RLG00000016742

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001704
Physical Location & Seq
Forward (+)
9629748 .. 9630248
501 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016742

Sequence Viewer

Length: 501 bp
ATGGTCAAGAGAAAAAATCTCTATTTGACAGGGCTTCTTCCTATACCTATGAATTTCATTGGACCCATAAATGATACAGTGGAAGAATCTTTTGGGTCTACAAATATCAATAGGTTGATTGTTTCGCTCCCGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCTGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTTGCGGTGGTGGTGGAATTGGATCAGAAAAAAGAGGGATTCTAGTTGTAAGCTATCTAATGAAACCGTCGCTGGAATTGAGATCTCATTCAAAGAGAAAGATATCAAATATCCGGAGTTTCTTTTTGTATATTATATGGATGATCCGATTCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGCGAAACATACTCAACTTGAATTCGGGACAGCTATTCGAAATCTTAGTGAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF825

Protein Analysis

167

Amino Acids

19.7

Weight (kDa)

9.22

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 166 9.7e-101 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 98
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 1 cut(s) 247
AclWI GGATC 3 cut(s) 183, 272, 380
AcsI RAATTY 2 cut(s) 52, 463
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 2 cut(s) 334, 463
AjnI CCWGG 1 cut(s) 171
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 3 cut(s) 165, 295, 475
AluI AGCT 3 cut(s) 165, 295, 475
AlwI GGATC 3 cut(s) 183, 272, 380
Aor13HI TCCGGA 1 cut(s) 355
ApoI RAATTY 2 cut(s) 52, 463
AspS9I GGNCC 2 cut(s) 62, 400
AsuII TTCGAA 1 cut(s) 480
AvaII GGWCC 2 cut(s) 62, 400
BciT130I CCWGG 1 cut(s) 173
BfaI CTAG 2 cut(s) 285, 499
BglII AGATCT 2 cut(s) 153, 324
BmcAI AGTACT 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 2 cut(s) 62, 400
BmgT120I GGNCC 2 cut(s) 62, 400
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 247
Bpu14I TTCGAA 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 434
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 242
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 356
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 483
Bsp119I TTCGAA 1 cut(s) 480
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 6 cut(s) 153, 175, 264, 324, 385, 421
BspACI CCGC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 3 cut(s) 183, 272, 380
BspT104I TTCGAA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 6 cut(s) 153, 175, 264, 324, 385, 421
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 79, 310
Bst6I CTCTTC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 480
BstDEI CTNAG 2 cut(s) 159, 487
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 6 cut(s) 156, 178, 267, 327, 388, 424
BstMBI GATC 6 cut(s) 153, 175, 264, 324, 385, 421
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstX2I RGATCY 3 cut(s) 153, 175, 324
BstYI RGATCY 3 cut(s) 153, 175, 324
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 62, 400
Csp6I GTAC 1 cut(s) 189
CviAII CATG 2 cut(s) 223, 404
CviJI RGCY 4 cut(s) 34, 165, 295, 475
CviKI_1 RGCY 4 cut(s) 34, 165, 295, 475
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 159, 487
DpnI GATC 6 cut(s) 155, 177, 266, 326, 387, 423
DpnII GATC 6 cut(s) 153, 175, 264, 324, 385, 421
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 62, 400
EcoRI GAATTC 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 346
FaeI CATG 2 cut(s) 226, 407
FaiI YATR 9 cut(s) 44, 50, 68, 224, 373, 378, 380, 405, 452
FaqI GGGAC 1 cut(s) 483
FatI CATG 2 cut(s) 222, 403
FblI GTMKAC 1 cut(s) 98
FokI GGATG 1 cut(s) 395
FspBI CTAG 2 cut(s) 285, 499
HapII CCGG 1 cut(s) 356
Hin1II CATG 2 cut(s) 226, 407
HinfI GANTC 4 cut(s) 86, 230, 281, 391
HpaII CCGG 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 5 cut(s) 160, 180, 269, 390, 435
Hpy188III TCNNGA 3 cut(s) 7, 356, 468
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 314
HpyCH4III ACNGT 2 cut(s) 79, 310
HpyF3I CTNAG 2 cut(s) 159, 487
Hsp92II CATG 2 cut(s) 226, 407
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 6 cut(s) 153, 175, 264, 324, 385, 421
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 7 cut(s) 15, 158, 185, 223, 240, 300, 369
MaeI CTAG 2 cut(s) 285, 499
MalI GATC 6 cut(s) 155, 177, 266, 326, 387, 423
MboI GATC 6 cut(s) 153, 175, 264, 324, 385, 421
MboII GAAGA 4 cut(s) 29, 95, 128, 451
MflI RGATCY 3 cut(s) 153, 175, 324
MluCI AATT 5 cut(s) 52, 259, 318, 413, 463
MnlI CCTC 3 cut(s) 270, 429, 435
MroI TCCGGA 1 cut(s) 355
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
NdeII GATC 6 cut(s) 153, 175, 264, 324, 385, 421
NlaIII CATG 2 cut(s) 226, 407
NlaIV GGNNCC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 480
PfeI GAWTC 4 cut(s) 86, 230, 281, 391
PfoI TCCNGGA 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 62, 400
PsuI RGATCY 3 cut(s) 153, 175, 324
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
Sau3AI GATC 6 cut(s) 153, 175, 264, 324, 385, 421
Sau96I GGNCC 2 cut(s) 62, 400
ScaI AGTACT 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 173
SetI ASST 5 cut(s) 49, 116, 167, 297, 477
SfuI TTCGAA 1 cut(s) 480
SinI GGWCC 2 cut(s) 62, 400
Sse9I AATT 5 cut(s) 52, 259, 318, 413, 463
SsiI CCGC 1 cut(s) 247
SspMI CTAG 2 cut(s) 285, 499
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 79, 310
TaqI TCGA 1 cut(s) 480
TasI AATT 5 cut(s) 52, 259, 318, 413, 463
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 4 cut(s) 86, 230, 281, 391
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 3 cut(s) 46, 65, 318
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 62, 400
XapI RAATTY 2 cut(s) 52, 463
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 2 cut(s) 285, 499
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.