Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0001704

Physical Location & Seq

Genomic Coordinates Reverse (-)

197418 .. 199502

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGAAAGGGCATCAATTCAAATCCTGGATTTTCGAATTGAGAGAGATATTGAGAGAGATCAAGAATTCTCACTATTTCTTAGATTCATGGACCAAATTCAATTCAGTGGGATCTTTCATTCACATTTTTTTCCATCAAGAACGTTTTATAAAACTTTTGGACTTCCGAATTTGGAGTATCCTATTTTCACGCAATTCACATTTACAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAGTACTATTTGTAGTAGTGGTCCTTATATATCGTATTAACAATCGAAAGATGGTCGAGAGAAAAAATCTCTATTTGACAGGGCTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATACAGTGGAAGAATCTTTTGGGTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTGGTGGAGGAACTGGATCGGAAAAAAGAGGGATTCTAGTTGTAAGCTATCTAATGAAATCGTCGCTGGAATTGAGATCTCATTCAAAGAGAAAGATATCAAATATCCGGAGTTTCTTTTTGTATATTATATGGATGATCCGATTCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGCGAAACATACTCAACTTGAATTCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGAAAAAATACCAATTGAAGCGGAGGTTTTCTTCAAACAACAAGGAGCTGGGTCAACTATTCAATCAAATGAAATTGAGCATGTTTCCCATCTCTTCTCGAGAAACAAGTGGGCTATGCAAAATTGTGCTCAATTTCATATGTGGCAATTCCGCCAAGATCTCTTCTTTAGTTGGGGGAAGAATCCGCACGAATCGGATTTTTTGAGGAACATATCGAGAGAGAATTGGTTAGACAATGTGTGGTTGGTAAACAAGGATCGGTTTTTTAGCAAGGTACGGAATGTATCGTCAAATATTCAATATGATTCCACAAGATCTCGTTTTGTTCAAGTAACGGATTCTAGCCAATTGAAAGGATCCTCTGATCAATCCAGAGATCGTTTCGATTCCATTAGTAATGAGGATTCAGAATATCACACATTGATCAATCAAAGAGAGATTCAACAACTAAAAGAAAGATCGATTCTTTGGGATCCTTCTTTTCTTCAAACGGAACGAACAGAGATAGAATCAGACCGATTCCCTAAATGCCTTTCTGGATATTCCTCAATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAAGCATCTGCTTCCGGAAGAAATCGAAGAATTTCTTGGGAATCCTACAAGATCCCTTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATAGTTAATATATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCAAAGGATGAACTGGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCTATTTTGTGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACCGAGCCGGATCCGTTATATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAATGAGGATCAGAAAAAAATGGGTCCGGACCTCCTGCGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009575 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA DUF825

Protein Analysis

662

Amino Acids

78.63

Weight (kDa)

8.4

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf2	PF05695	1 - 649	0.0	Ycf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00860 ATCG01280
fragaria_vesca	FvH4_c3g00160
malus_domestica	MD15G1364000.v1.1 MD15G1364100.v1.1 MD15G1364300.v1.1
pyrus_communis	pycom11g21060 pycom12397g00050 pycom12397g00150 pycom13g12670 pycom13g17800 pycom1682g00010 pycom3137g00010 pycom3137g00020
rosa_chinensis	RchiOBHm_Chr2g0118461 RchiOBHm_Chr2g0118471
rosa_laevigata	RLG00000000001 RLG00000000007 RLG00000000030 RLG00000000031 RLG00000000036 RLG00000000037 RLG00000000059 RLG00000000060 RLG00000000094 RLG00000000095 RLG00000000101 RLG00000000102 RLG00000000181 RLG00000000182 RLG00000000214 RLG00000000215 RLG00000000239 RLG00000000254 RLG00000000255 RLG00000000301 RLG00000000305 RLG00000000306 RLG00000016742 RLG00000029142 RLG00000037092 RLG00000037093 RLG00000037098 RLG00000037099 RLG00000037112
rosa_rugosa	RorugMtG0003000.1 RorugMtG0003400.1
rosa_samantha	Rh1BG209600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AccII	CGCG	1 cut(s)	541
AccIII	TCCGGA	3 cut(s)	649, 1423, 1966
AciI	CCGC	5 cut(s)	541, 842, 973, 1007, 1978
AclI	AACGTT	1 cut(s)	142
AcsI	RAATTY	6 cut(s)	64, 95, 168, 346, 757, 1439
AfaI	GTAC	3 cut(s)	249, 484, 1098
AfiI	CCNNNNNNNGG	3 cut(s)	703, 1783, 1978
AflIII	ACRYGT	1 cut(s)	1794
AhdI	GACNNNNNGTC	1 cut(s)	1489
AjnI	CCWGG	3 cut(s)	23, 465, 1583
AjuI	GAANNNNNNNTTGG	4 cut(s)	369, 401, 1428, 1460
AluBI	AGCT	4 cut(s)	459, 589, 769, 869
AluI	AGCT	4 cut(s)	459, 589, 769, 869
Alw21I	GWGCWC	1 cut(s)	952
Alw26I	GTCTC	1 cut(s)	1654
Ama87I	CYCGRG	1 cut(s)	919
Aor13HI	TCCGGA	3 cut(s)	649, 1423, 1966
ApoI	RAATTY	6 cut(s)	64, 95, 168, 346, 757, 1439
Asp700I	GAANNNNTTC	1 cut(s)	1440
AspS9I	GGNCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
AsuC2I	CCSGG	2 cut(s)	1378, 1677
AsuII	TTCGAA	3 cut(s)	33, 774, 1511
AvaI	CYCGRG	1 cut(s)	919
AvaII	GGWCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
BamHI	GGATCC	4 cut(s)	469, 1178, 1294, 1873
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	952
BccI	CCATC	4 cut(s)	141, 289, 918, 1482
BciT130I	CCWGG	3 cut(s)	25, 467, 1585
BciVI	GTATCC	2 cut(s)	188, 1784
BclI	TGATCA	2 cut(s)	1186, 1245
BcnI	CCSGG	2 cut(s)	1378, 1677
BcoDI	GTCTC	1 cut(s)	1654
BfaI	CTAG	3 cut(s)	579, 1164, 1533
BfuI	GTATCC	2 cut(s)	188, 1784
BglII	AGATCT	5 cut(s)	447, 618, 979, 1136, 1843
BmcAI	AGTACT	2 cut(s)	249, 484
Bme1390I	CCNGG	5 cut(s)	25, 467, 1378, 1585, 1677
Bme18I	GGWCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
BmeRI	GACNNNNNGTC	1 cut(s)	1489
BmeT110I	CYCGRG	1 cut(s)	919
BmgT120I	GGNCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
BmiI	GGNNCC	7 cut(s)	358, 471, 1180, 1296, 1692, 1875, 1965
BmrFI	CCNGG	5 cut(s)	25, 467, 1378, 1585, 1677
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	2 cut(s)	19, 1423
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	384
Bpu14I	TTCGAA	3 cut(s)	33, 774, 1511
BpuMI	CCSGG	2 cut(s)	1378, 1677
Bsa29I	ATCGAT	2 cut(s)	223, 1283
BsaAI	YACGTR	1 cut(s)	1632
BsaJI	CCNNGG	1 cut(s)	728
BsaWI	WCCGGW	4 cut(s)	649, 1423, 1776, 1966
Bsc4I	CCNNNNNNNGG	3 cut(s)	703, 1783, 1978
Bse1I	ACTGG	4 cut(s)	536, 560, 797, 1710
BseAI	TCCGGA	3 cut(s)	649, 1423, 1966
BseBI	CCWGG	3 cut(s)	25, 467, 1585
BseCI	ATCGAT	2 cut(s)	223, 1283
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	4 cut(s)	682, 1657, 1685, 1705
BseLI	CCNNNNNNNGG	3 cut(s)	703, 1783, 1978
BseMII	CTCAG	2 cut(s)	444, 1512
BseNI	ACTGG	4 cut(s)	536, 560, 797, 1710
BseYI	CCCAGC	1 cut(s)	869
Bsh1236I	CGCG	1 cut(s)	541
Bsh1285I	CGRYCG	1 cut(s)	1592
BshVI	ATCGAT	2 cut(s)	223, 1283
BsiEI	CGRYCG	1 cut(s)	1592
BsiHKAI	GWGCWC	1 cut(s)	952
BsiHKCI	CYCGRG	1 cut(s)	919
BsiSI	CCGG	7 cut(s)	650, 1378, 1424, 1676, 1777, 1871, 1967
BslFI	GGGAC	3 cut(s)	777, 1360, 1562
BslI	CCNNNNNNNGG	3 cut(s)	703, 1783, 1978
BsmAI	GTCTC	1 cut(s)	1654
BsmBI	CGTCTC	1 cut(s)	1654
BsmFI	GGGAC	3 cut(s)	777, 1360, 1562
BsoBI	CYCGRG	1 cut(s)	919
Bsp119I	TTCGAA	3 cut(s)	33, 774, 1511
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp13I	TCCGGA	3 cut(s)	649, 1423, 1966
BspACI	CCGC	5 cut(s)	541, 842, 973, 1007, 1978
BspCNI	CTCAG	2 cut(s)	445, 1513
BspDI	ATCGAT	2 cut(s)	223, 1283
BspEI	TCCGGA	3 cut(s)	649, 1423, 1966
BspFNI	CGCG	1 cut(s)	541
BspLI	GGNNCC	7 cut(s)	358, 471, 1180, 1296, 1692, 1875, 1965
BspT104I	TTCGAA	3 cut(s)	33, 774, 1511
BsrI	ACTGG	4 cut(s)	536, 560, 797, 1710
BssECI	CCNNGG	1 cut(s)	728
Bst2UI	CCWGG	3 cut(s)	25, 467, 1585
Bst4CI	ACNGT	3 cut(s)	373, 1648, 1712
Bst6I	CTCTTC	4 cut(s)	728, 920, 989, 1815
BstBAI	YACGTR	1 cut(s)	1632
BstBI	TTCGAA	3 cut(s)	33, 774, 1511
BstDEI	CTNAG	4 cut(s)	79, 453, 781, 1521
BstF5I	GGATG	4 cut(s)	682, 1657, 1685, 1705
BstFNI	CGCG	1 cut(s)	541
BstMAI	GTCTC	1 cut(s)	1654
BstMCI	CGRYCG	1 cut(s)	1592
BstNI	CCWGG	3 cut(s)	25, 467, 1585
BstNSI	RCATGY	1 cut(s)	905
BstSCI	CCNGG	5 cut(s)	23, 465, 1376, 1583, 1675
BstSNI	TACGTA	1 cut(s)	1632
BstUI	CGCG	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	384
Bsu15I	ATCGAT	2 cut(s)	223, 1283
BsuI	GTATCC	2 cut(s)	188, 1784
BsuTUI	ATCGAT	2 cut(s)	223, 1283
BtsCI	GGATG	4 cut(s)	682, 1657, 1685, 1705
BtsIMutI	CAGTG	2 cut(s)	111, 378
Cfr13I	GGNCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
ClaI	ATCGAT	2 cut(s)	223, 1283
Csp6I	GTAC	3 cut(s)	248, 483, 1097
CviAII	CATG	6 cut(s)	87, 517, 698, 808, 902, 1772
CviJI	RGCY	9 cut(s)	328, 459, 589, 769, 869, 935, 1167, 1381, 1870
CviKI_1	RGCY	9 cut(s)	328, 459, 589, 769, 869, 935, 1167, 1381, 1870
CviQI	GTAC	3 cut(s)	248, 483, 1097
DdeI	CTNAG	4 cut(s)	79, 453, 781, 1521
DriI	GACNNNNNGTC	1 cut(s)	1489
Eam1104I	CTCTTC	4 cut(s)	728, 920, 989, 1815
Eam1105I	GACNNNNNGTC	1 cut(s)	1489
EarI	CTCTTC	4 cut(s)	728, 920, 989, 1815
EciI	GGCGGA	1 cut(s)	962
Eco105I	TACGTA	1 cut(s)	1632
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
Eco88I	CYCGRG	1 cut(s)	919
EcoRI	GAATTC	2 cut(s)	64, 757
EcoRII	CCWGG	3 cut(s)	23, 465, 1583
EcoRV	GATATC	1 cut(s)	640
Esp3I	CGTCTC	1 cut(s)	1654
FaeI	CATG	6 cut(s)	90, 520, 701, 811, 905, 1775
FalI	AAGNNNNNCTT	2 cut(s)	1428, 1460
FaqI	GGGAC	3 cut(s)	777, 1360, 1562
FatI	CATG	6 cut(s)	86, 516, 697, 807, 901, 1771
FauI	CCCGC	1 cut(s)	1971
FauNDI	CATATG	1 cut(s)	960
FbaI	TGATCA	2 cut(s)	1186, 1245
FokI	GGATG	4 cut(s)	689, 1644, 1692, 1712
FspBI	CTAG	3 cut(s)	579, 1164, 1533
GsaI	CCCAGC	1 cut(s)	873
HapII	CCGG	7 cut(s)	650, 1378, 1424, 1676, 1777, 1871, 1967
Hin1II	CATG	6 cut(s)	90, 520, 701, 811, 905, 1775
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HpaII	CCGG	7 cut(s)	650, 1378, 1424, 1676, 1777, 1871, 1967
Hpy166II	GTNNAC	3 cut(s)	876, 1072, 1530
Hpy8I	GTNNAC	3 cut(s)	876, 1072, 1530
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	3 cut(s)	1308, 1475, 1590
HpyCH4III	ACNGT	3 cut(s)	373, 1648, 1712
HpyCH4IV	ACGT	4 cut(s)	142, 1393, 1631, 1796
HpyCH4V	TGCA	1 cut(s)	940
HpyF3I	CTNAG	4 cut(s)	79, 453, 781, 1521
HpySE526I	ACGT	4 cut(s)	142, 1393, 1631, 1796
Hsp92II	CATG	6 cut(s)	90, 520, 701, 811, 905, 1775
Kpn2I	TCCGGA	3 cut(s)	649, 1423, 1966
Ksp22I	TGATCA	2 cut(s)	1186, 1245
LmnI	GCTCC	2 cut(s)	426, 866
LweI	GCATC	2 cut(s)	19, 1423
MaeI	CTAG	3 cut(s)	579, 1164, 1533
MaeII	ACGT	4 cut(s)	142, 1393, 1631, 1796
MaeIII	GTNAC	2 cut(s)	1153, 1797
MfeI	CAATTG	2 cut(s)	834, 1169
MhlI	GDGCHC	1 cut(s)	952
MroI	TCCGGA	3 cut(s)	649, 1423, 1966
MroXI	GAANNNNTTC	1 cut(s)	1440
MseI	TTAA	2 cut(s)	282, 1611
MspI	CCGG	7 cut(s)	650, 1378, 1424, 1676, 1777, 1871, 1967
MspR9I	CCNGG	5 cut(s)	25, 467, 1378, 1585, 1677
MunI	CAATTG	2 cut(s)	834, 1169
MvaI	CCWGG	3 cut(s)	25, 467, 1585
MvnI	CGCG	1 cut(s)	541
NciI	CCSGG	2 cut(s)	1378, 1677
NdeI	CATATG	1 cut(s)	960
NlaIII	CATG	6 cut(s)	90, 520, 701, 811, 905, 1775
NlaIV	GGNNCC	7 cut(s)	358, 471, 1180, 1296, 1692, 1875, 1965
NspI	RCATGY	1 cut(s)	905
NspV	TTCGAA	3 cut(s)	33, 774, 1511
PaeR7I	CTCGAG	1 cut(s)	919
PdmI	GAANNNNTTC	1 cut(s)	1440
PfoI	TCCNGGA	3 cut(s)	23, 465, 1675
Ple19I	CGATCG	1 cut(s)	1592
Ppu21I	YACGTR	1 cut(s)	1632
PsiI	TTATAA	1 cut(s)	149
Psp1406I	AACGTT	1 cut(s)	142
Psp6I	CCWGG	3 cut(s)	23, 465, 1583
PspFI	CCCAGC	1 cut(s)	869
PspGI	CCWGG	3 cut(s)	23, 465, 1583
PspN4I	GGNNCC	7 cut(s)	358, 471, 1180, 1296, 1692, 1875, 1965
PspPI	GGNCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
PvuI	CGATCG	1 cut(s)	1592
RsaI	GTAC	3 cut(s)	249, 484, 1098
RsaNI	GTAC	3 cut(s)	248, 483, 1097
SaqAI	TTAA	2 cut(s)	282, 1611
Sau96I	GGNCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
ScaI	AGTACT	2 cut(s)	249, 484
ScrFI	CCNGG	5 cut(s)	25, 467, 1378, 1585, 1677
SduI	GDGCHC	1 cut(s)	952
SfaNI	GCATC	2 cut(s)	19, 1423
Sfr274I	CTCGAG	1 cut(s)	919
SfuI	TTCGAA	3 cut(s)	33, 774, 1511
SinI	GGWCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
SlaI	CTCGAG	1 cut(s)	919
SmlI	CTYRAG	1 cut(s)	919
SmoI	CTYRAG	1 cut(s)	919
SnaBI	TACGTA	1 cut(s)	1632
SsiI	CCGC	5 cut(s)	541, 842, 973, 1007, 1978
SspI	AATATT	1 cut(s)	1117
SspMI	CTAG	3 cut(s)	579, 1164, 1533
StyD4I	CCNGG	5 cut(s)	23, 465, 1376, 1583, 1675
TaaI	ACNGT	3 cut(s)	373, 1648, 1712
TaiI	ACGT	4 cut(s)	145, 1396, 1634, 1799
TaqII	GACCGA	1 cut(s)	1353
TatI	WGTACW	2 cut(s)	247, 482
Tru1I	TTAA	2 cut(s)	282, 1611
Tru9I	TTAA	2 cut(s)	282, 1611
TscAI	CASTG	2 cut(s)	111, 378
TspGWI	ACGGA	6 cut(s)	1114, 1172, 1328, 1403, 1866, 1932
TspRI	CASTG	2 cut(s)	111, 378
VpaK11BI	GGWCC	7 cut(s)	90, 265, 356, 694, 1527, 1964, 1969
XapI	RAATTY	6 cut(s)	64, 95, 168, 346, 757, 1439
XceI	RCATGY	1 cut(s)	905
XhoI	CTCGAG	1 cut(s)	919
XmnI	GAANNNNTTC	1 cut(s)	1440
XspI	CTAG	3 cut(s)	579, 1164, 1533
ZrmI	AGTACT	2 cut(s)	249, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.