RLG00000000254

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001704
Physical Location & Seq
Forward (+)
205977 .. 207418
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000254

Sequence Viewer

Length: 1026 bp
ATGAAAGGGCATCAATTCAAATCCTGGATTTTCGAATTGAGAGAGATATTGAGAGAGATCAAGAATTCTCACTATTTCTTAGATTCATGGACCAAATTCAATTCAGTGGGATCTTTCATTCACATTTTTTTCCATCAAGAACGTTTTATAAAACTTTTGGACTTCCGAATTTGGAGTATCCTATTTTCACGCAATTCACATTTACAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAGTACTATTTGTAGTAGTGGTCCTTATATATCGTATTAACAATCGAAAGATGGTCGAGAGAAAAAATCTCTATTTGACAGGGCTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATACAGTGGAAGAATCTTTTGGGTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTGGTGGAGGAACTGGATCGGAAAAAAGAGGGATTCTAGTTGTAAGCTATCTAATGAAATCGTCGCTGGAATTGAGATCTCATTCAAAGAGAAAGATATCAAATATCCGGAGTTTCTTTTTGTATATTATATGGATGATCCGATTCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGCGAAACATACTCAACTTGAATTCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGAAAAAATACCAATTGAAGCGGAGGTTTTCTTCAAACAACAAGGAGCTGGGTCAACTATTCAATCAAATGAAATTGAGCATGTTTCCCATCTCTTCTCGAGAAACAAGTGGGCTATGCAAAATTGTGCTCAATTTCATATGTGGCAATTCCGCCAAGATCTCTTCTTTAGTTGGGGAAGAATCCGCACGAATCGGATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF825

Protein Analysis

342

Amino Acids

40.96

Weight (kDa)

9.7

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 336 5.4e-216 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AccII CGCG 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 649
AciI CCGC 4 cut(s) 541, 842, 973, 1006
AclI AACGTT 1 cut(s) 142
AclWI GGATC 5 cut(s) 118, 464, 477, 566, 674
AcsI RAATTY 5 cut(s) 64, 95, 168, 346, 757
AfaI GTAC 2 cut(s) 249, 484
AfiI CCNNNNNNNGG 1 cut(s) 703
AgsI TTSAA 8 cut(s) 19, 100, 213, 628, 757, 839, 856, 884
AjnI CCWGG 2 cut(s) 23, 465
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 4 cut(s) 459, 589, 769, 869
AluI AGCT 4 cut(s) 459, 589, 769, 869
Alw21I GWGCWC 1 cut(s) 952
AlwI GGATC 5 cut(s) 118, 464, 477, 566, 674
Ama87I CYCGRG 1 cut(s) 919
Aor13HI TCCGGA 1 cut(s) 649
ApoI RAATTY 5 cut(s) 64, 95, 168, 346, 757
AspS9I GGNCC 4 cut(s) 90, 265, 356, 694
AsuII TTCGAA 2 cut(s) 33, 774
AvaI CYCGRG 1 cut(s) 919
AvaII GGWCC 4 cut(s) 90, 265, 356, 694
BamHI GGATCC 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 952
BccI CCATC 3 cut(s) 141, 289, 918
BciT130I CCWGG 2 cut(s) 25, 467
BciVI GTATCC 1 cut(s) 188
BfaI CTAG 1 cut(s) 579
BfuI GTATCC 1 cut(s) 188
BglII AGATCT 3 cut(s) 447, 618, 979
BmcAI AGTACT 2 cut(s) 249, 484
Bme1390I CCNGG 2 cut(s) 25, 467
Bme18I GGWCC 4 cut(s) 90, 265, 356, 694
BmeT110I CYCGRG 1 cut(s) 919
BmgT120I GGNCC 4 cut(s) 90, 265, 356, 694
BmiI GGNNCC 2 cut(s) 358, 471
BmrFI CCNGG 2 cut(s) 25, 467
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 384
Bpu14I TTCGAA 2 cut(s) 33, 774
Bsa29I ATCGAT 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 728
BsaWI WCCGGW 1 cut(s) 649
Bsc4I CCNNNNNNNGG 1 cut(s) 703
Bse1I ACTGG 3 cut(s) 536, 560, 797
BseAI TCCGGA 1 cut(s) 649
BseBI CCWGG 2 cut(s) 25, 467
BseCI ATCGAT 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 728
BseGI GGATG 1 cut(s) 682
BseLI CCNNNNNNNGG 1 cut(s) 703
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 3 cut(s) 536, 560, 797
BseYI CCCAGC 1 cut(s) 869
Bsh1236I CGCG 1 cut(s) 541
BshVI ATCGAT 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 952
BsiHKCI CYCGRG 1 cut(s) 919
BsiSI CCGG 1 cut(s) 650
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 1 cut(s) 703
BsmFI GGGAC 1 cut(s) 777
BsoBI CYCGRG 1 cut(s) 919
Bsp119I TTCGAA 2 cut(s) 33, 774
Bsp1286I GDGCHC 1 cut(s) 952
Bsp13I TCCGGA 1 cut(s) 649
BspACI CCGC 4 cut(s) 541, 842, 973, 1006
BspCNI CTCAG 1 cut(s) 445
BspDI ATCGAT 1 cut(s) 223
BspEI TCCGGA 1 cut(s) 649
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 358, 471
BspPI GGATC 5 cut(s) 118, 464, 477, 566, 674
BspT104I TTCGAA 2 cut(s) 33, 774
BsrI ACTGG 3 cut(s) 536, 560, 797
BssECI CCNNGG 1 cut(s) 728
Bst2UI CCWGG 2 cut(s) 25, 467
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 3 cut(s) 728, 920, 989
BstBI TTCGAA 2 cut(s) 33, 774
BstDEI CTNAG 3 cut(s) 79, 453, 781
BstF5I GGATG 1 cut(s) 682
BstFNI CGCG 1 cut(s) 541
BstNI CCWGG 2 cut(s) 25, 467
BstNSI RCATGY 1 cut(s) 905
BstSCI CCNGG 2 cut(s) 23, 465
BstUI CGCG 1 cut(s) 541
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 5 cut(s) 110, 447, 469, 618, 979
BstYI RGATCY 5 cut(s) 110, 447, 469, 618, 979
Bsu15I ATCGAT 1 cut(s) 223
BsuI GTATCC 1 cut(s) 188
BsuTUI ATCGAT 1 cut(s) 223
BtsCI GGATG 1 cut(s) 682
BtsIMutI CAGTG 2 cut(s) 111, 378
Cfr13I GGNCC 4 cut(s) 90, 265, 356, 694
ClaI ATCGAT 1 cut(s) 223
Csp6I GTAC 2 cut(s) 248, 483
CviAII CATG 5 cut(s) 87, 517, 698, 808, 902
CviJI RGCY 6 cut(s) 328, 459, 589, 769, 869, 935
CviKI_1 RGCY 6 cut(s) 328, 459, 589, 769, 869, 935
CviQI GTAC 2 cut(s) 248, 483
DdeI CTNAG 3 cut(s) 79, 453, 781
Eam1104I CTCTTC 3 cut(s) 728, 920, 989
EarI CTCTTC 3 cut(s) 728, 920, 989
EciI GGCGGA 1 cut(s) 962
Eco32I GATATC 1 cut(s) 640
Eco47I GGWCC 4 cut(s) 90, 265, 356, 694
Eco88I CYCGRG 1 cut(s) 919
EcoRI GAATTC 2 cut(s) 64, 757
EcoRII CCWGG 2 cut(s) 23, 465
EcoRV GATATC 1 cut(s) 640
FaeI CATG 5 cut(s) 90, 520, 701, 811, 905
FaqI GGGAC 1 cut(s) 777
FatI CATG 5 cut(s) 86, 516, 697, 807, 901
FauNDI CATATG 1 cut(s) 960
FokI GGATG 1 cut(s) 689
FspBI CTAG 1 cut(s) 579
GsaI CCCAGC 1 cut(s) 873
HapII CCGG 1 cut(s) 650
Hin1II CATG 5 cut(s) 90, 520, 701, 811, 905
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HinfI GANTC 7 cut(s) 83, 380, 524, 575, 685, 1002, 1012
HpaII CCGG 1 cut(s) 650
Hpy166II GTNNAC 1 cut(s) 876
Hpy188I TCNGA 7 cut(s) 167, 454, 474, 563, 684, 729, 1017
Hpy188III TCNNGA 9 cut(s) 61, 137, 232, 301, 650, 762, 821, 919, 921
Hpy8I GTNNAC 1 cut(s) 876
Hpy99I CGWCG 1 cut(s) 608
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 940
HpyF3I CTNAG 3 cut(s) 79, 453, 781
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 5 cut(s) 90, 520, 701, 811, 905
Kpn2I TCCGGA 1 cut(s) 649
LmnI GCTCC 2 cut(s) 426, 866
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 579
MaeII ACGT 1 cut(s) 142
MboII GAAGA 9 cut(s) 323, 384, 389, 422, 745, 844, 907, 976, 1011
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 5 cut(s) 110, 447, 469, 618, 979
MhlI GDGCHC 1 cut(s) 952
MnlI CCTC 5 cut(s) 543, 564, 723, 729, 838
MroI TCCGGA 1 cut(s) 649
MseI TTAA 1 cut(s) 282
MspI CCGG 1 cut(s) 650
MspR9I CCNGG 2 cut(s) 25, 467
MunI CAATTG 1 cut(s) 834
MvaI CCWGG 2 cut(s) 25, 467
MvnI CGCG 1 cut(s) 541
NdeI CATATG 1 cut(s) 960
NlaIII CATG 5 cut(s) 90, 520, 701, 811, 905
NlaIV GGNNCC 2 cut(s) 358, 471
NspI RCATGY 1 cut(s) 905
NspV TTCGAA 2 cut(s) 33, 774
PaeR7I CTCGAG 1 cut(s) 919
PfeI GAWTC 7 cut(s) 83, 380, 524, 575, 685, 1002, 1012
PfoI TCCNGGA 2 cut(s) 23, 465
PsiI TTATAA 1 cut(s) 149
Psp1406I AACGTT 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 23, 465
PspFI CCCAGC 1 cut(s) 869
PspGI CCWGG 2 cut(s) 23, 465
PspN4I GGNNCC 2 cut(s) 358, 471
PspPI GGNCC 4 cut(s) 90, 265, 356, 694
PsuI RGATCY 5 cut(s) 110, 447, 469, 618, 979
RsaI GTAC 2 cut(s) 249, 484
RsaNI GTAC 2 cut(s) 248, 483
SaqAI TTAA 1 cut(s) 282
Sau96I GGNCC 4 cut(s) 90, 265, 356, 694
ScaI AGTACT 2 cut(s) 249, 484
ScrFI CCNGG 2 cut(s) 25, 467
SduI GDGCHC 1 cut(s) 952
SetI ASST 8 cut(s) 145, 343, 410, 461, 591, 771, 849, 871
SfaNI GCATC 1 cut(s) 19
Sfr274I CTCGAG 1 cut(s) 919
SfuI TTCGAA 2 cut(s) 33, 774
SinI GGWCC 4 cut(s) 90, 265, 356, 694
SlaI CTCGAG 1 cut(s) 919
SmlI CTYRAG 1 cut(s) 919
SmoI CTYRAG 1 cut(s) 919
SsiI CCGC 4 cut(s) 541, 842, 973, 1006
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 23, 465
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 145
TaqI TCGA 6 cut(s) 33, 223, 289, 300, 774, 920
TatI WGTACW 2 cut(s) 247, 482
TfiI GAWTC 7 cut(s) 83, 380, 524, 575, 685, 1002, 1012
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 111, 378
TspDTI ATGAA 8 cut(s) 17, 75, 106, 340, 359, 612, 906, 947
TspRI CASTG 2 cut(s) 111, 378
VpaK11BI GGWCC 4 cut(s) 90, 265, 356, 694
XapI RAATTY 5 cut(s) 64, 95, 168, 346, 757
XceI RCATGY 1 cut(s) 905
XhoI CTCGAG 1 cut(s) 919
XspI CTAG 1 cut(s) 579
ZrmI AGTACT 2 cut(s) 249, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.