RLG00000000214

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001704
Physical Location & Seq
Reverse (-)
38987 .. 41952
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000214

Sequence Viewer

Length: 1206 bp
ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAAGCATCTGCTTCCGGAAGAAATCGAAGAATTTCTTGGGAATCCTACAAGATCCCTTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATAGTTAATATATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCAAAGGATGAACTGGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCTATTTTGTGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACCGAGCCGGATCCGTTATATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATCGAAAAAGAAATCTTTATTGGTTCTACCTCCTATTTTTTATGAAGAGAATGAATCTTTTTATCGAAGGATCAGAAAAAAATGGGTCCGGACCTCCTGCGGGAATGATTTGGAAGATCCAAAACCAAAAATAGTGAAAAAATTGTGTCTTCCACAATGGAATATGATAAGTGATATTTCGAGTAAGTGTTTACATAATCTTCTTCTGTCCGACGAAATGATTCATCGAAATAATGAGTCACCATTGATATCGACACATCTGAGATCGCCAAATGTTCGGGAGTTCCTCTATTCAATCCTTTTCCTTCTTCTTATTGCTGGATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGTTACAGACAGAGTTCGAAAGGGTCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCTCCATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTGTGGAACAATTAGGAGATTCTCTAGAAGAAATACGGGGTTCCGCTTCTGGCAGGCAACATGCTATGGGGTGGTGGTCCCGCTTATGGGGTCAAATCAATACGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

402

Amino Acids

47.24

Weight (kDa)

6.69

Isoelectric Point (pI)

62.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 244 8.9e-157 Ycf2 family
Ycf2 PF05695 245 - 388 4.7e-82 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 52, 684
AciI CCGC 3 cut(s) 696, 1140, 1177
AclWI GGATC 7 cut(s) 84, 296, 497, 510, 561, 674, 707
AcsI RAATTY 2 cut(s) 68, 1063
AfaI GTAC 1 cut(s) 931
AfiI CCNNNNNNNGG 4 cut(s) 412, 696, 1182, 1183
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 8 cut(s) 181, 250, 364, 443, 461, 571, 583, 891
AhdI GACNNNNNGTC 1 cut(s) 118
AjnI CCWGG 2 cut(s) 212, 587
AjuI GAANNNNNNNTTGG 4 cut(s) 57, 89, 599, 631
AloI GAACNNNNNNTCC 2 cut(s) 909, 941
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 7 cut(s) 84, 296, 497, 510, 561, 674, 707
Ama87I CYCGRG 1 cut(s) 951
Aor13HI TCCGGA 2 cut(s) 52, 684
ApoI RAATTY 2 cut(s) 68, 1063
Asp700I GAANNNNTTC 3 cut(s) 69, 816, 1067
AspS9I GGNCC 4 cut(s) 156, 682, 687, 1173
AsuC2I CCSGG 2 cut(s) 7, 306
AsuHPI GGTGA 1 cut(s) 828
AsuII TTCGAA 2 cut(s) 140, 981
AvaI CYCGRG 1 cut(s) 951
AvaII GGWCC 4 cut(s) 156, 682, 687, 1173
BamHI GGATCC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 737
BccI CCATC 3 cut(s) 111, 1015, 1060
BciT130I CCWGG 2 cut(s) 214, 589
BciVI GTATCC 2 cut(s) 413, 1056
BcnI CCSGG 2 cut(s) 7, 306
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 3 cut(s) 162, 1091, 1121
BfmI CTRYAG 1 cut(s) 958
BfuI GTATCC 2 cut(s) 413, 1056
BglII AGATCT 1 cut(s) 472
Bme1390I CCNGG 4 cut(s) 7, 214, 306, 589
Bme18I GGWCC 4 cut(s) 156, 682, 687, 1173
BmeRI GACNNNNNGTC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 951
BmgT120I GGNCC 4 cut(s) 156, 682, 687, 1173
BmiI GGNNCC 5 cut(s) 321, 504, 683, 1138, 1175
BmrFI CCNGG 4 cut(s) 7, 214, 306, 589
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 737
BpmI CTGGAG 1 cut(s) 571
Bpu14I TTCGAA 2 cut(s) 140, 981
BpuMI CCSGG 2 cut(s) 7, 306
BsaAI YACGTR 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 1044
BsaJI CCNNGG 1 cut(s) 588
BsaWI WCCGGW 3 cut(s) 52, 405, 684
Bsc4I CCNNNNNNNGG 4 cut(s) 412, 696, 1182, 1183
Bse1I ACTGG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 1044
BseAI TCCGGA 2 cut(s) 52, 684
BseBI CCWGG 2 cut(s) 214, 589
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 4 cut(s) 286, 314, 334, 598
BseJI GATNNNNATC 1 cut(s) 1044
BseLI CCNNNNNNNGG 4 cut(s) 412, 696, 1182, 1183
BseMII CTCAG 2 cut(s) 141, 848
BseNI ACTGG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 951
BsiSI CCGG 6 cut(s) 7, 53, 305, 406, 500, 685
BslFI GGGAC 2 cut(s) 191, 1159
BslI CCNNNNNNNGG 4 cut(s) 412, 696, 1182, 1183
BsmAI GTCTC 1 cut(s) 283
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 2 cut(s) 191, 1159
BsoBI CYCGRG 1 cut(s) 951
Bsp119I TTCGAA 2 cut(s) 140, 981
Bsp13I TCCGGA 2 cut(s) 52, 684
BspACI CCGC 3 cut(s) 696, 1140, 1177
BspCNI CTCAG 2 cut(s) 142, 849
BspEI TCCGGA 2 cut(s) 52, 684
BspLI GGNNCC 5 cut(s) 321, 504, 683, 1138, 1175
BspPI GGATC 7 cut(s) 84, 296, 497, 510, 561, 674, 707
BspT104I TTCGAA 2 cut(s) 140, 981
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 588
Bst2UI CCWGG 2 cut(s) 214, 589
Bst4CI ACNGT 2 cut(s) 277, 341
Bst6I CTCTTC 2 cut(s) 444, 636
BstBAI YACGTR 1 cut(s) 261
BstBI TTCGAA 2 cut(s) 140, 981
BstC8I GCNNGC 1 cut(s) 1151
BstDEI CTNAG 2 cut(s) 150, 857
BstF5I GGATG 4 cut(s) 286, 314, 334, 598
BstMAI GTCTC 1 cut(s) 283
BstMCI CGRYCG 1 cut(s) 221
BstNI CCWGG 2 cut(s) 214, 589
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 4 cut(s) 5, 212, 304, 587
BstSFI CTRYAG 1 cut(s) 958
BstSNI TACGTA 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 737
BstX2I RGATCY 5 cut(s) 89, 301, 472, 502, 712
BstYI RGATCY 5 cut(s) 89, 301, 472, 502, 712
BsuI GTATCC 2 cut(s) 413, 1056
BtsCI GGATG 4 cut(s) 286, 314, 334, 598
Cac8I GCNNGC 1 cut(s) 1151
Cfr13I GGNCC 4 cut(s) 156, 682, 687, 1173
Csp6I GTAC 1 cut(s) 930
CviAII CATG 3 cut(s) 401, 1015, 1157
CviJI RGCY 3 cut(s) 10, 499, 956
CviKI_1 RGCY 3 cut(s) 10, 499, 956
CviQI GTAC 1 cut(s) 930
DdeI CTNAG 2 cut(s) 150, 857
DriI GACNNNNNGTC 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 444, 636
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 2 cut(s) 444, 636
Eco105I TACGTA 1 cut(s) 261
Eco32I GATATC 2 cut(s) 846, 920
Eco47I GGWCC 4 cut(s) 156, 682, 687, 1173
Eco88I CYCGRG 1 cut(s) 951
EcoRI GAATTC 1 cut(s) 1063
EcoRII CCWGG 2 cut(s) 212, 587
EcoRV GATATC 2 cut(s) 846, 920
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 3 cut(s) 404, 1018, 1160
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 1070, 1102
FaqI GGGAC 2 cut(s) 191, 1159
FatI CATG 3 cut(s) 400, 1014, 1156
FauI CCCGC 2 cut(s) 689, 1184
FokI GGATG 4 cut(s) 273, 321, 341, 605
FspBI CTAG 3 cut(s) 162, 1091, 1121
GsuI CTGGAG 1 cut(s) 571
HapII CCGG 6 cut(s) 7, 53, 305, 406, 500, 685
Hin1II CATG 3 cut(s) 404, 1018, 1160
HpaII CCGG 6 cut(s) 7, 53, 305, 406, 500, 685
HphI GGTGA 1 cut(s) 828
Hpy166II GTNNAC 3 cut(s) 159, 788, 932
Hpy8I GTNNAC 3 cut(s) 159, 788, 932
Hpy99I CGWCG 1 cut(s) 812
HpyAV CCTTC 4 cut(s) 104, 219, 657, 911
HpyCH4III ACNGT 2 cut(s) 277, 341
HpyCH4IV ACGT 4 cut(s) 22, 260, 425, 1199
HpyF3I CTNAG 2 cut(s) 150, 857
HpySE526I ACGT 4 cut(s) 22, 260, 425, 1199
Hsp92II CATG 3 cut(s) 404, 1018, 1160
Kpn2I TCCGGA 2 cut(s) 52, 684
LweI GCATC 1 cut(s) 52
MaeI CTAG 3 cut(s) 162, 1091, 1121
MaeII ACGT 4 cut(s) 22, 260, 425, 1199
MaeIII GTNAC 3 cut(s) 426, 834, 966
MflI RGATCY 5 cut(s) 89, 301, 472, 502, 712
MluCI AATT 8 cut(s) 68, 173, 255, 282, 563, 737, 1063, 1106
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 1 cut(s) 831
MnlI CCTC 6 cut(s) 147, 568, 636, 700, 893, 1059
MroI TCCGGA 2 cut(s) 52, 684
MroXI GAANNNNTTC 3 cut(s) 69, 816, 1067
MseI TTAA 2 cut(s) 240, 1076
MspI CCGG 6 cut(s) 7, 53, 305, 406, 500, 685
MspR9I CCNGG 4 cut(s) 7, 214, 306, 589
MvaI CCWGG 2 cut(s) 214, 589
NciI CCSGG 2 cut(s) 7, 306
NlaIII CATG 3 cut(s) 404, 1018, 1160
NlaIV GGNNCC 5 cut(s) 321, 504, 683, 1138, 1175
NmuCI GTSAC 1 cut(s) 834
NspI RCATGY 1 cut(s) 1160
NspV TTCGAA 2 cut(s) 140, 981
PaeR7I CTCGAG 1 cut(s) 951
PdmI GAANNNNTTC 3 cut(s) 69, 816, 1067
PfoI TCCNGGA 1 cut(s) 304
Ple19I CGATCG 1 cut(s) 221
PleI GAGTC 1 cut(s) 841
PpsI GAGTC 1 cut(s) 841
Ppu21I YACGTR 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 212, 587
PspGI CCWGG 2 cut(s) 212, 587
PspN4I GGNNCC 5 cut(s) 321, 504, 683, 1138, 1175
PspPI GGNCC 4 cut(s) 156, 682, 687, 1173
PsuI RGATCY 5 cut(s) 89, 301, 472, 502, 712
PvuI CGATCG 1 cut(s) 221
RsaI GTAC 1 cut(s) 931
RsaNI GTAC 1 cut(s) 930
SaqAI TTAA 2 cut(s) 240, 1076
Sau96I GGNCC 4 cut(s) 156, 682, 687, 1173
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 4 cut(s) 7, 214, 306, 589
SetI ASST 9 cut(s) 25, 158, 263, 428, 579, 628, 692, 1046, 1202
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 958
Sfr274I CTCGAG 1 cut(s) 951
SfuI TTCGAA 2 cut(s) 140, 981
SinI GGWCC 4 cut(s) 156, 682, 687, 1173
SlaI CTCGAG 1 cut(s) 951
SmlI CTYRAG 1 cut(s) 951
SmoI CTYRAG 1 cut(s) 951
SnaBI TACGTA 1 cut(s) 261
Sse9I AATT 8 cut(s) 68, 173, 255, 282, 563, 737, 1063, 1106
SsiI CCGC 3 cut(s) 696, 1140, 1177
SspMI CTAG 3 cut(s) 162, 1091, 1121
StyD4I CCNGG 4 cut(s) 5, 212, 304, 587
TaaI ACNGT 2 cut(s) 277, 341
TaiI ACGT 4 cut(s) 25, 263, 428, 1202
TaqI TCGA 9 cut(s) 63, 140, 599, 661, 776, 823, 848, 952, 981
TasI AATT 8 cut(s) 68, 173, 255, 282, 563, 737, 1063, 1106
Tru1I TTAA 2 cut(s) 240, 1076
Tru9I TTAA 2 cut(s) 240, 1076
TseFI GTSAC 1 cut(s) 834
Tsp45I GTSAC 1 cut(s) 834
TspGWI ACGGA 3 cut(s) 32, 495, 561
VpaK11BI GGWCC 4 cut(s) 156, 682, 687, 1173
XapI RAATTY 2 cut(s) 68, 1063
XbaI TCTAGA 1 cut(s) 1120
XceI RCATGY 1 cut(s) 1160
XhoI CTCGAG 1 cut(s) 951
XmnI GAANNNNTTC 3 cut(s) 69, 816, 1067
XspI CTAG 3 cut(s) 162, 1091, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.