Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001704

Physical Location & Seq

Genomic Coordinates Reverse (-)

33653248 .. 33653721

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTCGAGAGAAAAAATCTCTATTTGATAGGGCTTCTTCCTATACCTATGAATTTCATTGGACCCAAAAATGATACAGTGGAAGAATCTTTTGGGTCTTCCAATATCAATAGGTTGATTGTTTCGCTCTTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCTAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTTGCGGTGGTGGAGGAACTGGATCGGAAAAAAGAGGGATTCTAGTTGTAAGCTATCTAATGAAACCGTCGCTGGAATTGAGATCTCATTCAAAGAGAAAGATATCAAATATCCGGAGTTTCTTTTTTTATATTACATGGATGATCCGATTCGCAAGGACCATGATTGGGAATTGTTTGATCATCTTTCTCCGAGGAAGAGACGAAACATACTCAACTTGAATTCTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009575 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA DUF825

Protein Analysis

158

Amino Acids

18.51

Weight (kDa)

9.1

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf2	PF05695	1 - 157	1.6e-98	Ycf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00860 ATCG01280
fragaria_vesca	FvH4_c3g00160
malus_domestica	MD15G1364000.v1.1 MD15G1364100.v1.1 MD15G1364300.v1.1
pyrus_communis	pycom11g21060 pycom12397g00050 pycom12397g00150 pycom13g12670 pycom13g17800 pycom1682g00010 pycom3137g00010 pycom3137g00020
rosa_chinensis	RchiOBHm_Chr2g0118461 RchiOBHm_Chr2g0118471
rosa_laevigata	RLG00000000001 RLG00000000007 RLG00000000030 RLG00000000031 RLG00000000036 RLG00000000037 RLG00000000059 RLG00000000060 RLG00000000094 RLG00000000095 RLG00000000101 RLG00000000102 RLG00000000181 RLG00000000182 RLG00000000214 RLG00000000215 RLG00000000239 RLG00000000254 RLG00000000255 RLG00000000301 RLG00000000305 RLG00000000306 RLG00000016742 RLG00000029142 RLG00000037092 RLG00000037093 RLG00000037098 RLG00000037099 RLG00000037112
rosa_rugosa	RorugMtG0003000.1 RorugMtG0003400.1
rosa_samantha	Rh1BG209600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	4 cut(s)	170, 183, 272, 380
AcsI	RAATTY	2 cut(s)	52, 463
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	334, 463
AjnI	CCWGG	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	2 cut(s)	165, 295
AluI	AGCT	2 cut(s)	165, 295
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	4 cut(s)	170, 183, 272, 380
Aor13HI	TCCGGA	1 cut(s)	355
ApoI	RAATTY	2 cut(s)	52, 463
AspS9I	GGNCC	2 cut(s)	62, 400
AvaII	GGWCC	2 cut(s)	62, 400
BamHI	GGATCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	285
BglII	AGATCT	2 cut(s)	153, 324
BmcAI	AGTACT	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	2 cut(s)	62, 400
BmgT120I	GGNCC	2 cut(s)	62, 400
BmiI	GGNNCC	2 cut(s)	64, 177
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	242, 266
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	242, 266
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	436
BsmBI	CGTCTC	1 cut(s)	436
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	6 cut(s)	153, 175, 264, 324, 385, 421
BspACI	CCGC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	64, 177
BspPI	GGATC	4 cut(s)	170, 183, 272, 380
BsrI	ACTGG	2 cut(s)	242, 266
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	6 cut(s)	153, 175, 264, 324, 385, 421
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	79, 310
Bst6I	CTCTTC	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	6 cut(s)	156, 178, 267, 327, 388, 424
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	6 cut(s)	153, 175, 264, 324, 385, 421
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	3 cut(s)	153, 175, 324
BstYI	RGATCY	3 cut(s)	153, 175, 324
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	62, 400
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	3 cut(s)	223, 379, 404
CviJI	RGCY	3 cut(s)	34, 165, 295
CviKI_1	RGCY	3 cut(s)	34, 165, 295
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	6 cut(s)	155, 177, 266, 326, 387, 423
DpnII	GATC	6 cut(s)	153, 175, 264, 324, 385, 421
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	62, 400
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	3 cut(s)	226, 382, 407
FaiI	YATR	7 cut(s)	44, 50, 224, 373, 380, 405, 452
FatI	CATG	3 cut(s)	222, 378, 403
FbaI	TGATCA	1 cut(s)	421
FokI	GGATG	1 cut(s)	395
FspBI	CTAG	1 cut(s)	285
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	3 cut(s)	226, 382, 407
HinfI	GANTC	4 cut(s)	86, 230, 281, 391
HpaII	CCGG	1 cut(s)	356
Hpy188I	TCNGA	5 cut(s)	160, 180, 269, 390, 435
Hpy188III	TCNNGA	3 cut(s)	7, 356, 468
Hpy99I	CGWCG	1 cut(s)	314
HpyCH4III	ACNGT	2 cut(s)	79, 310
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	226, 382, 407
Kpn2I	TCCGGA	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	6 cut(s)	153, 175, 264, 324, 385, 421
LpnPI	CCDG	8 cut(s)	158, 185, 223, 240, 247, 300, 369, 453
MaeI	CTAG	1 cut(s)	285
MalI	GATC	6 cut(s)	155, 177, 266, 326, 387, 423
MboI	GATC	6 cut(s)	153, 175, 264, 324, 385, 421
MboII	GAAGA	5 cut(s)	29, 90, 95, 128, 451
MflI	RGATCY	3 cut(s)	153, 175, 324
MluCI	AATT	4 cut(s)	52, 318, 413, 463
MnlI	CCTC	3 cut(s)	249, 270, 429
MroI	TCCGGA	1 cut(s)	355
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
NdeII	GATC	6 cut(s)	153, 175, 264, 324, 385, 421
NlaIII	CATG	3 cut(s)	226, 382, 407
NlaIV	GGNNCC	2 cut(s)	64, 177
PfeI	GAWTC	4 cut(s)	86, 230, 281, 391
PfoI	TCCNGGA	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	64, 177
PspPI	GGNCC	2 cut(s)	62, 400
PsuI	RGATCY	3 cut(s)	153, 175, 324
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
Sau3AI	GATC	6 cut(s)	153, 175, 264, 324, 385, 421
Sau96I	GGNCC	2 cut(s)	62, 400
ScaI	AGTACT	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	4 cut(s)	49, 116, 167, 297
SinI	GGWCC	2 cut(s)	62, 400
Sse9I	AATT	4 cut(s)	52, 318, 413, 463
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	79, 310
TaqI	TCGA	1 cut(s)	6
TasI	AATT	4 cut(s)	52, 318, 413, 463
TatI	WGTACW	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	86, 230, 281, 391
TscAI	CASTG	1 cut(s)	84
TspDTI	ATGAA	3 cut(s)	46, 65, 318
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	62, 400
XapI	RAATTY	2 cut(s)	52, 463
XspI	CTAG	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.