function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00860 ATCG01280 |
| fragaria_vesca | FvH4_c3g00160 |
| malus_domestica | MD15G1364000.v1.1 MD15G1364100.v1.1 MD15G1364300.v1.1 |
| pyrus_communis | pycom11g21060 pycom12397g00050 pycom12397g00150 pycom13g12670 pycom13g17800 pycom1682g00010 pycom3137g00010 pycom3137g00020 |
| rosa_chinensis | RchiOBHm_Chr2g0118461 RchiOBHm_Chr2g0118471 |
| rosa_laevigata | RLG00000000001 RLG00000000007 RLG00000000030 RLG00000000031 RLG00000000036 RLG00000000037 RLG00000000059 RLG00000000060 RLG00000000094 RLG00000000095 RLG00000000101 RLG00000000102 RLG00000000181 RLG00000000182 RLG00000000214 RLG00000000215 RLG00000000239 RLG00000000254 RLG00000000255 RLG00000000301 RLG00000000305 RLG00000000306 RLG00000016742 RLG00000029142 RLG00000037092 RLG00000037093 RLG00000037098 RLG00000037099 RLG00000037112 |
| rosa_rugosa | RorugMtG0003000.1 RorugMtG0003400.1 |
| rosa_samantha | Rh1BG209600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 852 |
| Acc36I | ACCTGC | 1 cut(s) | 2610 |
| AccB1I | GGYRCC | 1 cut(s) | 2658 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1265 |
| AccBSI | CCGCTC | 1 cut(s) | 1769 |
| AciI | CCGC | 9 cut(s) | 121, 684, 693, 720, 1186, 1767, 2743, 2876, 2906 |
| AcoI | YGGCCR | 1 cut(s) | 1480 |
| AcsI | RAATTY | 6 cut(s) | 215, 267, 607, 977, 1026, 2936 |
| AcuI | CTGAAG | 1 cut(s) | 257 |
| AcyI | GRCGYC | 1 cut(s) | 2659 |
| AfaI | GTAC | 6 cut(s) | 475, 1935, 2124, 2204, 2213, 2807 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 111, 725, 726, 1236, 1265, 1305, 1306, 1495, 2487 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2299 |
| AjnI | CCWGG | 2 cut(s) | 1413, 1691 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 2973, 3005, 3219 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 453, 485, 1673, 1705 |
| AluBI | AGCT | 4 cut(s) | 1501, 1507, 1778, 3151 |
| AluI | AGCT | 4 cut(s) | 1501, 1507, 1778, 3151 |
| Alw26I | GTCTC | 4 cut(s) | 838, 946, 1605, 2307 |
| Ama87I | CYCGRG | 1 cut(s) | 495 |
| AoxI | GGCC | 6 cut(s) | 1480, 1962, 2106, 2377, 2477, 2693 |
| ApeKI | GCWGC | 1 cut(s) | 207 |
| ApoI | RAATTY | 6 cut(s) | 215, 267, 607, 977, 1026, 2936 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1583, 1615 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 360, 611, 1409, 1889 |
| AspLEI | GCGC | 3 cut(s) | 1528, 2405, 2661 |
| AspS9I | GGNCC | 8 cut(s) | 716, 1911, 1963, 2106, 2312, 2478, 2694, 2869 |
| AsuC2I | CCSGG | 4 cut(s) | 1098, 2310, 2422, 3221 |
| AsuHPI | GGTGA | 4 cut(s) | 372, 920, 974, 1561 |
| AsuII | TTCGAA | 5 cut(s) | 525, 1581, 2217, 2848, 3045 |
| AvaI | CYCGRG | 1 cut(s) | 495 |
| AvaII | GGWCC | 4 cut(s) | 716, 1911, 2312, 2869 |
| BamHI | GGATCC | 4 cut(s) | 1762, 2082, 2414, 2878 |
| BanI | GGYRCC | 1 cut(s) | 2658 |
| BanII | GRGCYC | 1 cut(s) | 2647 |
| BauI | CACGAG | 1 cut(s) | 2814 |
| BbsI | GAAGAC | 1 cut(s) | 281 |
| BbvI | GCAGC | 1 cut(s) | 219 |
| BccI | CCATC | 9 cut(s) | 109, 559, 604, 821, 1267, 2759, 3063, 3130, 3204 |
| BceAI | ACGGC | 2 cut(s) | 1467, 2093 |
| BciT130I | CCWGG | 2 cut(s) | 1415, 1693 |
| BciVI | GTATCC | 1 cut(s) | 600 |
| BclI | TGATCA | 3 cut(s) | 1021, 1051, 2533 |
| BcnI | CCSGG | 4 cut(s) | 1098, 2310, 2422, 3221 |
| BcoDI | GTCTC | 4 cut(s) | 838, 946, 1605, 2307 |
| BfaI | CTAG | 8 cut(s) | 635, 665, 1305, 1364, 1716, 1863, 2369, 2649 |
| BfmI | CTRYAG | 2 cut(s) | 502, 1329 |
| BfoI | RGCGCY | 2 cut(s) | 2406, 2662 |
| BfuAI | ACCTGC | 1 cut(s) | 2610 |
| BfuI | GTATCC | 1 cut(s) | 600 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 2667, 2965 |
| BglII | AGATCT | 5 cut(s) | 870, 1939, 2018, 2822, 2986 |
| BisI | GCNGC | 2 cut(s) | 208, 694 |
| BlsI | GCNGC | 2 cut(s) | 209, 695 |
| Bme1390I | CCNGG | 6 cut(s) | 1098, 1415, 1693, 2310, 2422, 3221 |
| Bme18I | GGWCC | 4 cut(s) | 716, 1911, 2312, 2869 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2299 |
| BmeT110I | CYCGRG | 1 cut(s) | 495 |
| BmgT120I | GGNCC | 8 cut(s) | 716, 1911, 1963, 2106, 2312, 2478, 2694, 2869 |
| BmrFI | CCNGG | 6 cut(s) | 1098, 1415, 1693, 2310, 2422, 3221 |
| BmsI | GCATC | 4 cut(s) | 43, 1533, 2496, 2946 |
| BpiI | GAAGAC | 1 cut(s) | 281 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1027, 1059 |
| BpmI | CTGGAG | 2 cut(s) | 1523, 1675 |
| Bpu14I | TTCGAA | 5 cut(s) | 525, 1581, 2217, 2848, 3045 |
| BpuEI | CTTGAG | 1 cut(s) | 2274 |
| BpuMI | CCSGG | 4 cut(s) | 1098, 2310, 2422, 3221 |
| Bsa29I | ATCGAT | 3 cut(s) | 777, 786, 1970 |
| BsaBI | GATNNNNATC | 3 cut(s) | 588, 2364, 2454 |
| BsaHI | GRCGYC | 1 cut(s) | 2659 |
| BsaI | GGTCTC | 2 cut(s) | 946, 2307 |
| BsaJI | CCNNGG | 6 cut(s) | 1428, 1666, 1692, 1920, 2486, 2663 |
| BsaWI | WCCGGW | 1 cut(s) | 2407 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1673, 1703, 2577, 2607 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 111, 725, 726, 1236, 1265, 1305, 1306, 1495, 2487 |
| Bse1I | ACTGG | 1 cut(s) | 1342 |
| Bse3DI | GCAATG | 2 cut(s) | 1602, 2465 |
| Bse8I | GATNNNNATC | 3 cut(s) | 588, 2364, 2454 |
| BseBI | CCWGG | 2 cut(s) | 1415, 1693 |
| BseCI | ATCGAT | 3 cut(s) | 777, 786, 1970 |
| BseDI | CCNNGG | 6 cut(s) | 1428, 1666, 1692, 1920, 2486, 2663 |
| BseGI | GGATG | 6 cut(s) | 101, 1166, 1645, 2770, 3122, 3229 |
| BseJI | GATNNNNATC | 3 cut(s) | 588, 2364, 2454 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 111, 725, 726, 1236, 1265, 1305, 1306, 1495, 2487 |
| BseMI | GCAATG | 2 cut(s) | 1602, 2465 |
| BseMII | CTCAG | 2 cut(s) | 78, 392 |
| BseNI | ACTGG | 1 cut(s) | 1342 |
| BseRI | GAGGAG | 1 cut(s) | 2630 |
| BseX3I | CGGCCG | 1 cut(s) | 1480 |
| BseXI | GCAGC | 1 cut(s) | 219 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1483, 2286 |
| BshFI | GGCC | 6 cut(s) | 1482, 1964, 2108, 2379, 2479, 2695 |
| BshNI | GGYRCC | 1 cut(s) | 2658 |
| BshVI | ATCGAT | 3 cut(s) | 777, 786, 1970 |
| BsiEI | CGRYCG | 2 cut(s) | 1483, 2286 |
| BsiHKCI | CYCGRG | 1 cut(s) | 495 |
| BsiSI | CCGG | 7 cut(s) | 1097, 1547, 2277, 2310, 2408, 2422, 3221 |
| BslFI | GGGAC | 2 cut(s) | 702, 2882 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 111, 725, 726, 1236, 1265, 1305, 1306, 1495, 2487 |
| BsmAI | GTCTC | 4 cut(s) | 838, 946, 1605, 2307 |
| BsmFI | GGGAC | 2 cut(s) | 702, 2882 |
| BsmI | GAATGC | 1 cut(s) | 1528 |
| BsnI | GGCC | 6 cut(s) | 1482, 1964, 2108, 2379, 2479, 2695 |
| Bso31I | GGTCTC | 2 cut(s) | 946, 2307 |
| BsoBI | CYCGRG | 1 cut(s) | 495 |
| Bsp119I | TTCGAA | 5 cut(s) | 525, 1581, 2217, 2848, 3045 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2647 |
| Bsp1407I | TGTACA | 1 cut(s) | 2202 |
| Bsp19I | CCATGG | 1 cut(s) | 1920 |
| BspACI | CCGC | 9 cut(s) | 121, 684, 693, 720, 1186, 1767, 2743, 2876, 2906 |
| BspANI | GGCC | 6 cut(s) | 1482, 1964, 2108, 2379, 2479, 2695 |
| BspCNI | CTCAG | 2 cut(s) | 79, 393 |
| BspDI | ATCGAT | 3 cut(s) | 777, 786, 1970 |
| BspHI | TCATGA | 2 cut(s) | 232, 1630 |
| BspMI | ACCTGC | 1 cut(s) | 2610 |
| BspQI | GCTCTTC | 1 cut(s) | 2031 |
| BspT104I | TTCGAA | 5 cut(s) | 525, 1581, 2217, 2848, 3045 |
| BspT107I | GGYRCC | 1 cut(s) | 2658 |
| BspTNI | GGTCTC | 2 cut(s) | 946, 2307 |
| BsrBI | CCGCTC | 1 cut(s) | 1769 |
| BsrDI | GCAATG | 2 cut(s) | 1602, 2465 |
| BsrGI | TGTACA | 1 cut(s) | 2202 |
| BsrI | ACTGG | 1 cut(s) | 1342 |
| BssECI | CCNNGG | 6 cut(s) | 1428, 1666, 1692, 1920, 2486, 2663 |
| BssNI | GRCGYC | 1 cut(s) | 2659 |
| BssSI | CACGAG | 1 cut(s) | 2814 |
| BssT1I | CCWWGG | 4 cut(s) | 1428, 1920, 2486, 2663 |
| Bst2BI | CACGAG | 1 cut(s) | 2814 |
| Bst2UI | CCWGG | 2 cut(s) | 1415, 1693 |
| Bst4CI | ACNGT | 4 cut(s) | 908, 950, 1396, 3086 |
| Bst6I | CTCTTC | 2 cut(s) | 2031, 2946 |
| BstACI | GRCGYC | 1 cut(s) | 2659 |
| BstAUI | TGTACA | 1 cut(s) | 2202 |
| BstBI | TTCGAA | 5 cut(s) | 525, 1581, 2217, 2848, 3045 |
| BstC8I | GCNNGC | 1 cut(s) | 2741 |
| BstDEI | CTNAG | 9 cut(s) | 87, 200, 401, 747, 851, 1120, 2129, 2497, 3074 |
| BstDSI | CCRYGG | 1 cut(s) | 1920 |
| BstF5I | GGATG | 6 cut(s) | 101, 1166, 1645, 2770, 3122, 3229 |
| BstH2I | RGCGCY | 2 cut(s) | 2406, 2662 |
| BstHHI | GCGC | 3 cut(s) | 1528, 2405, 2661 |
| BstMAI | GTCTC | 4 cut(s) | 838, 946, 1605, 2307 |
| BstMCI | CGRYCG | 2 cut(s) | 1483, 2286 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1775, 2476, 2667, 2965, 3037 |
| BstNI | CCWGG | 2 cut(s) | 1415, 1693 |
| BstNSI | RCATGY | 2 cut(s) | 703, 1800 |
| BstSCI | CCNGG | 6 cut(s) | 1096, 1413, 1691, 2308, 2420, 3219 |
| BstSFI | CTRYAG | 2 cut(s) | 502, 1329 |
| BstV1I | GCAGC | 1 cut(s) | 219 |
| BstV2I | GAAGAC | 1 cut(s) | 281 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1759, 1921, 2704 |
| BstZI | CGGCCG | 1 cut(s) | 1480 |
| Bsu15I | ATCGAT | 3 cut(s) | 777, 786, 1970 |
| BsuI | GTATCC | 1 cut(s) | 600 |
| BsuRI | GGCC | 6 cut(s) | 1482, 1964, 2108, 2379, 2479, 2695 |
| BsuTUI | ATCGAT | 3 cut(s) | 777, 786, 1970 |
| BtgI | CCRYGG | 1 cut(s) | 1920 |
| BtgZI | GCGATG | 1 cut(s) | 3044 |
| BtsCI | GGATG | 6 cut(s) | 101, 1166, 1645, 2770, 3122, 3229 |
| BtsIMutI | CAGTG | 1 cut(s) | 955 |
| BveI | ACCTGC | 1 cut(s) | 2610 |
| Cac8I | GCNNGC | 1 cut(s) | 2741 |
| CciI | TCATGA | 2 cut(s) | 232, 1630 |
| CfoI | GCGC | 3 cut(s) | 1528, 2405, 2661 |
| Cfr13I | GGNCC | 8 cut(s) | 716, 1911, 1963, 2106, 2312, 2478, 2694, 2869 |
| ClaI | ATCGAT | 3 cut(s) | 777, 786, 1970 |
| Csp6I | GTAC | 6 cut(s) | 474, 1934, 2123, 2203, 2212, 2806 |
| CviQI | GTAC | 6 cut(s) | 474, 1934, 2123, 2203, 2212, 2806 |
| DdeI | CTNAG | 9 cut(s) | 87, 200, 401, 747, 851, 1120, 2129, 2497, 3074 |
| DinI | GGCGCC | 1 cut(s) | 2660 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 852 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2299 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 852 |
| EaeI | YGGCCR | 1 cut(s) | 1480 |
| EagI | CGGCCG | 1 cut(s) | 1480 |
| Eam1104I | CTCTTC | 2 cut(s) | 2031, 2946 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2299 |
| EarI | CTCTTC | 2 cut(s) | 2031, 2946 |
| EciI | GGCGGA | 2 cut(s) | 1201, 2895 |
| EclXI | CGGCCG | 1 cut(s) | 1480 |
| Eco130I | CCWWGG | 4 cut(s) | 1428, 1920, 2486, 2663 |
| Eco24I | GRGCYC | 1 cut(s) | 2647 |
| Eco31I | GGTCTC | 2 cut(s) | 946, 2307 |
| Eco32I | GATATC | 4 cut(s) | 390, 464, 781, 1477 |
| Eco47I | GGWCC | 4 cut(s) | 716, 1911, 2312, 2869 |
| Eco52I | CGGCCG | 1 cut(s) | 1480 |
| Eco57I | CTGAAG | 1 cut(s) | 257 |
| Eco88I | CYCGRG | 1 cut(s) | 495 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1963, 2869 |
| EcoRI | GAATTC | 4 cut(s) | 267, 607, 977, 2936 |
| EcoRII | CCWGG | 2 cut(s) | 1413, 1691 |
| EcoRV | GATATC | 4 cut(s) | 390, 464, 781, 1477 |
| EcoT14I | CCWWGG | 4 cut(s) | 1428, 1920, 2486, 2663 |
| EcoT22I | ATGCAT | 2 cut(s) | 254, 1802 |
| EcoT38I | GRGCYC | 1 cut(s) | 2647 |
| EgeI | GGCGCC | 1 cut(s) | 2660 |
| EheI | GGCGCC | 1 cut(s) | 2660 |
| ErhI | CCWWGG | 4 cut(s) | 1428, 1920, 2486, 2663 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 128, 160, 614, 646 |
| FaqI | GGGAC | 2 cut(s) | 702, 2882 |
| FauI | CCCGC | 3 cut(s) | 114, 727, 1774 |
| FbaI | TGATCA | 3 cut(s) | 1021, 1051, 2533 |
| Fnu4HI | GCNGC | 2 cut(s) | 208, 694 |
| FokI | GGATG | 6 cut(s) | 88, 1153, 1652, 2777, 3109, 3236 |
| FriOI | GRGCYC | 1 cut(s) | 2647 |
| Fsp4HI | GCNGC | 2 cut(s) | 208, 694 |
| FspBI | CTAG | 8 cut(s) | 635, 665, 1305, 1364, 1716, 1863, 2369, 2649 |
| GlaI | GCGC | 3 cut(s) | 1527, 2404, 2660 |
| GluI | GCNGC | 2 cut(s) | 208, 694 |
| GsuI | CTGGAG | 2 cut(s) | 1523, 1675 |
| HaeII | RGCGCY | 2 cut(s) | 2406, 2662 |
| HaeIII | GGCC | 6 cut(s) | 1482, 1964, 2108, 2379, 2479, 2695 |
| HapII | CCGG | 7 cut(s) | 1097, 1547, 2277, 2310, 2408, 2422, 3221 |
| HhaI | GCGC | 3 cut(s) | 1528, 2405, 2661 |
| Hin1I | GRCGYC | 1 cut(s) | 2659 |
| Hin6I | GCGC | 3 cut(s) | 1526, 2403, 2659 |
| HinP1I | GCGC | 3 cut(s) | 1526, 2403, 2659 |
| HincII | GTYRAC | 1 cut(s) | 1126 |
| HindII | GTYRAC | 1 cut(s) | 1126 |
| HpaII | CCGG | 7 cut(s) | 1097, 1547, 2277, 2310, 2408, 2422, 3221 |
| HphI | GGTGA | 4 cut(s) | 372, 920, 974, 1561 |
| Hpy166II | GTNNAC | 5 cut(s) | 332, 476, 904, 1126, 1681 |
| Hpy8I | GTNNAC | 5 cut(s) | 332, 476, 904, 1126, 1681 |
| Hpy99I | CGWCG | 1 cut(s) | 356 |
| HpyCH4III | ACNGT | 4 cut(s) | 908, 950, 1396, 3086 |
| HpyCH4IV | ACGT | 2 cut(s) | 742, 900 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1775, 2476, 2667, 2965, 3037 |
| HpyF3I | CTNAG | 9 cut(s) | 87, 200, 401, 747, 851, 1120, 2129, 2497, 3074 |
| HpySE526I | ACGT | 2 cut(s) | 742, 900 |
| Hsp92I | GRCGYC | 1 cut(s) | 2659 |
| HspAI | GCGC | 3 cut(s) | 1526, 2403, 2659 |
| KasI | GGCGCC | 1 cut(s) | 2658 |
| KflI | GGGWCCC | 1 cut(s) | 2869 |
| Ksp22I | TGATCA | 3 cut(s) | 1021, 1051, 2533 |
| LguI | GCTCTTC | 1 cut(s) | 2031 |
| LmnI | GCTCC | 8 cut(s) | 1100, 1287, 1498, 1504, 1783, 2144, 2410, 2650 |
| Lsp1109I | GCAGC | 1 cut(s) | 219 |
| LweI | GCATC | 4 cut(s) | 43, 1533, 2496, 2946 |
| MaeI | CTAG | 8 cut(s) | 635, 665, 1305, 1364, 1716, 1863, 2369, 2649 |
| MaeII | ACGT | 2 cut(s) | 742, 900 |
| MaeIII | GTNAC | 7 cut(s) | 378, 510, 1451, 1469, 1484, 2180, 2461 |
| MbiI | CCGCTC | 1 cut(s) | 1769 |
| MhlI | GDGCHC | 1 cut(s) | 2647 |
| Mly113I | GGCGCC | 1 cut(s) | 2659 |
| MlyI | GAGTC | 9 cut(s) | 386, 1036, 1045, 1064, 1658, 1735, 2340, 2601, 2809 |
| MmeI | TCCRAC | 1 cut(s) | 375 |
| Mph1103I | ATGCAT | 2 cut(s) | 254, 1802 |
| MroXI | GAANNNNTTC | 4 cut(s) | 360, 611, 1409, 1889 |
| MseI | TTAA | 5 cut(s) | 620, 1001, 1790, 1803, 2243 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1919 |
| MspI | CCGG | 7 cut(s) | 1097, 1547, 2277, 2310, 2408, 2422, 3221 |
| MspR9I | CCNGG | 6 cut(s) | 1098, 1415, 1693, 2310, 2422, 3221 |
| Mva1269I | GAATGC | 1 cut(s) | 1528 |
| MvaI | CCWGG | 2 cut(s) | 1415, 1693 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1775, 2476, 2667, 2965, 3037 |
| NarI | GGCGCC | 1 cut(s) | 2659 |
| NciI | CCSGG | 4 cut(s) | 1098, 2310, 2422, 3221 |
| NcoI | CCATGG | 1 cut(s) | 1920 |
| NmuCI | GTSAC | 5 cut(s) | 378, 1451, 1469, 1484, 2461 |
| NsiI | ATGCAT | 2 cut(s) | 254, 1802 |
| NspI | RCATGY | 2 cut(s) | 703, 1800 |
| NspV | TTCGAA | 5 cut(s) | 525, 1581, 2217, 2848, 3045 |
| PaeR7I | CTCGAG | 1 cut(s) | 495 |
| PagI | TCATGA | 2 cut(s) | 232, 1630 |
| PciSI | GCTCTTC | 1 cut(s) | 2031 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 783, 839 |
| PctI | GAATGC | 1 cut(s) | 1528 |
| PdmI | GAANNNNTTC | 4 cut(s) | 360, 611, 1409, 1889 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1265 |
| PfoI | TCCNGGA | 3 cut(s) | 1413, 2420, 3219 |
| PkrI | GCNGC | 2 cut(s) | 209, 695 |
| PleI | GAGTC | 9 cut(s) | 385, 1036, 1044, 1064, 1657, 1735, 2340, 2600, 2808 |
| PluTI | GGCGCC | 1 cut(s) | 2662 |
| PpsI | GAGTC | 9 cut(s) | 385, 1036, 1044, 1064, 1657, 1735, 2340, 2600, 2808 |
| PpuMI | RGGWCCY | 1 cut(s) | 2869 |
| Psp5II | RGGWCCY | 1 cut(s) | 2869 |
| Psp6I | CCWGG | 2 cut(s) | 1413, 1691 |
| PspGI | CCWGG | 2 cut(s) | 1413, 1691 |
| PspPI | GGNCC | 8 cut(s) | 716, 1911, 1963, 2106, 2312, 2478, 2694, 2869 |
| PspPPI | RGGWCCY | 1 cut(s) | 2869 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2052, 2084 |
| RsaI | GTAC | 6 cut(s) | 475, 1935, 2124, 2204, 2213, 2807 |
| RsaNI | GTAC | 6 cut(s) | 474, 1934, 2123, 2203, 2212, 2806 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1919 |
| SapI | GCTCTTC | 1 cut(s) | 2031 |
| SaqAI | TTAA | 5 cut(s) | 620, 1001, 1790, 1803, 2243 |
| SatI | GCNGC | 2 cut(s) | 208, 694 |
| Sau96I | GGNCC | 8 cut(s) | 716, 1911, 1963, 2106, 2312, 2478, 2694, 2869 |
| SchI | GAGTC | 9 cut(s) | 386, 1036, 1045, 1064, 1658, 1735, 2340, 2601, 2809 |
| ScrFI | CCNGG | 6 cut(s) | 1098, 1415, 1693, 2310, 2422, 3221 |
| SduI | GDGCHC | 1 cut(s) | 2647 |
| SfaNI | GCATC | 4 cut(s) | 43, 1533, 2496, 2946 |
| SfcI | CTRYAG | 2 cut(s) | 502, 1329 |
| SfoI | GGCGCC | 1 cut(s) | 2660 |
| Sfr274I | CTCGAG | 1 cut(s) | 495 |
| SfuI | TTCGAA | 5 cut(s) | 525, 1581, 2217, 2848, 3045 |
| SinI | GGWCC | 4 cut(s) | 716, 1911, 2312, 2869 |
| SlaI | CTCGAG | 1 cut(s) | 495 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1919 |
| SmlI | CTYRAG | 2 cut(s) | 495, 2289 |
| SmoI | CTYRAG | 2 cut(s) | 495, 2289 |
| SsiI | CCGC | 9 cut(s) | 121, 684, 693, 720, 1186, 1767, 2743, 2876, 2906 |
| SspDI | GGCGCC | 1 cut(s) | 2658 |
| SspI | AATATT | 3 cut(s) | 95, 758, 1723 |
| SspMI | CTAG | 8 cut(s) | 635, 665, 1305, 1364, 1716, 1863, 2369, 2649 |
| StyD4I | CCNGG | 6 cut(s) | 1096, 1413, 1691, 2308, 2420, 3219 |
| StyI | CCWWGG | 4 cut(s) | 1428, 1920, 2486, 2663 |
| TaaI | ACNGT | 4 cut(s) | 908, 950, 1396, 3086 |
| TaiI | ACGT | 2 cut(s) | 745, 903 |
| TaqII | GACCGA | 2 cut(s) | 1572, 2272 |
| TatI | WGTACW | 2 cut(s) | 2122, 2202 |
| TauI | GCSGC | 1 cut(s) | 696 |
| Tru1I | TTAA | 5 cut(s) | 620, 1001, 1790, 1803, 2243 |
| Tru9I | TTAA | 5 cut(s) | 620, 1001, 1790, 1803, 2243 |
| TscAI | CASTG | 1 cut(s) | 955 |
| TseFI | GTSAC | 5 cut(s) | 378, 1451, 1469, 1484, 2461 |
| TseI | GCWGC | 1 cut(s) | 207 |
| Tsp45I | GTSAC | 5 cut(s) | 378, 1451, 1469, 1484, 2461 |
| TspGWI | ACGGA | 4 cut(s) | 1274, 1511, 2623, 3098 |
| TspRI | CASTG | 1 cut(s) | 955 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1265 |
| VpaK11BI | GGWCC | 4 cut(s) | 716, 1911, 2312, 2869 |
| XapI | RAATTY | 6 cut(s) | 215, 267, 607, 977, 1026, 2936 |
| XbaI | TCTAGA | 1 cut(s) | 664 |
| XceI | RCATGY | 2 cut(s) | 703, 1800 |
| XhoI | CTCGAG | 1 cut(s) | 495 |
| XmnI | GAANNNNTTC | 4 cut(s) | 360, 611, 1409, 1889 |
| XspI | CTAG | 8 cut(s) | 635, 665, 1305, 1364, 1716, 1863, 2369, 2649 |
| Zsp2I | ATGCAT | 2 cut(s) | 254, 1802 |