function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00860 ATCG01280 |
| fragaria_vesca | FvH4_c3g00160 |
| malus_domestica | MD15G1364000.v1.1 MD15G1364100.v1.1 MD15G1364300.v1.1 |
| pyrus_communis | pycom11g21060 pycom12397g00050 pycom12397g00150 pycom13g12670 pycom13g17800 pycom1682g00010 pycom3137g00010 pycom3137g00020 |
| rosa_chinensis | RchiOBHm_Chr2g0118461 RchiOBHm_Chr2g0118471 |
| rosa_laevigata | RLG00000000001 RLG00000000007 RLG00000000030 RLG00000000031 RLG00000000036 RLG00000000037 RLG00000000059 RLG00000000060 RLG00000000094 RLG00000000095 RLG00000000101 RLG00000000102 RLG00000000181 RLG00000000182 RLG00000000214 RLG00000000215 RLG00000000239 RLG00000000254 RLG00000000255 RLG00000000301 RLG00000000305 RLG00000000306 RLG00000016742 RLG00000029142 RLG00000037092 RLG00000037093 RLG00000037098 RLG00000037099 RLG00000037112 |
| rosa_rugosa | RorugMtG0003000.1 RorugMtG0003400.1 |
| rosa_samantha | Rh1BG209600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 375 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AgsI | TTSAA | 6 cut(s) | 94, 146, 160, 169, 253, 328 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 173 |
| AspS9I | GGNCC | 1 cut(s) | 98 |
| AvaII | GGWCC | 1 cut(s) | 98 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 251, 284 |
| BauI | CACGAG | 1 cut(s) | 332 |
| BbsI | GAAGAC | 1 cut(s) | 134 |
| BclI | TGATCA | 3 cut(s) | 106, 187, 219 |
| BfaI | CTAG | 1 cut(s) | 291 |
| Bme18I | GGWCC | 1 cut(s) | 98 |
| BmgT120I | GGNCC | 1 cut(s) | 98 |
| BmiI | GGNNCC | 1 cut(s) | 41 |
| BpiI | GAAGAC | 1 cut(s) | 134 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| Bse1I | ACTGG | 2 cut(s) | 43, 186 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseGI | GGATG | 2 cut(s) | 190, 276 |
| BseNI | ACTGG | 2 cut(s) | 43, 186 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| Bsp143I | GATC | 6 cut(s) | 30, 106, 187, 219, 306, 310 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 190 |
| BspLI | GGNNCC | 1 cut(s) | 41 |
| BsrI | ACTGG | 2 cut(s) | 43, 186 |
| BssMI | GATC | 6 cut(s) | 30, 106, 187, 219, 306, 310 |
| BssSI | CACGAG | 1 cut(s) | 332 |
| Bst2BI | CACGAG | 1 cut(s) | 332 |
| BstF5I | GGATG | 2 cut(s) | 190, 276 |
| BstKTI | GATC | 6 cut(s) | 33, 109, 190, 222, 309, 313 |
| BstMBI | GATC | 6 cut(s) | 30, 106, 187, 219, 306, 310 |
| BstV2I | GAAGAC | 1 cut(s) | 134 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtsCI | GGATG | 2 cut(s) | 190, 276 |
| CciI | TCATGA | 1 cut(s) | 190 |
| Cfr13I | GGNCC | 1 cut(s) | 98 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CviAII | CATG | 2 cut(s) | 28, 191 |
| CviJI | RGCY | 2 cut(s) | 7, 70 |
| CviKI_1 | RGCY | 2 cut(s) | 7, 70 |
| DpnI | GATC | 6 cut(s) | 32, 108, 189, 221, 308, 312 |
| DpnII | GATC | 6 cut(s) | 30, 106, 187, 219, 306, 310 |
| Eco32I | GATATC | 1 cut(s) | 363 |
| Eco47I | GGWCC | 1 cut(s) | 98 |
| EcoRV | GATATC | 1 cut(s) | 363 |
| FaeI | CATG | 2 cut(s) | 31, 194 |
| FaiI | YATR | 8 cut(s) | 15, 20, 29, 87, 192, 288, 348, 375 |
| FatI | CATG | 2 cut(s) | 27, 190 |
| FbaI | TGATCA | 3 cut(s) | 106, 187, 219 |
| FokI | GGATG | 2 cut(s) | 197, 283 |
| FspBI | CTAG | 1 cut(s) | 291 |
| Hin1II | CATG | 2 cut(s) | 31, 194 |
| HinfI | GANTC | 4 cut(s) | 75, 131, 278, 328 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 217, 314, 334 |
| HpyAV | CCTTC | 1 cut(s) | 184 |
| Hsp92II | CATG | 2 cut(s) | 31, 194 |
| Ksp22I | TGATCA | 3 cut(s) | 106, 187, 219 |
| Kzo9I | GATC | 6 cut(s) | 30, 106, 187, 219, 306, 310 |
| LpnPI | CCDG | 3 cut(s) | 21, 56, 167 |
| MaeI | CTAG | 1 cut(s) | 291 |
| MalI | GATC | 6 cut(s) | 32, 108, 189, 221, 308, 312 |
| MboI | GATC | 6 cut(s) | 30, 106, 187, 219, 306, 310 |
| MboII | GAAGA | 2 cut(s) | 134, 357 |
| MfeI | CAATTG | 1 cut(s) | 319 |
| MluCI | AATT | 5 cut(s) | 89, 147, 164, 212, 319 |
| MlyI | GAGTC | 1 cut(s) | 272 |
| MnlI | CCTC | 1 cut(s) | 221 |
| MroXI | GAANNNNTTC | 1 cut(s) | 173 |
| MslI | CAYNNNNRTG | 1 cut(s) | 84 |
| MunI | CAATTG | 1 cut(s) | 319 |
| NdeII | GATC | 6 cut(s) | 30, 106, 187, 219, 306, 310 |
| NlaIII | CATG | 2 cut(s) | 31, 194 |
| NlaIV | GGNNCC | 1 cut(s) | 41 |
| PagI | TCATGA | 1 cut(s) | 190 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 30 |
| PdmI | GAANNNNTTC | 1 cut(s) | 173 |
| PfeI | GAWTC | 3 cut(s) | 75, 131, 328 |
| PleI | GAGTC | 1 cut(s) | 272 |
| PpsI | GAGTC | 1 cut(s) | 272 |
| PsiI | TTATAA | 1 cut(s) | 375 |
| PspN4I | GGNNCC | 1 cut(s) | 41 |
| PspPI | GGNCC | 1 cut(s) | 98 |
| RseI | CAYNNNNRTG | 1 cut(s) | 84 |
| Sau3AI | GATC | 6 cut(s) | 30, 106, 187, 219, 306, 310 |
| Sau96I | GGNCC | 1 cut(s) | 98 |
| SchI | GAGTC | 1 cut(s) | 272 |
| SetI | ASST | 3 cut(s) | 41, 100, 142 |
| SinI | GGWCC | 1 cut(s) | 98 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 84 |
| Sse9I | AATT | 5 cut(s) | 89, 147, 164, 212, 319 |
| SspMI | CTAG | 1 cut(s) | 291 |
| TaqI | TCGA | 3 cut(s) | 33, 309, 385 |
| TasI | AATT | 5 cut(s) | 89, 147, 164, 212, 319 |
| TfiI | GAWTC | 3 cut(s) | 75, 131, 328 |
| TspDTI | ATGAA | 5 cut(s) | 17, 102, 143, 335, 345 |
| VpaK11BI | GGWCC | 1 cut(s) | 98 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 173 |
| XspI | CTAG | 1 cut(s) | 291 |