Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001704

Physical Location & Seq

Genomic Coordinates Reverse (-)

30721790 .. 30722470

Gene Structure 681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACCAAATTCAATTCAGTGGGACCTTTCATTCACATTTTTTTTTCCATCAAGAACGTTTTATAAAACTTTTGGACTTCCAAATTTGGAGTATCCTATTTTCACGCAATTCACATTTACAGGGTTCAACAAGCAATCGATATTTCACAATCAAGGGTGTAGTACTATTTGTAGTAGTGGTCCTTATATATCGTATTAACAATCGAAAGATGGTCGAGAGAAAAAATCTCTATTTGACAGGGCTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATACTGTGGAAGAATCTTTTGGGTCTTCCAATATCAATAGGTTGATTGTTTCGCTCTTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCTAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTGGTGGAGGAACTGGATCGGAAGAAAGAGGGATTCTAGTTGTAAGCTATCTAATGAAACCGTCACTGGAATTGAGATCTCATTCAAAGAGAAAGATATCAAATATCCGGAGTTTCTTTTTGTATATTATATGGATGATCTGATTCGCAAGGACCATGATTGTGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGCGAAACATACTCAACTTGAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009575 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA DUF825

Protein Analysis

226

Amino Acids

26.88

Weight (kDa)

9.59

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf2	PF05695	5 - 226	1.6e-131	Ycf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00860 ATCG01280
fragaria_vesca	FvH4_c3g00160
malus_domestica	MD15G1364000.v1.1 MD15G1364100.v1.1 MD15G1364300.v1.1
pyrus_communis	pycom11g21060 pycom12397g00050 pycom12397g00150 pycom13g12670 pycom13g17800 pycom1682g00010 pycom3137g00010 pycom3137g00020
rosa_chinensis	RchiOBHm_Chr2g0118461 RchiOBHm_Chr2g0118471
rosa_laevigata	RLG00000000001 RLG00000000007 RLG00000000030 RLG00000000031 RLG00000000036 RLG00000000037 RLG00000000059 RLG00000000060 RLG00000000094 RLG00000000095 RLG00000000101 RLG00000000102 RLG00000000181 RLG00000000182 RLG00000000214 RLG00000000215 RLG00000000239 RLG00000000254 RLG00000000255 RLG00000000301 RLG00000000305 RLG00000000306 RLG00000016742 RLG00000029142 RLG00000037092 RLG00000037093 RLG00000037098 RLG00000037099 RLG00000037112
rosa_rugosa	RorugMtG0003000.1 RorugMtG0003400.1
rosa_samantha	Rh1BG209600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
AccII	CGCG	1 cut(s)	457
AccIII	TCCGGA	1 cut(s)	565
AciI	CCGC	1 cut(s)	457
AclI	AACGTT	1 cut(s)	58
AclWI	GGATC	3 cut(s)	380, 393, 482
AcsI	RAATTY	4 cut(s)	9, 84, 262, 673
AfaI	GTAC	2 cut(s)	165, 400
AgsI	TTSAA	4 cut(s)	14, 129, 544, 673
AjnI	CCWGG	1 cut(s)	381
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	2 cut(s)	375, 505
AluI	AGCT	2 cut(s)	375, 505
AlwI	GGATC	3 cut(s)	380, 393, 482
Aor13HI	TCCGGA	1 cut(s)	565
ApoI	RAATTY	4 cut(s)	9, 84, 262, 673
AspS9I	GGNCC	5 cut(s)	4, 24, 181, 272, 610
AvaII	GGWCC	5 cut(s)	4, 24, 181, 272, 610
BamHI	GGATCC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	300
BccI	CCATC	2 cut(s)	57, 205
BciT130I	CCWGG	1 cut(s)	383
BciVI	GTATCC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	104
BglII	AGATCT	2 cut(s)	363, 534
BmcAI	AGTACT	2 cut(s)	165, 400
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	5 cut(s)	4, 24, 181, 272, 610
BmgT120I	GGNCC	5 cut(s)	4, 24, 181, 272, 610
BmiI	GGNNCC	3 cut(s)	25, 274, 387
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	457
BmuI	ACTGGG	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	644
BsaWI	WCCGGW	1 cut(s)	565
Bse1I	ACTGG	3 cut(s)	452, 476, 529
BseAI	TCCGGA	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	383
BseCI	ATCGAT	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	644
BseGI	GGATG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	3 cut(s)	452, 476, 529
Bsh1236I	CGCG	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	565
Bsp143I	GATC	6 cut(s)	363, 385, 474, 534, 595, 631
BspACI	CCGC	1 cut(s)	457
BspCNI	CTCAG	1 cut(s)	361
BspDI	ATCGAT	1 cut(s)	139
BspEI	TCCGGA	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	677
BspLI	GGNNCC	3 cut(s)	25, 274, 387
BspPI	GGATC	3 cut(s)	380, 393, 482
BsrI	ACTGG	3 cut(s)	452, 476, 529
BssECI	CCNNGG	1 cut(s)	644
BssMI	GATC	6 cut(s)	363, 385, 474, 534, 595, 631
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	289, 520
Bst6I	CTCTTC	1 cut(s)	644
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	457
BstKTI	GATC	6 cut(s)	366, 388, 477, 537, 598, 634
BstMBI	GATC	6 cut(s)	363, 385, 474, 534, 595, 631
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	3 cut(s)	363, 385, 534
BstYI	RGATCY	3 cut(s)	363, 385, 534
Bsu15I	ATCGAT	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	104
BsuTUI	ATCGAT	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	25, 522
CciI	TCATGA	1 cut(s)	677
Cfr13I	GGNCC	5 cut(s)	4, 24, 181, 272, 610
ClaI	ATCGAT	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	164, 399
CviAII	CATG	3 cut(s)	433, 614, 678
CviJI	RGCY	3 cut(s)	244, 375, 505
CviKI_1	RGCY	3 cut(s)	244, 375, 505
CviQI	GTAC	2 cut(s)	164, 399
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	6 cut(s)	365, 387, 476, 536, 597, 633
DpnII	GATC	6 cut(s)	363, 385, 474, 534, 595, 631
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	5 cut(s)	4, 24, 181, 272, 610
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	556
FaeI	CATG	3 cut(s)	436, 617, 681
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	432, 613, 677
FokI	GGATG	1 cut(s)	605
FspBI	CTAG	1 cut(s)	495
HapII	CCGG	1 cut(s)	566
Hin1II	CATG	3 cut(s)	436, 617, 681
HinfI	GANTC	4 cut(s)	296, 440, 491, 601
HpaII	CCGG	1 cut(s)	566
Hpy188I	TCNGA	5 cut(s)	370, 390, 479, 600, 645
Hpy188III	TCNNGA	4 cut(s)	53, 217, 566, 678
HpyCH4III	ACNGT	2 cut(s)	289, 520
HpyCH4IV	ACGT	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	436, 617, 681
Kpn2I	TCCGGA	1 cut(s)	565
Kzo9I	GATC	6 cut(s)	363, 385, 474, 534, 595, 631
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	6 cut(s)	365, 387, 476, 536, 597, 633
MboI	GATC	6 cut(s)	363, 385, 474, 534, 595, 631
MboII	GAAGA	6 cut(s)	239, 300, 305, 338, 492, 661
MflI	RGATCY	3 cut(s)	363, 385, 534
MluCI	AATT	8 cut(s)	9, 14, 84, 109, 262, 528, 623, 673
MnlI	CCTC	4 cut(s)	459, 480, 639, 645
MroI	TCCGGA	1 cut(s)	565
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	618
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	1 cut(s)	457
NdeII	GATC	6 cut(s)	363, 385, 474, 534, 595, 631
NlaIII	CATG	3 cut(s)	436, 617, 681
NlaIV	GGNNCC	3 cut(s)	25, 274, 387
NmuCI	GTSAC	1 cut(s)	520
PagI	TCATGA	1 cut(s)	677
PfeI	GAWTC	4 cut(s)	296, 440, 491, 601
PfoI	TCCNGGA	1 cut(s)	381
PpuMI	RGGWCCY	1 cut(s)	24
PsiI	TTATAA	1 cut(s)	65
Psp1406I	AACGTT	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	25, 274, 387
PspPI	GGNCC	5 cut(s)	4, 24, 181, 272, 610
PspPPI	RGGWCCY	1 cut(s)	24
PsuI	RGATCY	3 cut(s)	363, 385, 534
RsaI	GTAC	2 cut(s)	165, 400
RsaNI	GTAC	2 cut(s)	164, 399
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	6 cut(s)	363, 385, 474, 534, 595, 631
Sau96I	GGNCC	5 cut(s)	4, 24, 181, 272, 610
ScaI	AGTACT	2 cut(s)	165, 400
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	6 cut(s)	29, 61, 259, 326, 377, 507
SinI	GGWCC	5 cut(s)	4, 24, 181, 272, 610
SmiMI	CAYNNNNRTG	1 cut(s)	618
Sse9I	AATT	8 cut(s)	9, 14, 84, 109, 262, 528, 623, 673
SsiI	CCGC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	289, 520
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	3 cut(s)	139, 205, 216
TasI	AATT	8 cut(s)	9, 14, 84, 109, 262, 528, 623, 673
TatI	WGTACW	2 cut(s)	163, 398
TfiI	GAWTC	4 cut(s)	296, 440, 491, 601
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	25, 529
TseFI	GTSAC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	5 cut(s)	20, 256, 275, 528, 666
TspRI	CASTG	2 cut(s)	25, 529
VpaK11BI	GGWCC	5 cut(s)	4, 24, 181, 272, 610
XapI	RAATTY	4 cut(s)	9, 84, 262, 673
XspI	CTAG	1 cut(s)	495
ZrmI	AGTACT	2 cut(s)	165, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.