pycom111g03800

Mitochondrial outer membrane protein porin of 34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0003226
Physical Location & Seq
Reverse (-)
2308838 .. 2310657
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGGTGGGACCTGGGCTTTACACCGACATCGGCAAGAAAGCCAGAGATCTTCTGTACAGGGATTACCAGAGTGACCATAAGTTCACCATCACCACCTTCTCTCCCACTGGAGTGGCTATCACTTCTTCAGGAACAAAGAAAGGTGAGCTGTTTCTGGCTGATGTGAACACTCAGTTGAAGAACAAGAATGTCACAACTGATGTCAAAGTTGACACCGACTCCAATCTGTCCACCACTATTACGGTTGATCAACCTGCTCCTGGCCTGAAGGCAATCTTTAGCTTCAAAGTTCCTGATCAGAGGTCTGGCAAGGTGGAACTCCAATATCTGCATGACTATGCAGGGATAAGCTCCAGTGTTGGTTTGACAGCGAACCCTATTGTTAACTTCTCTGGTGTTATTGGAACCAATCAGCTTGCACTTGGTACTGATCTGTCATTCGACACCAAGACCGGGAATTTGACTAAATGCAATGCTGGACTGAGCTTCTCCAATGCTCGATCTAGTCGCTGCATTGACCCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005773 GO:0005774 GO:0005886 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009060 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010029 GO:0010033 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015980 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032592 GO:0034220 GO:0042170 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045333 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0055085 GO:0055114 GO:0065007 GO:0070013 GO:0071944 GO:0098542 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1900140 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

176

Amino Acids

18.75

Weight (kDa)

7.73

Isoelectric Point (pI)

19.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 3 - 166 1.8e-50 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 457
AcuI CTGAAG 2 cut(s) 111, 287
AfaI GTAC 2 cut(s) 56, 427
AfiI CCNNNNNNNGG 2 cut(s) 260, 453
AgsI TTSAA 2 cut(s) 178, 286
AjnI CCWGG 2 cut(s) 10, 259
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 5 cut(s) 148, 282, 351, 415, 486
AluI AGCT 5 cut(s) 148, 282, 351, 415, 486
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 510
ApoI RAATTY 1 cut(s) 457
ArsI GACNNNNNNTTYG 2 cut(s) 442, 474
AspS9I GGNCC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 3 cut(s) 76, 82, 155
AvaII GGWCC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 497
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 12, 261
BclI TGATCA 2 cut(s) 247, 295
BcnI CCSGG 1 cut(s) 454
BfaI CTAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 262
BglII AGATCT 1 cut(s) 46
BisI GCNGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 512
Bme1390I CCNGG 3 cut(s) 12, 261, 454
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 9, 406
BmrFI CCNGG 3 cut(s) 12, 261, 454
BpmI CTGGAG 2 cut(s) 129, 337
BpuMI CCSGG 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 11
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 453
Bse1I ACTGG 2 cut(s) 112, 354
Bse3DI GCAATG 1 cut(s) 478
BseBI CCWGG 2 cut(s) 12, 261
BseDI CCNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 2 cut(s) 260, 453
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 2 cut(s) 185, 473
BseNI ACTGG 2 cut(s) 112, 354
BseXI GCAGC 1 cut(s) 497
BshFI GGCC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 453
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 260, 453
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 1 cut(s) 264
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 5 cut(s) 46, 247, 295, 430, 500
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 2 cut(s) 184, 474
BspLI GGNNCC 2 cut(s) 9, 406
BspMI ACCTGC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 478
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 112, 354
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 5 cut(s) 46, 247, 295, 430, 500
Bst2UI CCWGG 2 cut(s) 12, 261
Bst4CI ACNGT 1 cut(s) 244
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 2 cut(s) 171, 482
BstKTI GATC 5 cut(s) 49, 250, 298, 433, 503
BstMBI GATC 5 cut(s) 46, 247, 295, 430, 500
BstNI CCWGG 2 cut(s) 12, 261
BstSCI CCNGG 3 cut(s) 10, 259, 452
BstV1I GCAGC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 105, 361
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 2 cut(s) 55, 426
CviAII CATG 1 cut(s) 332
CviQI GTAC 2 cut(s) 55, 426
DdeI CTNAG 2 cut(s) 171, 482
DpnI GATC 5 cut(s) 48, 249, 297, 432, 502
DpnII GATC 5 cut(s) 46, 247, 295, 430, 500
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 2 cut(s) 111, 287
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 10, 259
FaeI CATG 1 cut(s) 335
FaiI YATR 3 cut(s) 78, 333, 339
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 21
FatI CATG 1 cut(s) 331
FbaI TGATCA 2 cut(s) 247, 295
Fnu4HI GCNGC 1 cut(s) 511
Fsp4HI GCNGC 1 cut(s) 511
FspBI CTAG 1 cut(s) 504
GluI GCNGC 1 cut(s) 511
GsuI CTGGAG 2 cut(s) 129, 337
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 453
Hin1II CATG 1 cut(s) 335
HincII GTYRAC 2 cut(s) 211, 385
HindII GTYRAC 2 cut(s) 211, 385
HinfI GANTC 1 cut(s) 218
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 1 cut(s) 453
HphI GGTGA 3 cut(s) 76, 82, 155
Hpy166II GTNNAC 5 cut(s) 84, 166, 211, 231, 385
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 2 cut(s) 129, 293
Hpy8I GTNNAC 5 cut(s) 84, 166, 211, 231, 385
HpyAV CCTTC 2 cut(s) 106, 262
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 5 cut(s) 331, 341, 419, 471, 513
HpyF3I CTNAG 2 cut(s) 171, 482
Hsp92II CATG 1 cut(s) 335
Ksp22I TGATCA 2 cut(s) 247, 295
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 5 cut(s) 46, 247, 295, 430, 500
LmnI GCTCC 2 cut(s) 262, 356
Lsp1109I GCAGC 1 cut(s) 497
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 2 cut(s) 71, 190
MalI GATC 5 cut(s) 48, 249, 297, 432, 502
MboI GATC 5 cut(s) 46, 247, 295, 430, 500
MboII GAAGA 3 cut(s) 41, 117, 190
MflI RGATCY 1 cut(s) 46
MluCI AATT 1 cut(s) 457
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 1 cut(s) 294
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 2 cut(s) 110, 336
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 3 cut(s) 12, 261, 454
MvaI CCWGG 2 cut(s) 12, 261
NciI CCSGG 1 cut(s) 454
NdeII GATC 5 cut(s) 46, 247, 295, 430, 500
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 2 cut(s) 9, 406
NmuCI GTSAC 2 cut(s) 71, 190
OliI CACNNNNGTG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 512
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 10, 259
PspGI CCWGG 2 cut(s) 10, 259
PspN4I GGNNCC 2 cut(s) 9, 406
PspPI GGNCC 1 cut(s) 8
PspPPI RGGWCCY 1 cut(s) 8
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 2 cut(s) 56, 427
RsaNI GTAC 2 cut(s) 55, 426
RseI CAYNNNNRTG 2 cut(s) 110, 336
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 1 cut(s) 511
Sau3AI GATC 5 cut(s) 46, 247, 295, 430, 500
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 12, 261, 454
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 110, 336
Sse9I AATT 1 cut(s) 457
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 3 cut(s) 10, 259, 452
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 441, 499
TasI AATT 1 cut(s) 457
TatI WGTACW 1 cut(s) 54
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 2 cut(s) 112, 361
TseFI GTSAC 2 cut(s) 71, 190
TseI GCWGC 1 cut(s) 510
Tsp45I GTSAC 2 cut(s) 71, 190
TspRI CASTG 2 cut(s) 112, 361
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 457
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.