pycom12397g00050

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012397
Physical Location & Seq
Forward (+)
28719 .. 33889
5171 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12397g00050.1

Sequence Viewer

Length: 5055 bp
ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAAGCATCTGCTTCCGGAAGAAATCGAAGAATTTCTTGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATAGTTAATATATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCGAAGGATGAATTGGATATGGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCCATTTTTTGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACCGAGCCGGATCTGGTGTATCATAAGGGATTTGCCTTTTCTATTGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATCGAAAAAGAAATCTTTATTGGTTCTACCTCCTATTTTTTATGAAGAGAATGAATCTTTTTATCGAAGGATCAGAAAAAAATGGGTCCGGACCTCCTGCGGGAATGATTTGGAAGATCCAAAATCAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAATCAATATAGATTGATCCGAAATCTGATTCAAATCCAATATAGCACCTATGGGTACATAAGAAATGTATTGAATCGATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTTATCAAATTTGAAAAAGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTTATTTCTCGAACCGAGAGATCCATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTACAGGAACATTTGGAACATTTCATTTCTGAGCAGAAGAGCCGTTTTCATTTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATATTGATTTTGATTGGTCTGAGGTTATCGACAAAAAAGATTTGTCTAAGTCACTTCCTTTCTTTTTGTCCAAGTTACTTCTTTTTTTGTCCAAGTTTCTTCTCTTTTTGTCTAACTCACTTCCTTTTTTCTTTGTGAGTTTTGGGAATATCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAAAAATCAAAATTCTTGATCAATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAAATAATCGCAGGAAATCTTTTGATAACATGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAATTGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAAATCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAGGATTCCCTTTTTATGTGGAAAAGGCTCGTATCAATAATTATGATTTTACGTATGGACAATTCCTCAATATCTTGTTCATTCGCAACAAAATATTTTCTTTGTGCGGCGGTAAAAAAAAATATGCTTTTTTGGAGAGAGATACTATTTCACCAATCGAGTTACAGGTGTCTAACATATTCATACCTAACGATTTTCCACAAAATGGTGACGAAAGGGATAACTTGTACAAATCTTTACATTTTCCAATTCGATCCGATCCATTCGTTCGTAGAGCTATTTACTCGATCGCAGACATTTCTGGAACACTTCTAACAGAGGGACAGATAGTCAATTTTGAAAGAACTTATTGTCAACCTCTTTCAGATATGAATCTGTCTGATTCAGAAGGGAAGAACTTGCATCAGTATCTCAATTTCAATTCAAACATGGGTTTGATTCACACTCCATGTTCTGAGAAATATTTACCATCCGAAAAGAGGAAAAAACGGGGTCTTTGTCTAAAGAAATGCCTTGAGAAAGGGCGGATGTATAGAACCTTTCAACGAGATAGTGCTTTTTCAACTCTCTCAAAATGGAATATATTCCAAACATATATGCCATGGTTCCTTACTTCGACAGGATACAAATATCTAAATTTGATATTTTTAGATACTTTTTCAGACCTATTGCCGATACTAAGTAGCAGCCAAAAATTTGTATCCATTTTTCATGATATTATGCATGGATCAGATATATCATGGCGAATTCTTCAGAAAAAATTGTGTCTTCCACAATGGAATCTGATAAGTGATATTTCGAGTAAGTGTTTACATAATCTTCTTCTGTCCGAAGAAATGATTCATCGAAATAATGAGTCACCATTGATATCGACACATCTGAGATCGCCAAATGTTCGGGAGTTCCTCTATTCAATCCTTTTCCTTCTTCTTGTTGCTGGATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGTTACAGACAGAGTTCGAAAGGGTCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCTACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCGGGAACAATTAGGAGATTCTCTAGAAGAAATACGGGCTTCTGGCGGCAACATGCTATGGGGTGGTGGTCCCGCTTATGGGGTCAAATCAATACGTTCTAAGAAGAAATATTTGAATATCAATCTCATCGATATCATCGATTTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATCCATTCATTGATAAGAAAAAGAAAAAACGTGAACGGTGATTGGATTGATGATAAAATAGAATCCTGGGTCTCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGCGATCATTTATCAAAGAATGATTCTGGTTATCAAATGATTGAACAACCGGGAGCAATTTACTTACGATACTTAGTTGACATTCATAAAAAGTATCTAATGAATTATGAGTTCAATACATCCTGTTTAGCAGAAAGACGGATATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCCTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCCTATCCCTCTCTAGGGGTATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACAGTATTTCTGAACAAGTTCCTGGCTAACAAGCCCAAGGGTTTTCTTGTTGATGATAGTGACGATATTGATGATAGCGACGATATTGATGATAGTGACGACCGTGACTTTGATACGGAGCTGGCGCTTCTAACTATGATGAATGCGCTAACTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACTCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTAAGATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACACAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAAGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACGAAGGGGATTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGATCGCTCAAGACCTTTGGTCTCTACCCCGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGCAGAAGGCGCTCCGGTGGGATCCTCACGGACAGAAAAAGATTGCAGTCAGTTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAACCAAGGAATCCCTTAGATATGATGCAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGTCCTCGACCCGCAACGGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGTCAGGTCATTTCGGGGCAAGCGGATCATTTATGATGAAGAGGATGGGCTTCAAGAGAATGATTCGGAGTTCTTGCAGACCTGTGTTTTCACATCGAGAATTCTTTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1685

Amino Acids

196.9

Weight (kDa)

8.45

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 1028 0.0 Ycf2 family
AAA PF00004 1178 - 1347 1.6e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1689
AasI GACNNNNNNGTC 1 cut(s) 3072
AccB1I GGYRCC 1 cut(s) 4878
AccB7I CCANNNNNTGG 3 cut(s) 1952, 3485, 3991
AccBSI CCGCTC 1 cut(s) 4001
AccIII TCCGGA 2 cut(s) 52, 681
AcuI CTGAAG 1 cut(s) 2483
AcyI GRCGYC 1 cut(s) 4879
AfaI GTAC 7 cut(s) 818, 1976, 2701, 4167, 4356, 4436, 4445
AflIII ACRYGT 1 cut(s) 429
AhdI GACNNNNNGTC 3 cut(s) 118, 2075, 4531
AjnI CCWGG 5 cut(s) 212, 584, 3155, 3633, 3923
AjuI GAANNNNNNNTTGG 6 cut(s) 57, 89, 317, 349, 596, 628
AloI GAACNNNNNNTCC 4 cut(s) 2679, 2711, 3905, 3937
AluBI AGCT 3 cut(s) 2024, 3733, 4010
AluI AGCT 3 cut(s) 2024, 3733, 4010
Alw26I GTCTC 5 cut(s) 283, 3058, 3166, 3837, 4539
Ama87I CYCGRG 2 cut(s) 2721, 2868
Aor13HI TCCGGA 2 cut(s) 52, 681
AoxI GGCC 4 cut(s) 4194, 4609, 4703, 4913
ApeKI GCWGC 1 cut(s) 2433
ArsI GACNNNNNNTTYG 4 cut(s) 3704, 3736, 3815, 3847
AseI ATTAAT 1 cut(s) 1161
Asp700I GAANNNNTTC 9 cut(s) 69, 839, 986, 1445, 2330, 2586, 2837, 3629, 4121
AspLEI GCGC 4 cut(s) 3739, 3760, 4631, 4881
AsuC2I CCSGG 3 cut(s) 7, 306, 3318
AsuHPI GGTGA 6 cut(s) 1503, 1890, 1967, 2598, 3140, 3793
AsuII TTCGAA 5 cut(s) 140, 873, 2751, 3813, 4449
AsuNHI GCTAGC 1 cut(s) 737
AvaI CYCGRG 2 cut(s) 2721, 2868
AvaII GGWCC 8 cut(s) 156, 679, 684, 1062, 1341, 1370, 2936, 4143
BaeI ACNNNNGTAYC 2 cut(s) 1523, 1556
BamHI GGATCC 4 cut(s) 1036, 3994, 4314, 4640
BanI GGYRCC 1 cut(s) 4878
BanII GRGCYC 1 cut(s) 4867
BbsI GAAGAC 2 cut(s) 1406, 2507
BbvI GCAGC 1 cut(s) 2445
BccI CCATC 6 cut(s) 111, 2224, 2785, 3041, 3487, 4979
BceAI ACGGC 1 cut(s) 1107
BciT130I CCWGG 5 cut(s) 214, 586, 3157, 3635, 3925
BciVI GTATCC 4 cut(s) 419, 2363, 2458, 2826
BclI TGATCA 5 cut(s) 1378, 1459, 1491, 3241, 4759
BcnI CCSGG 3 cut(s) 7, 306, 3318
BcoDI GTCTC 5 cut(s) 283, 3058, 3166, 3837, 4539
BfmI CTRYAG 2 cut(s) 2728, 3549
BfoI RGCGCY 3 cut(s) 3740, 4632, 4882
BfuI GTATCC 4 cut(s) 419, 2363, 2458, 2826
BglI GCCNNNNNGGC 1 cut(s) 4887
BglII AGATCT 3 cut(s) 478, 4171, 4250
BisI GCNGC 3 cut(s) 1855, 2434, 2914
BlpI GCTNAGC 1 cut(s) 3508
BlsI GCNGC 3 cut(s) 1856, 2435, 2915
Bme1390I CCNGG 8 cut(s) 7, 214, 306, 586, 3157, 3318, 3635, 3925
Bme18I GGWCC 8 cut(s) 156, 679, 684, 1062, 1341, 1370, 2936, 4143
BmeRI GACNNNNNGTC 3 cut(s) 118, 2075, 4531
BmeT110I CYCGRG 2 cut(s) 2721, 2868
BmrFI CCNGG 8 cut(s) 7, 214, 306, 586, 3157, 3318, 3635, 3925
BmsI GCATC 4 cut(s) 52, 2158, 3765, 4722
BmtI GCTAGC 1 cut(s) 741
BpiI GAAGAC 2 cut(s) 1406, 2507
BplI GAGNNNNNCTC 2 cut(s) 3247, 3279
BpmI CTGGAG 2 cut(s) 568, 3907
Bpu1102I GCTNAGC 1 cut(s) 3508
Bpu14I TTCGAA 5 cut(s) 140, 873, 2751, 3813, 4449
BpuEI CTTGAG 2 cut(s) 2282, 4506
BpuMI CCSGG 3 cut(s) 7, 306, 3318
Bsa29I ATCGAT 6 cut(s) 838, 1150, 2997, 3006, 4202, 4514
BsaAI YACGTR 3 cut(s) 261, 1157, 1800
BsaBI GATNNNNATC 6 cut(s) 794, 1352, 2118, 2814, 4596, 4680
BsaHI GRCGYC 1 cut(s) 4879
BsaI GGTCTC 2 cut(s) 3166, 4539
BsaJI CCNNGG 9 cut(s) 585, 2348, 3156, 3648, 3898, 3924, 4152, 4712, 4883
BsaWI WCCGGW 4 cut(s) 52, 411, 681, 4633
BsaXI ACNNNNNCTCC 2 cut(s) 3905, 3935
Bse1I ACTGG 1 cut(s) 3562
Bse3DI GCAATG 2 cut(s) 3834, 4691
Bse8I GATNNNNATC 6 cut(s) 794, 1352, 2118, 2814, 4596, 4680
BseAI TCCGGA 2 cut(s) 52, 681
BseBI CCWGG 5 cut(s) 214, 586, 3157, 3635, 3925
BseCI ATCGAT 6 cut(s) 838, 1150, 2997, 3006, 4202, 4514
BseDI CCNNGG 9 cut(s) 585, 2348, 3156, 3648, 3898, 3924, 4152, 4712, 4883
BseJI GATNNNNATC 6 cut(s) 794, 1352, 2118, 2814, 4596, 4680
BseMI GCAATG 2 cut(s) 3834, 4691
BseMII CTCAG 5 cut(s) 141, 1101, 1188, 2193, 2618
BseNI ACTGG 1 cut(s) 3562
BseRI GAGGAG 1 cut(s) 4850
BseXI GCAGC 1 cut(s) 2445
Bsh1285I CGRYCG 6 cut(s) 221, 865, 1150, 2037, 3715, 4518
BshFI GGCC 4 cut(s) 4196, 4611, 4705, 4915
BshNI GGYRCC 1 cut(s) 4878
BshVI ATCGAT 6 cut(s) 838, 1150, 2997, 3006, 4202, 4514
BsiEI CGRYCG 6 cut(s) 221, 865, 1150, 2037, 3715, 4518
BsiHKCI CYCGRG 2 cut(s) 2721, 2868
BslFI GGGAC 3 cut(s) 191, 2082, 2922
BsmAI GTCTC 5 cut(s) 283, 3058, 3166, 3837, 4539
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 3 cut(s) 191, 2082, 2922
BsmI GAATGC 1 cut(s) 3760
BsnI GGCC 4 cut(s) 4196, 4611, 4705, 4915
Bso31I GGTCTC 2 cut(s) 3166, 4539
BsoBI CYCGRG 2 cut(s) 2721, 2868
Bsp119I TTCGAA 5 cut(s) 140, 873, 2751, 3813, 4449
Bsp1286I GDGCHC 1 cut(s) 4867
Bsp13I TCCGGA 2 cut(s) 52, 681
Bsp1407I TGTACA 2 cut(s) 1974, 4434
Bsp1720I GCTNAGC 1 cut(s) 3508
Bsp19I CCATGG 2 cut(s) 2348, 4152
BspANI GGCC 4 cut(s) 4196, 4611, 4705, 4915
BspCNI CTCAG 5 cut(s) 142, 1102, 1189, 2194, 2619
BspDI ATCGAT 6 cut(s) 838, 1150, 2997, 3006, 4202, 4514
BspEI TCCGGA 2 cut(s) 52, 681
BspHI TCATGA 3 cut(s) 1462, 2458, 3862
BspOI GCTAGC 1 cut(s) 741
BspQI GCTCTTC 2 cut(s) 1112, 4263
BspT104I TTCGAA 5 cut(s) 140, 873, 2751, 3813, 4449
BspT107I GGYRCC 1 cut(s) 4878
BspTNI GGTCTC 2 cut(s) 3166, 4539
BsrBI CCGCTC 1 cut(s) 4001
BsrDI GCAATG 2 cut(s) 3834, 4691
BsrGI TGTACA 2 cut(s) 1974, 4434
BsrI ACTGG 1 cut(s) 3562
BssECI CCNNGG 9 cut(s) 585, 2348, 3156, 3648, 3898, 3924, 4152, 4712, 4883
BssNI GRCGYC 1 cut(s) 4879
BssT1I CCWWGG 5 cut(s) 2348, 3648, 4152, 4712, 4883
Bst2UI CCWGG 5 cut(s) 214, 586, 3157, 3635, 3925
Bst4CI ACNGT 6 cut(s) 277, 347, 3128, 3170, 3616, 3716
Bst6I CTCTTC 5 cut(s) 450, 633, 1112, 4263, 4974
BstACI GRCGYC 1 cut(s) 4879
BstAUI TGTACA 2 cut(s) 1974, 4434
BstBAI YACGTR 3 cut(s) 261, 1157, 1800
BstBI TTCGAA 5 cut(s) 140, 873, 2751, 3813, 4449
BstC8I GCNNGC 3 cut(s) 739, 3735, 4961
BstDSI CCRYGG 2 cut(s) 2348, 4152
BstH2I RGCGCY 3 cut(s) 3740, 4632, 4882
BstHHI GCGC 4 cut(s) 3739, 3760, 4631, 4881
BstMAI GTCTC 5 cut(s) 283, 3058, 3166, 3837, 4539
BstMCI CGRYCG 6 cut(s) 221, 865, 1150, 2037, 3715, 4518
BstMWI GCNNNNNNNGC 4 cut(s) 4007, 4628, 4702, 4887
BstNI CCWGG 5 cut(s) 214, 586, 3157, 3635, 3925
BstNSI RCATGY 2 cut(s) 2923, 4032
BstSCI CCNGG 8 cut(s) 5, 212, 304, 584, 3155, 3316, 3633, 3923
BstSFI CTRYAG 2 cut(s) 2728, 3549
BstSNI TACGTA 3 cut(s) 261, 1157, 1800
BstV1I GCAGC 1 cut(s) 2445
BstV2I GAAGAC 2 cut(s) 1406, 2507
BstXI CCANNNNNNTGG 3 cut(s) 4133, 4153, 4924
Bsu15I ATCGAT 6 cut(s) 838, 1150, 2997, 3006, 4202, 4514
BsuI GTATCC 4 cut(s) 419, 2363, 2458, 2826
BsuRI GGCC 4 cut(s) 4196, 4611, 4705, 4915
BsuTUI ATCGAT 6 cut(s) 838, 1150, 2997, 3006, 4202, 4514
BtgI CCRYGG 2 cut(s) 2348, 4152
BtsIMutI CAGTG 1 cut(s) 3175
Cac8I GCNNGC 3 cut(s) 739, 3735, 4961
CciI TCATGA 3 cut(s) 1462, 2458, 3862
CfoI GCGC 4 cut(s) 3739, 3760, 4631, 4881
ClaI ATCGAT 6 cut(s) 838, 1150, 2997, 3006, 4202, 4514
Csp6I GTAC 7 cut(s) 817, 1975, 2700, 4166, 4355, 4435, 4444
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviQI GTAC 7 cut(s) 817, 1975, 2700, 4166, 4355, 4435, 4444
DinI GGCGCC 1 cut(s) 4880
DrdI GACNNNNNNGTC 1 cut(s) 3072
DriI GACNNNNNGTC 3 cut(s) 118, 2075, 4531
DseDI GACNNNNNNGTC 1 cut(s) 3072
Eam1104I CTCTTC 5 cut(s) 450, 633, 1112, 4263, 4974
Eam1105I GACNNNNNGTC 3 cut(s) 118, 2075, 4531
EarI CTCTTC 5 cut(s) 450, 633, 1112, 4263, 4974
EciI GGCGGA 1 cut(s) 2287
Eco105I TACGTA 3 cut(s) 261, 1157, 1800
Eco130I CCWWGG 5 cut(s) 2348, 3648, 4152, 4712, 4883
Eco24I GRGCYC 1 cut(s) 4867
Eco31I GGTCTC 2 cut(s) 3166, 4539
Eco32I GATATC 5 cut(s) 1617, 1677, 2616, 2690, 3001
Eco47I GGWCC 8 cut(s) 156, 679, 684, 1062, 1341, 1370, 2936, 4143
Eco57I CTGAAG 1 cut(s) 2483
Eco88I CYCGRG 2 cut(s) 2721, 2868
EcoO109I RGGNCCY 1 cut(s) 4195
EcoRI GAATTC 5 cut(s) 882, 2493, 2833, 3197, 5040
EcoRII CCWGG 5 cut(s) 212, 584, 3155, 3633, 3923
EcoRV GATATC 5 cut(s) 1617, 1677, 2616, 2690, 3001
EcoT14I CCWWGG 5 cut(s) 2348, 3648, 4152, 4712, 4883
EcoT22I ATGCAT 3 cut(s) 1048, 2472, 4034
EcoT38I GRGCYC 1 cut(s) 4867
EgeI GGCGCC 1 cut(s) 4880
EheI GGCGCC 1 cut(s) 4880
ErhI CCWWGG 5 cut(s) 2348, 3648, 4152, 4712, 4883
Esp3I CGTCTC 1 cut(s) 283
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 2840, 2872
FaqI GGGAC 3 cut(s) 191, 2082, 2922
FauI CCCGC 4 cut(s) 686, 2947, 4006, 4830
FbaI TGATCA 5 cut(s) 1378, 1459, 1491, 3241, 4759
Fnu4HI GCNGC 3 cut(s) 1855, 2434, 2914
FriOI GRGCYC 1 cut(s) 4867
Fsp4HI GCNGC 3 cut(s) 1855, 2434, 2914
GlaI GCGC 4 cut(s) 3738, 3759, 4630, 4880
GluI GCNGC 3 cut(s) 1855, 2434, 2914
GsuI CTGGAG 2 cut(s) 568, 3907
HaeII RGCGCY 3 cut(s) 3740, 4632, 4882
HaeIII GGCC 4 cut(s) 4196, 4611, 4705, 4915
HhaI GCGC 4 cut(s) 3739, 3760, 4631, 4881
Hin1I GRCGYC 1 cut(s) 4879
Hin6I GCGC 4 cut(s) 3737, 3758, 4629, 4879
HinP1I GCGC 4 cut(s) 3737, 3758, 4629, 4879
HincII GTYRAC 2 cut(s) 2102, 3346
HindII GTYRAC 2 cut(s) 2102, 3346
HphI GGTGA 6 cut(s) 1503, 1890, 1967, 2598, 3140, 3793
Hpy166II GTNNAC 7 cut(s) 159, 2102, 2558, 2702, 3124, 3346, 3913
Hpy8I GTNNAC 7 cut(s) 159, 2102, 2558, 2702, 3124, 3346, 3913
Hpy99I CGWCG 1 cut(s) 3695
HpyCH4III ACNGT 6 cut(s) 277, 347, 3128, 3170, 3616, 3716
HpyCH4IV ACGT 7 cut(s) 22, 260, 431, 1156, 1799, 2962, 3120
HpyF10VI GCNNNNNNNGC 4 cut(s) 4007, 4628, 4702, 4887
HpySE526I ACGT 7 cut(s) 22, 260, 431, 1156, 1799, 2962, 3120
Hsp92I GRCGYC 1 cut(s) 4879
HspAI GCGC 4 cut(s) 3737, 3758, 4629, 4879
KasI GGCGCC 1 cut(s) 4878
Kpn2I TCCGGA 2 cut(s) 52, 681
Ksp22I TGATCA 5 cut(s) 1378, 1459, 1491, 3241, 4759
LguI GCTCTTC 2 cut(s) 1112, 4263
LmnI GCTCC 8 cut(s) 1071, 3320, 3507, 3730, 4015, 4376, 4636, 4870
Lsp1109I GCAGC 1 cut(s) 2445
LweI GCATC 4 cut(s) 52, 2158, 3765, 4722
MaeII ACGT 7 cut(s) 22, 260, 431, 1156, 1799, 2962, 3120
MbiI CCGCTC 1 cut(s) 4001
MfeI CAATTG 1 cut(s) 1633
MhlI GDGCHC 1 cut(s) 4867
Mly113I GGCGCC 1 cut(s) 4879
MlyI GAGTC 9 cut(s) 982, 1544, 2612, 3256, 3265, 3890, 3967, 4572, 4821
Mph1103I ATGCAT 3 cut(s) 1048, 2472, 4034
MroI TCCGGA 2 cut(s) 52, 681
MroXI GAANNNNTTC 9 cut(s) 69, 839, 986, 1445, 2330, 2586, 2837, 3629, 4121
MseI TTAA 8 cut(s) 240, 848, 1161, 2846, 3221, 4022, 4035, 4475
MslI CAYNNNNRTG 3 cut(s) 1356, 4131, 4151
MspR9I CCNGG 8 cut(s) 7, 214, 306, 586, 3157, 3318, 3635, 3925
MunI CAATTG 1 cut(s) 1633
Mva1269I GAATGC 1 cut(s) 3760
MvaI CCWGG 5 cut(s) 214, 586, 3157, 3635, 3925
MwoI GCNNNNNNNGC 4 cut(s) 4007, 4628, 4702, 4887
NarI GGCGCC 1 cut(s) 4879
NciI CCSGG 3 cut(s) 7, 306, 3318
NcoI CCATGG 2 cut(s) 2348, 4152
NheI GCTAGC 1 cut(s) 737
NmuCI GTSAC 7 cut(s) 1227, 1955, 2604, 3671, 3707, 3716, 4687
NsiI ATGCAT 3 cut(s) 1048, 2472, 4034
NspI RCATGY 2 cut(s) 2923, 4032
NspV TTCGAA 5 cut(s) 140, 873, 2751, 3813, 4449
PaeR7I CTCGAG 1 cut(s) 2721
PagI TCATGA 3 cut(s) 1462, 2458, 3862
PciSI GCTCTTC 2 cut(s) 1112, 4263
PcsI WCGNNNNNNNCGW 2 cut(s) 3003, 3059
PctI GAATGC 1 cut(s) 3760
PdmI GAANNNNTTC 9 cut(s) 69, 839, 986, 1445, 2330, 2586, 2837, 3629, 4121
PflMI CCANNNNNTGG 3 cut(s) 1952, 3485, 3991
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 3 cut(s) 1856, 2435, 2915
Ple19I CGATCG 5 cut(s) 221, 865, 1150, 2037, 4518
PleI GAGTC 9 cut(s) 981, 1544, 2611, 3256, 3264, 3889, 3967, 4572, 4820
PluTI GGCGCC 1 cut(s) 4882
PpsI GAGTC 9 cut(s) 981, 1544, 2611, 3256, 3264, 3889, 3967, 4572, 4820
Ppu21I YACGTR 3 cut(s) 261, 1157, 1800
PshBI ATTAAT 1 cut(s) 1161
PsiI TTATAA 1 cut(s) 1689
Psp6I CCWGG 5 cut(s) 212, 584, 3155, 3633, 3923
PspGI CCWGG 5 cut(s) 212, 584, 3155, 3633, 3923
PsrI GAACNNNNNNTAC 2 cut(s) 4284, 4316
PvuI CGATCG 5 cut(s) 221, 865, 1150, 2037, 4518
RsaI GTAC 7 cut(s) 818, 1976, 2701, 4167, 4356, 4436, 4445
RsaNI GTAC 7 cut(s) 817, 1975, 2700, 4166, 4355, 4435, 4444
RseI CAYNNNNRTG 3 cut(s) 1356, 4131, 4151
SapI GCTCTTC 2 cut(s) 1112, 4263
SaqAI TTAA 8 cut(s) 240, 848, 1161, 2846, 3221, 4022, 4035, 4475
SatI GCNGC 3 cut(s) 1855, 2434, 2914
SchI GAGTC 9 cut(s) 982, 1544, 2612, 3256, 3265, 3890, 3967, 4572, 4821
ScrFI CCNGG 8 cut(s) 7, 214, 306, 586, 3157, 3318, 3635, 3925
SduI GDGCHC 1 cut(s) 4867
SfaNI GCATC 4 cut(s) 52, 2158, 3765, 4722
SfcI CTRYAG 2 cut(s) 2728, 3549
SfoI GGCGCC 1 cut(s) 4880
Sfr274I CTCGAG 1 cut(s) 2721
SfuI TTCGAA 5 cut(s) 140, 873, 2751, 3813, 4449
SinI GGWCC 8 cut(s) 156, 679, 684, 1062, 1341, 1370, 2936, 4143
SlaI CTCGAG 1 cut(s) 2721
SmiMI CAYNNNNRTG 3 cut(s) 1356, 4131, 4151
SmlI CTYRAG 3 cut(s) 2261, 2721, 4521
SmoI CTYRAG 3 cut(s) 2261, 2721, 4521
SnaBI TACGTA 3 cut(s) 261, 1157, 1800
SspDI GGCGCC 1 cut(s) 4878
SspI AATATT 5 cut(s) 1169, 1842, 2210, 2978, 3955
StyD4I CCNGG 8 cut(s) 5, 212, 304, 584, 3155, 3316, 3633, 3923
StyI CCWWGG 5 cut(s) 2348, 3648, 4152, 4712, 4883
TaaI ACNGT 6 cut(s) 277, 347, 3128, 3170, 3616, 3716
TaiI ACGT 7 cut(s) 25, 263, 434, 1159, 1802, 2965, 3123
TaqII GACCGA 2 cut(s) 3804, 3890
TatI WGTACW 3 cut(s) 1974, 4354, 4434
TauI GCSGC 2 cut(s) 1857, 2916
Tru1I TTAA 8 cut(s) 240, 848, 1161, 2846, 3221, 4022, 4035, 4475
Tru9I TTAA 8 cut(s) 240, 848, 1161, 2846, 3221, 4022, 4035, 4475
TscAI CASTG 1 cut(s) 3175
TseFI GTSAC 7 cut(s) 1227, 1955, 2604, 3671, 3707, 3716, 4687
TseI GCWGC 1 cut(s) 2433
Tsp45I GTSAC 7 cut(s) 1227, 1955, 2604, 3671, 3707, 3716, 4687
TspGWI ACGGA 5 cut(s) 32, 3421, 3743, 4663, 4843
TspRI CASTG 1 cut(s) 3175
Van91I CCANNNNNTGG 3 cut(s) 1952, 3485, 3991
VpaK11BI GGWCC 8 cut(s) 156, 679, 684, 1062, 1341, 1370, 2936, 4143
VspI ATTAAT 1 cut(s) 1161
XbaI TCTAGA 1 cut(s) 2890
XceI RCATGY 2 cut(s) 2923, 4032
XhoI CTCGAG 1 cut(s) 2721
XmnI GAANNNNTTC 9 cut(s) 69, 839, 986, 1445, 2330, 2586, 2837, 3629, 4121
Zsp2I ATGCAT 3 cut(s) 1048, 2472, 4034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.