RLG00000037112

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001704
Physical Location & Seq
Forward (+)
88483540 .. 88485129
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037112

Sequence Viewer

Length: 1590 bp
ATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTTTATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACTCATATTCCCAAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTAAGATACGAAGGCTTCTTATTCCACAACAGCGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCTATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACACAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAAGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCCGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGCTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAACGGGATTACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGTAGAAGGCGCTCCGGTGGGATCCTCCCGGACAGAAAAAGATTGCAGTCAGTTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAACCAAGGAATCCCTTAGATATGATGCAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTTTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTCGACCTGCAACGGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGTCAGGTCATTTCAGGGCAAGCGGATCATTTATGATGAAAAGGATGGGCTTCAAGAGAATGATTCGGAGTTCTTGCAGAGTCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGGCTTCTTTCGAATAAGCCAATTCGTTTGGGACCCTGCGGATCCACTCTTTTTCCTATTCAAAGATCCGCCTTTTATCTCTGTGTTTTCACATCGAGAATTCTTTGCAGATGAAGAGATGCCAAAGGGGCTTCTTACTTCCCAAACAGATCTTCCTACAACTCTATATAAACGCTGGTTTATCAAGAATACGCAAGAAAGGCACTTCGAATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAACAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAAGCTGTTCCTATCTAACGAAACGCTATTGATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

530

Amino Acids

61.43

Weight (kDa)

6.18

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1014
AccB1I GGYRCC 1 cut(s) 1062
AccBSI CCGCTC 1 cut(s) 173
AciI CCGC 4 cut(s) 171, 1147, 1280, 1310
AcsI RAATTY 1 cut(s) 1340
AcyI GRCGYC 1 cut(s) 1063
AfaI GTAC 5 cut(s) 339, 528, 608, 617, 1211
AfiI CCNNNNNNNGG 1 cut(s) 891
AgsI TTSAA 4 cut(s) 977, 1033, 1178, 1303
AhdI GACNNNNNGTC 1 cut(s) 703
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 1377, 1409
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 2 cut(s) 182, 1555
AluI AGCT 2 cut(s) 182, 1555
Alw26I GTCTC 2 cut(s) 9, 711
AoxI GGCC 5 cut(s) 366, 510, 781, 881, 1097
ApoI RAATTY 1 cut(s) 1340
Asp700I GAANNNNTTC 1 cut(s) 293
AspLEI GCGC 2 cut(s) 809, 1065
AspS9I GGNCC 7 cut(s) 315, 367, 510, 716, 882, 1098, 1273
AsuC2I CCSGG 2 cut(s) 714, 826
AsuII TTCGAA 3 cut(s) 621, 1252, 1449
AvaII GGWCC 3 cut(s) 315, 716, 1273
BamHI GGATCC 4 cut(s) 166, 486, 818, 1282
BanI GGYRCC 1 cut(s) 1062
BanII GRGCYC 1 cut(s) 1051
BauI CACGAG 1 cut(s) 1218
BccI CCATC 3 cut(s) 1163, 1467, 1534
BceAI ACGGC 1 cut(s) 497
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 2 cut(s) 937, 1581
BcnI CCSGG 2 cut(s) 714, 826
BcoDI GTCTC 2 cut(s) 9, 711
BfaI CTAG 4 cut(s) 120, 267, 773, 1053
BfoI RGCGCY 2 cut(s) 810, 1066
BfuAI ACCTGC 1 cut(s) 1014
BglI GCCNNNNNGGC 2 cut(s) 1071, 1369
BglII AGATCT 4 cut(s) 343, 422, 1226, 1390
Bme1390I CCNGG 3 cut(s) 97, 714, 826
Bme18I GGWCC 3 cut(s) 315, 716, 1273
BmeRI GACNNNNNGTC 1 cut(s) 703
BmgT120I GGNCC 7 cut(s) 315, 367, 510, 716, 882, 1098, 1273
BmrFI CCNGG 3 cut(s) 97, 714, 826
BmsI GCATC 2 cut(s) 900, 1350
BpmI CTGGAG 1 cut(s) 79
Bpu14I TTCGAA 3 cut(s) 621, 1252, 1449
BpuEI CTTGAG 1 cut(s) 678
BpuMI CCSGG 2 cut(s) 714, 826
Bsa29I ATCGAT 1 cut(s) 374
BsaBI GATNNNNATC 2 cut(s) 768, 858
BsaHI GRCGYC 1 cut(s) 1063
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 5 cut(s) 70, 96, 324, 890, 1067
BsaWI WCCGGW 1 cut(s) 811
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 981, 1011
Bsc4I CCNNNNNNNGG 1 cut(s) 891
Bse3DI GCAATG 1 cut(s) 869
Bse8I GATNNNNATC 2 cut(s) 768, 858
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 374
BseDI CCNNGG 5 cut(s) 70, 96, 324, 890, 1067
BseGI GGATG 3 cut(s) 49, 1174, 1526
BseJI GATNNNNATC 2 cut(s) 768, 858
BseLI CCNNNNNNNGG 1 cut(s) 891
BseMI GCAATG 1 cut(s) 869
BseRI GAGGAG 1 cut(s) 1034
Bsh1285I CGRYCG 1 cut(s) 690
BshFI GGCC 5 cut(s) 368, 512, 783, 883, 1099
BshNI GGYRCC 1 cut(s) 1062
BshVI ATCGAT 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 690
BsiSI CCGG 4 cut(s) 681, 714, 812, 826
BslFI GGGAC 1 cut(s) 1286
BslI CCNNNNNNNGG 1 cut(s) 891
BsmAI GTCTC 2 cut(s) 9, 711
BsmFI GGGAC 1 cut(s) 1286
BsnI GGCC 5 cut(s) 368, 512, 783, 883, 1099
Bso31I GGTCTC 1 cut(s) 711
Bsp119I TTCGAA 3 cut(s) 621, 1252, 1449
Bsp1286I GDGCHC 1 cut(s) 1051
Bsp1407I TGTACA 1 cut(s) 606
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 4 cut(s) 171, 1147, 1280, 1310
BspANI GGCC 5 cut(s) 368, 512, 783, 883, 1099
BspDI ATCGAT 1 cut(s) 374
BspHI TCATGA 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 1014
BspQI GCTCTTC 1 cut(s) 435
BspT104I TTCGAA 3 cut(s) 621, 1252, 1449
BspT107I GGYRCC 1 cut(s) 1062
BspTNI GGTCTC 1 cut(s) 711
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 869
BsrGI TGTACA 1 cut(s) 606
BssECI CCNNGG 5 cut(s) 70, 96, 324, 890, 1067
BssNI GRCGYC 1 cut(s) 1063
BssSI CACGAG 1 cut(s) 1218
BssT1I CCWWGG 3 cut(s) 324, 890, 1067
Bst2BI CACGAG 1 cut(s) 1218
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 1490
Bst6I CTCTTC 2 cut(s) 435, 1350
BstACI GRCGYC 1 cut(s) 1063
BstAUI TGTACA 1 cut(s) 606
BstBI TTCGAA 3 cut(s) 621, 1252, 1449
BstC8I GCNNGC 1 cut(s) 1145
BstDEI CTNAG 3 cut(s) 533, 901, 1478
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 49, 1174, 1526
BstH2I RGCGCY 2 cut(s) 810, 1066
BstHHI GCGC 2 cut(s) 809, 1065
BstMAI GTCTC 2 cut(s) 9, 711
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 5 cut(s) 179, 880, 1071, 1369, 1441
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 3 cut(s) 95, 712, 824
BstXI CCANNNNNNTGG 3 cut(s) 163, 325, 1108
Bsu15I ATCGAT 1 cut(s) 374
BsuRI GGCC 5 cut(s) 368, 512, 783, 883, 1099
BsuTUI ATCGAT 1 cut(s) 374
BtgI CCRYGG 1 cut(s) 324
BtgZI GCGATG 1 cut(s) 1448
BtsCI GGATG 3 cut(s) 49, 1174, 1526
BveI ACCTGC 1 cut(s) 1014
Cac8I GCNNGC 1 cut(s) 1145
CciI TCATGA 1 cut(s) 34
CfoI GCGC 2 cut(s) 809, 1065
Cfr13I GGNCC 7 cut(s) 315, 367, 510, 716, 882, 1098, 1273
ClaI ATCGAT 1 cut(s) 374
Csp6I GTAC 5 cut(s) 338, 527, 607, 616, 1210
CviAII CATG 7 cut(s) 35, 201, 325, 482, 582, 637, 779
CviQI GTAC 5 cut(s) 338, 527, 607, 616, 1210
DdeI CTNAG 3 cut(s) 533, 901, 1478
DinI GGCGCC 1 cut(s) 1064
DriI GACNNNNNGTC 1 cut(s) 703
Eam1104I CTCTTC 2 cut(s) 435, 1350
Eam1105I GACNNNNNGTC 1 cut(s) 703
EarI CTCTTC 2 cut(s) 435, 1350
EciI GGCGGA 1 cut(s) 1299
Eco130I CCWWGG 3 cut(s) 324, 890, 1067
Eco24I GRGCYC 1 cut(s) 1051
Eco31I GGTCTC 1 cut(s) 711
Eco47I GGWCC 3 cut(s) 315, 716, 1273
EcoO109I RGGNCCY 2 cut(s) 367, 1273
EcoRI GAATTC 1 cut(s) 1340
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 3 cut(s) 324, 890, 1067
EcoT22I ATGCAT 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 1051
EgeI GGCGCC 1 cut(s) 1064
EheI GGCGCC 1 cut(s) 1064
ErhI CCWWGG 3 cut(s) 324, 890, 1067
FaeI CATG 7 cut(s) 38, 204, 328, 485, 585, 640, 782
FaqI GGGAC 1 cut(s) 1286
FatI CATG 7 cut(s) 34, 200, 324, 481, 581, 636, 778
FauI CCCGC 1 cut(s) 178
FbaI TGATCA 2 cut(s) 937, 1581
FokI GGATG 3 cut(s) 56, 1181, 1513
FriOI GRGCYC 1 cut(s) 1051
FspBI CTAG 4 cut(s) 120, 267, 773, 1053
GlaI GCGC 2 cut(s) 808, 1064
GsuI CTGGAG 1 cut(s) 79
HaeII RGCGCY 2 cut(s) 810, 1066
HaeIII GGCC 5 cut(s) 368, 512, 783, 883, 1099
HapII CCGG 4 cut(s) 681, 714, 812, 826
HhaI GCGC 2 cut(s) 809, 1065
Hin1I GRCGYC 1 cut(s) 1063
Hin1II CATG 7 cut(s) 38, 204, 328, 485, 585, 640, 782
Hin6I GCGC 2 cut(s) 807, 1063
HinP1I GCGC 2 cut(s) 807, 1063
HpaII CCGG 4 cut(s) 681, 714, 812, 826
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 7 cut(s) 186, 501, 769, 942, 970, 1192, 1531
Hpy188III TCNNGA 7 cut(s) 35, 41, 476, 695, 1178, 1337, 1426
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 7 cut(s) 210, 501, 584, 797, 974, 980, 986
HpyCH4III ACNGT 1 cut(s) 1490
HpyCH4V TGCA 8 cut(s) 12, 204, 518, 843, 913, 1009, 1201, 1349
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 880, 1071, 1369, 1441
HpyF3I CTNAG 3 cut(s) 533, 901, 1478
Hsp92I GRCGYC 1 cut(s) 1063
Hsp92II CATG 7 cut(s) 38, 204, 328, 485, 585, 640, 782
HspAI GCGC 2 cut(s) 807, 1063
KasI GGCGCC 1 cut(s) 1062
KflI GGGWCCC 1 cut(s) 1273
Ksp22I TGATCA 2 cut(s) 937, 1581
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 4 cut(s) 187, 548, 814, 1054
LweI GCATC 2 cut(s) 900, 1350
MaeI CTAG 4 cut(s) 120, 267, 773, 1053
MaeIII GTNAC 2 cut(s) 584, 865
MbiI CCGCTC 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 1051
Mly113I GGCGCC 1 cut(s) 1063
MlyI GAGTC 5 cut(s) 62, 139, 744, 1005, 1213
MnlI CCTC 6 cut(s) 80, 358, 832, 1010, 1012, 1015
Mph1103I ATGCAT 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 3 cut(s) 194, 207, 647
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 4 cut(s) 681, 714, 812, 826
MspR9I CCNGG 3 cut(s) 97, 714, 826
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 5 cut(s) 179, 880, 1071, 1369, 1441
NarI GGCGCC 1 cut(s) 1063
NciI CCSGG 2 cut(s) 714, 826
NcoI CCATGG 1 cut(s) 324
NlaIII CATG 7 cut(s) 38, 204, 328, 485, 585, 640, 782
NmuCI GTSAC 1 cut(s) 865
NsiI ATGCAT 1 cut(s) 206
NspI RCATGY 1 cut(s) 204
NspV TTCGAA 3 cut(s) 621, 1252, 1449
PagI TCATGA 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 7 cut(s) 22, 309, 764, 895, 965, 1187, 1459
PfoI TCCNGGA 1 cut(s) 824
PleI GAGTC 5 cut(s) 61, 139, 744, 1004, 1212
PluTI GGCGCC 1 cut(s) 1066
PpsI GAGTC 5 cut(s) 61, 139, 744, 1004, 1212
PpuMI RGGWCCY 1 cut(s) 1273
Psp5II RGGWCCY 1 cut(s) 1273
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 7 cut(s) 315, 367, 510, 716, 882, 1098, 1273
PspPPI RGGWCCY 1 cut(s) 1273
PsrI GAACNNNNNNTAC 2 cut(s) 456, 488
RsaI GTAC 5 cut(s) 339, 528, 608, 617, 1211
RsaNI GTAC 5 cut(s) 338, 527, 607, 616, 1210
RseI CAYNNNNRTG 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 3 cut(s) 194, 207, 647
Sau96I GGNCC 7 cut(s) 315, 367, 510, 716, 882, 1098, 1273
SchI GAGTC 5 cut(s) 62, 139, 744, 1005, 1213
ScrFI CCNGG 3 cut(s) 97, 714, 826
SduI GDGCHC 1 cut(s) 1051
SetI ASST 5 cut(s) 184, 702, 1008, 1133, 1557
SfaNI GCATC 2 cut(s) 900, 1350
SfoI GGCGCC 1 cut(s) 1064
SfuI TTCGAA 3 cut(s) 621, 1252, 1449
SinI GGWCC 3 cut(s) 315, 716, 1273
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
SsiI CCGC 4 cut(s) 171, 1147, 1280, 1310
SspDI GGCGCC 1 cut(s) 1062
SspI AATATT 1 cut(s) 127
SspMI CTAG 4 cut(s) 120, 267, 773, 1053
StyD4I CCNGG 3 cut(s) 95, 712, 824
StyI CCWWGG 3 cut(s) 324, 890, 1067
TaaI ACNGT 1 cut(s) 1490
TaqII GACCGA 1 cut(s) 676
TatI WGTACW 2 cut(s) 526, 606
TfiI GAWTC 7 cut(s) 22, 309, 764, 895, 965, 1187, 1459
Tru1I TTAA 3 cut(s) 194, 207, 647
Tru9I TTAA 3 cut(s) 194, 207, 647
TseFI GTSAC 1 cut(s) 865
Tsp45I GTSAC 1 cut(s) 865
TspGWI ACGGA 2 cut(s) 1027, 1502
VpaK11BI GGWCC 3 cut(s) 315, 716, 1273
XapI RAATTY 1 cut(s) 1340
XceI RCATGY 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 4 cut(s) 120, 267, 773, 1053
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.