Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001704

Physical Location & Seq

Genomic Coordinates Forward (+)

207763 .. 208466

Gene Structure 704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAAGCATCTGCTTCCGGAAGAAATCGAAGAATTTCTTGGGAATCCTACAAGATCCCTTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATAGTTAATATATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCAAAGGATGAACTGGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCTATTTTGTGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACCGAGCCGGATCCGTTATATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAATGAGGATCAGAAAAAAATGGGTCCGGACCTCCTGCGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA DUF825

Protein Analysis

205

Amino Acids

24.02

Weight (kDa)

5.53

Isoelectric Point (pI)

68.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf2	PF05695	1 - 192	3.1e-122	Ycf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00860 ATCG01280
fragaria_vesca	FvH4_c3g00160
malus_domestica	MD15G1364000.v1.1 MD15G1364100.v1.1 MD15G1364300.v1.1
pyrus_communis	pycom11g21060 pycom12397g00050 pycom12397g00150 pycom13g12670 pycom13g17800 pycom1682g00010 pycom3137g00010 pycom3137g00020
rosa_chinensis	RchiOBHm_Chr2g0118461 RchiOBHm_Chr2g0118471
rosa_laevigata	RLG00000000001 RLG00000000007 RLG00000000030 RLG00000000031 RLG00000000036 RLG00000000037 RLG00000000059 RLG00000000060 RLG00000000094 RLG00000000095 RLG00000000101 RLG00000000102 RLG00000000181 RLG00000000182 RLG00000000214 RLG00000000215 RLG00000000239 RLG00000000254 RLG00000000255 RLG00000000301 RLG00000000305 RLG00000000306 RLG00000016742 RLG00000029142 RLG00000037092 RLG00000037093 RLG00000037098 RLG00000037099 RLG00000037112
rosa_rugosa	RorugMtG0003000.1 RorugMtG0003400.1
rosa_samantha	Rh1BG209600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	52, 595
AciI	CCGC	1 cut(s)	607
AclWI	GGATC	6 cut(s)	84, 296, 497, 510, 561, 585
AcsI	RAATTY	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	412, 607
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	6 cut(s)	181, 250, 364, 443, 461, 571
AhdI	GACNNNNNGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	6 cut(s)	84, 296, 497, 510, 561, 585
Aor13HI	TCCGGA	2 cut(s)	52, 595
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	69
AspS9I	GGNCC	3 cut(s)	156, 593, 598
AsuC2I	CCSGG	2 cut(s)	7, 306
AsuII	TTCGAA	1 cut(s)	140
AvaII	GGWCC	3 cut(s)	156, 593, 598
BamHI	GGATCC	1 cut(s)	502
BccI	CCATC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	2 cut(s)	7, 306
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	7, 214, 306
Bme18I	GGWCC	3 cut(s)	156, 593, 598
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	156, 593, 598
BmiI	GGNNCC	3 cut(s)	321, 504, 594
BmrFI	CCNGG	3 cut(s)	7, 214, 306
BmsI	GCATC	1 cut(s)	52
Bpu14I	TTCGAA	1 cut(s)	140
BpuMI	CCSGG	2 cut(s)	7, 306
BsaAI	YACGTR	1 cut(s)	261
BsaWI	WCCGGW	3 cut(s)	52, 405, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 607
Bse1I	ACTGG	1 cut(s)	339
BseAI	TCCGGA	2 cut(s)	52, 595
BseBI	CCWGG	1 cut(s)	214
BseGI	GGATG	3 cut(s)	286, 314, 334
BseLI	CCNNNNNNNGG	2 cut(s)	412, 607
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	221
BsiSI	CCGG	6 cut(s)	7, 53, 305, 406, 500, 596
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	412, 607
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	140
Bsp13I	TCCGGA	2 cut(s)	52, 595
Bsp143I	GATC	8 cut(s)	89, 166, 218, 301, 472, 502, 553, 577
BspACI	CCGC	1 cut(s)	607
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	2 cut(s)	52, 595
BspLI	GGNNCC	3 cut(s)	321, 504, 594
BspPI	GGATC	6 cut(s)	84, 296, 497, 510, 561, 585
BspT104I	TTCGAA	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	339
BssMI	GATC	8 cut(s)	89, 166, 218, 301, 472, 502, 553, 577
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	277, 341
Bst6I	CTCTTC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	3 cut(s)	286, 314, 334
BstKTI	GATC	8 cut(s)	92, 169, 221, 304, 475, 505, 556, 580
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	8 cut(s)	89, 166, 218, 301, 472, 502, 553, 577
BstMCI	CGRYCG	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	3 cut(s)	5, 212, 304
BstSNI	TACGTA	1 cut(s)	261
BstX2I	RGATCY	4 cut(s)	89, 301, 472, 502
BstYI	RGATCY	4 cut(s)	89, 301, 472, 502
BsuI	GTATCC	1 cut(s)	413
BtsCI	GGATG	3 cut(s)	286, 314, 334
Cfr13I	GGNCC	3 cut(s)	156, 593, 598
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	2 cut(s)	10, 499
CviKI_1	RGCY	2 cut(s)	10, 499
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	8 cut(s)	91, 168, 220, 303, 474, 504, 555, 579
DpnII	GATC	8 cut(s)	89, 166, 218, 301, 472, 502, 553, 577
DriI	GACNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	444
Eam1105I	GACNNNNNGTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	444
Eco105I	TACGTA	1 cut(s)	261
Eco47I	GGWCC	3 cut(s)	156, 593, 598
EcoRII	CCWGG	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	1 cut(s)	404
FaiI	YATR	5 cut(s)	245, 317, 402, 511, 516
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	400
FauI	CCCGC	1 cut(s)	600
FokI	GGATG	3 cut(s)	273, 321, 341
FspBI	CTAG	1 cut(s)	162
HapII	CCGG	6 cut(s)	7, 53, 305, 406, 500, 596
Hin1II	CATG	1 cut(s)	404
HinfI	GANTC	4 cut(s)	79, 142, 443, 539
HpaII	CCGG	6 cut(s)	7, 53, 305, 406, 500, 596
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	7 cut(s)	112, 124, 171, 223, 301, 448, 582
Hpy188III	TCNNGA	6 cut(s)	53, 250, 361, 461, 568, 596
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	104, 219
HpyCH4III	ACNGT	2 cut(s)	277, 341
HpyCH4IV	ACGT	3 cut(s)	22, 260, 425
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	3 cut(s)	22, 260, 425
Hsp92II	CATG	1 cut(s)	404
Kpn2I	TCCGGA	2 cut(s)	52, 595
Kzo9I	GATC	8 cut(s)	89, 166, 218, 301, 472, 502, 553, 577
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	3 cut(s)	22, 260, 425
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	8 cut(s)	91, 168, 220, 303, 474, 504, 555, 579
MboI	GATC	8 cut(s)	89, 166, 218, 301, 472, 502, 553, 577
MboII	GAAGA	4 cut(s)	68, 77, 193, 461
MflI	RGATCY	4 cut(s)	89, 301, 472, 502
MluCI	AATT	5 cut(s)	68, 173, 255, 282, 563
MnlI	CCTC	3 cut(s)	147, 568, 611
MroI	TCCGGA	2 cut(s)	52, 595
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	240
MspI	CCGG	6 cut(s)	7, 53, 305, 406, 500, 596
MspR9I	CCNGG	3 cut(s)	7, 214, 306
MvaI	CCWGG	1 cut(s)	214
NciI	CCSGG	2 cut(s)	7, 306
NdeII	GATC	8 cut(s)	89, 166, 218, 301, 472, 502, 553, 577
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	3 cut(s)	321, 504, 594
NspV	TTCGAA	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	4 cut(s)	79, 142, 443, 539
PfoI	TCCNGGA	1 cut(s)	304
Ple19I	CGATCG	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	321, 504, 594
PspPI	GGNCC	3 cut(s)	156, 593, 598
PsuI	RGATCY	4 cut(s)	89, 301, 472, 502
PvuI	CGATCG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	8 cut(s)	89, 166, 218, 301, 472, 502, 553, 577
Sau96I	GGNCC	3 cut(s)	156, 593, 598
ScrFI	CCNGG	3 cut(s)	7, 214, 306
SetI	ASST	5 cut(s)	25, 158, 263, 428, 603
SfaNI	GCATC	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	140
SinI	GGWCC	3 cut(s)	156, 593, 598
SnaBI	TACGTA	1 cut(s)	261
Sse9I	AATT	5 cut(s)	68, 173, 255, 282, 563
SsiI	CCGC	1 cut(s)	607
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	5, 212, 304
TaaI	ACNGT	2 cut(s)	277, 341
TaiI	ACGT	3 cut(s)	25, 263, 428
TaqI	TCGA	2 cut(s)	63, 140
TasI	AATT	5 cut(s)	68, 173, 255, 282, 563
TfiI	GAWTC	4 cut(s)	79, 142, 443, 539
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspDTI	ATGAA	7 cut(s)	50, 119, 275, 285, 345, 345, 380
TspGWI	ACGGA	3 cut(s)	32, 495, 561
VpaK11BI	GGWCC	3 cut(s)	156, 593, 598
XapI	RAATTY	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.