pycom11g21060

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001704
Physical Location & Seq
Reverse (-)
24166042 .. 24167458
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g21060.1

Sequence Viewer

Length: 1209 bp
ATGATTAAACAACCGGAAGTAATTTACTTAAGATACTTAGTTGACATTCATAAAAAATATCTAATGAATTATGAGTTCAATACATCATGTTTAGCAAAAAGACGAATATTCCTTGCACATTATCAGACAATCACTTATTCACAAACCTCATGTAGGGATAATAGTTTTCATTTCCCATCTCATGGAAAACCCTTTTCTCTCCGTTTAGCCCTATCTCTCTCTAAGGGTATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAAAACCTAGCGACAAACTCCTATGGTTTTCTTGTTAATGATAGTGACGATATTGATGATAGTGACAACCGTGACTTTGATACGGAGTTGGCTCTTCTAACTATGATAAATGTGCTAACCATGGATATGATGCAAAAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTATCCTTGCATAATATGGATTCCAAACATTCATGATATGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATTAGTGAACTATATCTCTAGGGATTGTGAAAGATGTTCCACTAGAAATATTCATGTTATTGCTTCGACTCATATTCCCCAAAAAGTGGATCCCACTTTTTCGCTCTTTCATATACTAGGGGATTTCACTTGGAAAATAAAATGTTCCATATTAATGGATTCGGTTCAAGATCATGGGATCTTTTTCTATCAGATAGGAAGGGTTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATTTATATGAAGAAGAAATCATGTAACGAAGGGGATTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAATTGTTCTGCCAGATCGGTCGCTCAAGACCTTTGGTCTCTACCCCAACCCGATGAAAAAAATGGAATCTCTTCTTATAGACTCATTGAGAATGATTATAATCTAGCTCATGGCCTATTAGAAGTAGGAGACACTCTGGTGGGATCCTCACGGATAGAAAAATATTGCAGTCAGTTTGATAATGATCGAGTGACCTTGCTTCTTCGGCCCGAACCAATGAATCCCTTAGATATGATGCAAAATGGATATTGTTCTATCGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

403

Amino Acids

46.49

Weight (kDa)

5.51

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 77 - 211 3.6e-06 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 993
AccB7I CCANNNNNTGG 2 cut(s) 182, 619
AclWI GGATC 7 cut(s) 255, 617, 630, 719, 770, 1032, 1045
AfaI GTAC 3 cut(s) 753, 833, 842
AfiI CCNNNNNNNGG 3 cut(s) 153, 182, 619
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 5 cut(s) 79, 437, 701, 895, 1196
AhdI GACNNNNNGTC 1 cut(s) 928
AleI CACNNNNGTG 1 cut(s) 1031
AluBI AGCT 1 cut(s) 1001
AluI AGCT 1 cut(s) 1001
Alw26I GTCTC 2 cut(s) 936, 1017
AlwI GGATC 7 cut(s) 255, 617, 630, 719, 770, 1032, 1045
AoxI GGCC 2 cut(s) 1006, 1100
AseI ATTAAT 1 cut(s) 686
Asp700I GAANNNNTTC 1 cut(s) 964
AspS9I GGNCC 1 cut(s) 1101
AsuHPI GGTGA 1 cut(s) 421
AsuII TTCGAA 2 cut(s) 441, 846
BamHI GGATCC 2 cut(s) 622, 1037
BccI CCATC 1 cut(s) 184
BciVI GTATCC 1 cut(s) 471
BclI TGATCA 1 cut(s) 1156
BcoDI GTCTC 2 cut(s) 936, 1017
BfaI CTAG 5 cut(s) 281, 552, 576, 650, 998
BfmI CTRYAG 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 28
BfuI GTATCC 1 cut(s) 471
BmeRI GACNNNNNGTC 1 cut(s) 928
BmgT120I GGNCC 1 cut(s) 1101
BmiI GGNNCC 2 cut(s) 624, 1039
BmsI GCATC 2 cut(s) 393, 1119
Bpu14I TTCGAA 2 cut(s) 441, 846
BpuEI CTTGAG 1 cut(s) 903
BsaBI GATNNNNATC 2 cut(s) 993, 1077
BsaI GGTCTC 1 cut(s) 936
BsaJI CCNNGG 2 cut(s) 393, 526
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 182, 619
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 462
Bse8I GATNNNNATC 2 cut(s) 993, 1077
BseDI CCNNGG 2 cut(s) 393, 526
BseGI GGATG 1 cut(s) 505
BseJI GATNNNNATC 2 cut(s) 993, 1077
BseLI CCNNNNNNNGG 3 cut(s) 153, 182, 619
BseMI GCAATG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 259
Bsh1285I CGRYCG 1 cut(s) 915
BshFI GGCC 2 cut(s) 1008, 1102
BsiEI CGRYCG 1 cut(s) 915
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 3 cut(s) 153, 182, 619
BsmAI GTCTC 2 cut(s) 936, 1017
BsnI GGCC 2 cut(s) 1008, 1102
Bso31I GGTCTC 1 cut(s) 936
Bsp119I TTCGAA 2 cut(s) 441, 846
Bsp1407I TGTACA 1 cut(s) 831
Bsp143I GATC 9 cut(s) 260, 622, 703, 711, 775, 908, 1037, 1078, 1156
Bsp19I CCATGG 1 cut(s) 393
BspANI GGCC 2 cut(s) 1008, 1102
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 624, 1039
BspPI GGATC 7 cut(s) 255, 617, 630, 719, 770, 1032, 1045
BspQI GCTCTTC 1 cut(s) 372
BspT104I TTCGAA 2 cut(s) 441, 846
BspTI CTTAAG 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 936
BsrDI GCAATG 1 cut(s) 462
BsrGI TGTACA 1 cut(s) 831
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 393, 526
BssMI GATC 9 cut(s) 260, 622, 703, 711, 775, 908, 1037, 1078, 1156
BssT1I CCWWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 2 cut(s) 372, 970
BstAFI CTTAAG 1 cut(s) 28
BstAUI TGTACA 1 cut(s) 831
BstBI TTCGAA 2 cut(s) 441, 846
BstDEI CTNAG 4 cut(s) 37, 222, 758, 1120
BstDSI CCRYGG 1 cut(s) 393
BstENI CCTNNNNNAGG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 505
BstKTI GATC 9 cut(s) 263, 625, 706, 714, 778, 911, 1040, 1081, 1159
BstMAI GTCTC 2 cut(s) 936, 1017
BstMBI GATC 9 cut(s) 260, 622, 703, 711, 775, 908, 1037, 1078, 1156
BstMCI CGRYCG 1 cut(s) 915
BstMWI GCNNNNNNNGC 1 cut(s) 1099
BstSFI CTRYAG 1 cut(s) 246
BstX2I RGATCY 4 cut(s) 622, 711, 775, 1037
BstXI CCANNNNNNTGG 1 cut(s) 688
BstYI RGATCY 4 cut(s) 622, 711, 775, 1037
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 2 cut(s) 1008, 1102
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 505
CciI TCATGA 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 1101
Csp6I GTAC 3 cut(s) 752, 832, 841
CviJI RGCY 5 cut(s) 209, 365, 1001, 1008, 1102
CviKI_1 RGCY 5 cut(s) 209, 365, 1001, 1008, 1102
CviQI GTAC 3 cut(s) 752, 832, 841
DdeI CTNAG 4 cut(s) 37, 222, 758, 1120
DpnI GATC 9 cut(s) 262, 624, 705, 713, 777, 910, 1039, 1080, 1158
DpnII GATC 9 cut(s) 260, 622, 703, 711, 775, 908, 1037, 1078, 1156
DriI GACNNNNNGTC 1 cut(s) 928
Eam1104I CTCTTC 2 cut(s) 372, 970
Eam1105I GACNNNNNGTC 1 cut(s) 928
EarI CTCTTC 2 cut(s) 372, 970
Eco130I CCWWGG 1 cut(s) 393
Eco31I GGTCTC 1 cut(s) 936
EcoNI CCTNNNNNAGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FbaI TGATCA 1 cut(s) 1156
FokI GGATG 1 cut(s) 512
FspBI CTAG 5 cut(s) 281, 552, 576, 650, 998
HaeIII GGCC 2 cut(s) 1008, 1102
HapII CCGG 1 cut(s) 14
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 9 cut(s) 478, 509, 601, 692, 821, 960, 975, 1114, 1184
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 2 cut(s) 43, 541
Hpy188I TCNGA 4 cut(s) 126, 726, 1161, 1189
Hpy188III TCNNGA 3 cut(s) 491, 701, 920
Hpy8I GTNNAC 2 cut(s) 43, 541
HpyAV CCTTC 4 cut(s) 443, 726, 809, 1193
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 6 cut(s) 116, 406, 468, 743, 1062, 1132
HpyF10VI GCNNNNNNNGC 1 cut(s) 1099
HpyF3I CTNAG 4 cut(s) 37, 222, 758, 1120
Ksp22I TGATCA 1 cut(s) 1156
Kzo9I GATC 9 cut(s) 260, 622, 703, 711, 775, 908, 1037, 1078, 1156
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 773
LpnPI CCDG 4 cut(s) 27, 240, 919, 1016
LweI GCATC 2 cut(s) 393, 1119
MaeI CTAG 5 cut(s) 281, 552, 576, 650, 998
MaeIII GTNAC 5 cut(s) 317, 335, 344, 809, 1084
MalI GATC 9 cut(s) 262, 624, 705, 713, 777, 910, 1039, 1080, 1158
MboI GATC 9 cut(s) 260, 622, 703, 711, 775, 908, 1037, 1078, 1156
MboII GAAGA 7 cut(s) 359, 808, 811, 877, 957, 1088, 1208
MflI RGATCY 4 cut(s) 622, 711, 775, 1037
MluCI AATT 8 cut(s) 21, 67, 437, 443, 514, 763, 869, 895
MlyI GAGTC 3 cut(s) 518, 595, 969
MnlI CCTC 3 cut(s) 157, 536, 1051
MroXI GAANNNNTTC 1 cut(s) 964
MseI TTAA 5 cut(s) 6, 29, 309, 686, 872
MslI CAYNNNNRTG 3 cut(s) 398, 686, 1031
MspCI CTTAAG 1 cut(s) 28
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 1099
NcoI CCATGG 1 cut(s) 393
NdeII GATC 9 cut(s) 260, 622, 703, 711, 775, 908, 1037, 1078, 1156
NlaIV GGNNCC 2 cut(s) 624, 1039
NmuCI GTSAC 4 cut(s) 317, 335, 344, 1084
NspV TTCGAA 2 cut(s) 441, 846
OliI CACNNNNGTG 1 cut(s) 1031
PagI TCATGA 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 964
PfeI GAWTC 6 cut(s) 478, 692, 821, 960, 1114, 1184
PflMI CCANNNNNTGG 2 cut(s) 182, 619
PleI GAGTC 3 cut(s) 517, 595, 969
PpsI GAGTC 3 cut(s) 517, 595, 969
PshBI ATTAAT 1 cut(s) 686
PsiI TTATAA 1 cut(s) 993
PspN4I GGNNCC 2 cut(s) 624, 1039
PspPI GGNCC 1 cut(s) 1101
PsuI RGATCY 4 cut(s) 622, 711, 775, 1037
RsaI GTAC 3 cut(s) 753, 833, 842
RsaNI GTAC 3 cut(s) 752, 832, 841
RseI CAYNNNNRTG 3 cut(s) 398, 686, 1031
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 5 cut(s) 6, 29, 309, 686, 872
Sau3AI GATC 9 cut(s) 260, 622, 703, 711, 775, 908, 1037, 1078, 1156
Sau96I GGNCC 1 cut(s) 1101
SchI GAGTC 3 cut(s) 518, 595, 969
SetI ASST 6 cut(s) 149, 244, 282, 927, 1003, 1091
SfaNI GCATC 2 cut(s) 393, 1119
SfcI CTRYAG 1 cut(s) 246
SfuI TTCGAA 2 cut(s) 441, 846
SmiMI CAYNNNNRTG 3 cut(s) 398, 686, 1031
SmlI CTYRAG 2 cut(s) 28, 918
SmoI CTYRAG 2 cut(s) 28, 918
Sse9I AATT 8 cut(s) 21, 67, 437, 443, 514, 763, 869, 895
SspI AATATT 3 cut(s) 108, 583, 1058
SspMI CTAG 5 cut(s) 281, 552, 576, 650, 998
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 5 cut(s) 441, 512, 599, 846, 1081
TaqII GACCGA 3 cut(s) 432, 518, 901
TasI AATT 8 cut(s) 21, 67, 437, 443, 514, 763, 869, 895
TatI WGTACW 2 cut(s) 751, 831
TfiI GAWTC 6 cut(s) 478, 692, 821, 960, 1114, 1184
Tru1I TTAA 5 cut(s) 6, 29, 309, 686, 872
Tru9I TTAA 5 cut(s) 6, 29, 309, 686, 872
TseFI GTSAC 4 cut(s) 317, 335, 344, 1084
Tsp45I GTSAC 4 cut(s) 317, 335, 344, 1084
TspGWI ACGGA 3 cut(s) 191, 371, 1060
Van91I CCANNNNNTGG 2 cut(s) 182, 619
Vha464I CTTAAG 1 cut(s) 28
VspI ATTAAT 1 cut(s) 686
XagI CCTNNNNNAGG 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 964
XspI CTAG 5 cut(s) 281, 552, 576, 650, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.