGCAGACTTAGCAATGCTGGTTACAACAGTGCCATGTGCAAGTCTAAGTGGAGGAGTTCACCGGACATTCCTTCAGGAGAGCATTCATATTTGGATGTGGTGAACAATTCAAGTCTAAAGAAGGGGGAGGTGAGGGTGATCATAGAGCTGAACTTCAGAGACGAATTCGAGATGGCTCGGGCGAGCAACGAATACAACGATCTGGTTCAAAAACTCCCTGAAGTTTTTGTCGGCAAAGTTGAGAGACTGCAAAGCCTGATTAAAATTTTATGTTCTGCCGCCAAGAAATGCATGAAGGAAAAGAAAATGCACATGGGGCCATGGAGGAAGCAGAAGTACATGCAAGCAAAGTGGCTCGGCCCCTGCAAAAGAACAACATCGACGCCACTTCTGGCCGTGGGAGACTCCGCCAGGCTGCGACCGAAGCCTAAGGAGTCGATGCTGACCGTAGATTTGCTAGAGATGGTGCATAACAGGCATTGCATGACAGCAGTTCAAGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

292

Amino Acids

32.74

Weight (kDa)

8.27

Isoelectric Point (pI)

52.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 19 - 247 4e-80 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 26, 336
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 9 cut(s) 24, 41, 105, 278, 295, 318, 336, 648, 777
AcoI YGGCCR 3 cut(s) 18, 82, 762
AcsI RAATTY 2 cut(s) 533, 633
AcuI CTGAAG 3 cut(s) 426, 508, 609
AcyI GRCGYC 2 cut(s) 135, 752
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 3 cut(s) 480, 578, 866
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 1 cut(s) 779
AluBI AGCT 4 cut(s) 14, 221, 348, 517
AluI AGCT 4 cut(s) 14, 221, 348, 517
Alw26I GTCTC 4 cut(s) 242, 522, 607, 765
Ama87I CYCGRG 2 cut(s) 27, 546
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 5 cut(s) 18, 82, 686, 727, 762
ApeKI GCWGC 5 cut(s) 11, 108, 111, 348, 784
ApoI RAATTY 2 cut(s) 533, 633
ArsI GACNNNNNNTTYG 2 cut(s) 805, 837
AspS9I GGNCC 2 cut(s) 686, 728
AsuHPI GGTGA 5 cut(s) 292, 420, 481, 511, 517
AvaI CYCGRG 2 cut(s) 27, 546
AxyI CCTNAGG 1 cut(s) 798
BaeI ACNNNNGTAYC 2 cut(s) 281, 314
BarI GAAGNNNNNNTAC 2 cut(s) 689, 721
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 5 cut(s) 23, 120, 123, 335, 771
BccI CCATC 3 cut(s) 322, 535, 826
BceAI ACGGC 2 cut(s) 97, 749
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 1 cut(s) 781
BclI TGATCA 1 cut(s) 507
BcoDI GTCTC 4 cut(s) 242, 522, 607, 765
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 3 cut(s) 237, 245, 827
BisI GCNGC 8 cut(s) 12, 42, 106, 109, 112, 349, 648, 785
BlsI GCNGC 8 cut(s) 13, 43, 107, 110, 113, 350, 649, 786
Bme1390I CCNGG 1 cut(s) 781
BmeT110I CYCGRG 2 cut(s) 27, 546
BmgT120I GGNCC 2 cut(s) 686, 728
BmiI GGNNCC 3 cut(s) 71, 687, 730
BmrFI CCNGG 1 cut(s) 781
BmsI GCATC 1 cut(s) 798
BpiI GAAGAC 1 cut(s) 84
BsaHI GRCGYC 2 cut(s) 135, 752
BsaJI CCNNGG 2 cut(s) 689, 765
BsaWI WCCGGW 2 cut(s) 94, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 798
Bse3DI GCAATG 2 cut(s) 388, 847
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 781
BseDI CCNNGG 2 cut(s) 689, 765
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 2 cut(s) 388, 847
BseRI GAGGAG 2 cut(s) 191, 436
BseXI GCAGC 5 cut(s) 23, 120, 123, 335, 771
Bsh1285I CGRYCG 1 cut(s) 791
BshFI GGCC 5 cut(s) 20, 84, 688, 729, 764
BsiEI CGRYCG 1 cut(s) 791
BsiHKCI CYCGRG 2 cut(s) 27, 546
BsiSI CCGG 7 cut(s) 17, 54, 95, 165, 343, 369, 431
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 4 cut(s) 242, 522, 607, 765
BsmBI CGTCTC 2 cut(s) 242, 522
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 5 cut(s) 20, 84, 688, 729, 764
BsoBI CYCGRG 2 cut(s) 27, 546
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 3 cut(s) 169, 507, 568
Bsp19I CCATGG 1 cut(s) 689
BspACI CCGC 9 cut(s) 24, 41, 105, 278, 295, 318, 336, 648, 777
BspANI GGCC 5 cut(s) 20, 84, 688, 729, 764
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 3 cut(s) 71, 687, 730
BsrBI CCGCTC 2 cut(s) 26, 336
BsrDI GCAATG 2 cut(s) 388, 847
BssECI CCNNGG 2 cut(s) 689, 765
BssMI GATC 3 cut(s) 169, 507, 568
BssNI GRCGYC 2 cut(s) 135, 752
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 689
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 781
Bst4CI ACNGT 2 cut(s) 398, 817
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 2 cut(s) 135, 752
BstC8I GCNNGC 3 cut(s) 334, 553, 714
BstDEI CTNAG 3 cut(s) 377, 414, 798
BstDSI CCRYGG 2 cut(s) 689, 765
BstENI CCTNNNNNAGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 3 cut(s) 172, 510, 571
BstMAI GTCTC 4 cut(s) 242, 522, 607, 765
BstMBI GATC 3 cut(s) 169, 507, 568
BstMCI CGRYCG 1 cut(s) 791
BstMWI GCNNNNNNNGC 9 cut(s) 11, 17, 111, 120, 348, 378, 685, 793, 844
BstNI CCWGG 1 cut(s) 781
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 1 cut(s) 779
BstV1I GCAGC 5 cut(s) 23, 120, 123, 335, 771
BstV2I GAAGAC 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 798
BsuRI GGCC 5 cut(s) 20, 84, 688, 729, 764
BtgI CCRYGG 2 cut(s) 689, 765
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 3 cut(s) 334, 553, 714
CciI TCATGA 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 686, 728
CseI GACGC 2 cut(s) 143, 760
Csp6I GTAC 1 cut(s) 706
CspCI CAANNNNNGTGG 2 cut(s) 701, 736
CviAII CATG 8 cut(s) 58, 355, 403, 661, 682, 690, 709, 853
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 3 cut(s) 377, 414, 798
DpnI GATC 3 cut(s) 171, 509, 570
DpnII GATC 3 cut(s) 169, 507, 568
EaeI YGGCCR 3 cut(s) 18, 82, 762
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 766
Eco130I CCWWGG 1 cut(s) 689
Eco57I CTGAAG 3 cut(s) 426, 508, 609
Eco81I CCTNAGG 1 cut(s) 798
Eco88I CYCGRG 2 cut(s) 27, 546
EcoNI CCTNNNNNAGG 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 779
EcoT14I CCWWGG 1 cut(s) 689
EcoT22I ATGCAT 1 cut(s) 662
ErhI CCWWGG 1 cut(s) 689
Esp3I CGTCTC 2 cut(s) 242, 522
FaeI CATG 8 cut(s) 61, 358, 406, 664, 685, 693, 712, 856
FaqI GGGAC 1 cut(s) 316
FatI CATG 8 cut(s) 57, 354, 402, 660, 681, 689, 708, 852
FauI CCCGC 1 cut(s) 311
FbaI TGATCA 1 cut(s) 507
Fnu4HI GCNGC 8 cut(s) 12, 42, 106, 109, 112, 349, 648, 785
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 8 cut(s) 12, 42, 106, 109, 112, 349, 648, 785
FspBI CTAG 3 cut(s) 237, 245, 827
GluI GCNGC 8 cut(s) 12, 42, 106, 109, 112, 349, 648, 785
HaeIII GGCC 5 cut(s) 20, 84, 688, 729, 764
HapII CCGG 7 cut(s) 17, 54, 95, 165, 343, 369, 431
HgaI GACGC 2 cut(s) 143, 760
Hin1I GRCGYC 2 cut(s) 135, 752
Hin1II CATG 8 cut(s) 61, 358, 406, 664, 685, 693, 712, 856
HinfI GANTC 2 cut(s) 773, 803
HpaII CCGG 7 cut(s) 17, 54, 95, 165, 343, 369, 431
HphI GGTGA 5 cut(s) 292, 420, 481, 511, 517
Hpy166II GTNNAC 2 cut(s) 428, 472
Hpy188I TCNGA 1 cut(s) 527
Hpy188III TCNNGA 7 cut(s) 29, 95, 173, 245, 355, 444, 538
Hpy8I GTNNAC 2 cut(s) 428, 472
Hpy99I CGWCG 2 cut(s) 119, 754
HpyAV CCTTC 4 cut(s) 277, 450, 484, 658
HpyCH4III ACNGT 2 cut(s) 398, 817
HpyCH4V TGCA 8 cut(s) 408, 619, 660, 679, 712, 735, 838, 852
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 17, 111, 120, 348, 378, 685, 793, 844
HpyF3I CTNAG 3 cut(s) 377, 414, 798
Hsp92I GRCGYC 2 cut(s) 135, 752
Hsp92II CATG 8 cut(s) 61, 358, 406, 664, 685, 693, 712, 856
Kpn2I TCCGGA 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 3 cut(s) 169, 507, 568
LmnI GCTCC 2 cut(s) 19, 345
Lsp1109I GCAGC 5 cut(s) 23, 120, 123, 335, 771
LweI GCATC 1 cut(s) 798
MaeI CTAG 3 cut(s) 237, 245, 827
MaeIII GTNAC 1 cut(s) 389
MalI GATC 3 cut(s) 171, 509, 570
MbiI CCGCTC 2 cut(s) 26, 336
MboI GATC 3 cut(s) 169, 507, 568
MboII GAAGA 3 cut(s) 89, 164, 167
MluCI AATT 3 cut(s) 475, 533, 633
MlyI GAGTC 2 cut(s) 767, 812
Mph1103I ATGCAT 1 cut(s) 662
MroI TCCGGA 1 cut(s) 94
MseI TTAA 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 7 cut(s) 17, 54, 95, 165, 343, 369, 431
MspR9I CCNGG 1 cut(s) 781
Mva1269I GAATGC 1 cut(s) 451
MvaI CCWGG 1 cut(s) 781
MwoI GCNNNNNNNGC 9 cut(s) 11, 17, 111, 120, 348, 378, 685, 793, 844
NcoI CCATGG 1 cut(s) 689
NdeII GATC 3 cut(s) 169, 507, 568
NlaIII CATG 8 cut(s) 61, 358, 406, 664, 685, 693, 712, 856
NlaIV GGNNCC 3 cut(s) 71, 687, 730
NmeAIII GCCGAG 1 cut(s) 705
NsiI ATGCAT 1 cut(s) 662
NspI RCATGY 1 cut(s) 712
PaeR7I CTCGAG 1 cut(s) 27
PagI TCATGA 1 cut(s) 354
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 564
PctI GAATGC 1 cut(s) 451
PkrI GCNGC 8 cut(s) 13, 43, 107, 110, 113, 350, 649, 786
PleI GAGTC 2 cut(s) 767, 811
PpsI GAGTC 2 cut(s) 767, 811
Psp6I CCWGG 1 cut(s) 779
PspGI CCWGG 1 cut(s) 779
PspN4I GGNNCC 3 cut(s) 71, 687, 730
PspPI GGNCC 2 cut(s) 686, 728
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 8 cut(s) 12, 42, 106, 109, 112, 349, 648, 785
Sau3AI GATC 3 cut(s) 169, 507, 568
Sau96I GGNCC 2 cut(s) 686, 728
SchI GAGTC 2 cut(s) 767, 812
ScrFI CCNGG 1 cut(s) 781
SetI ASST 7 cut(s) 16, 191, 223, 227, 350, 501, 519
SfaNI GCATC 1 cut(s) 798
Sfr274I CTCGAG 1 cut(s) 27
SlaI CTCGAG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 3 cut(s) 475, 533, 633
SsiI CCGC 9 cut(s) 24, 41, 105, 278, 295, 318, 336, 648, 777
SspMI CTAG 3 cut(s) 237, 245, 827
StyD4I CCNGG 1 cut(s) 779
StyI CCWWGG 1 cut(s) 689
TaaI ACNGT 2 cut(s) 398, 817
TaqI TCGA 5 cut(s) 28, 75, 537, 749, 806
TaqII GACCGA 1 cut(s) 805
TasI AATT 3 cut(s) 475, 533, 633
TatI WGTACW 1 cut(s) 705
TauI GCSGC 3 cut(s) 44, 108, 650
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 403
TseI GCWGC 5 cut(s) 11, 108, 111, 348, 784
TspDTI ATGAA 3 cut(s) 165, 444, 677
TspGWI ACGGA 2 cut(s) 132, 320
TspRI CASTG 1 cut(s) 403
XagI CCTNNNNNAGG 1 cut(s) 229
XapI RAATTY 2 cut(s) 533, 633
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 712
XhoI CTCGAG 1 cut(s) 27
XspI CTAG 3 cut(s) 237, 245, 827
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.