Rh1BG209600

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001704
Physical Location & Seq
Reverse (-)
32800220 .. 32806508
6289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG209600.1

Sequence Viewer

Length: 447 bp
ATGGATGATCCAATTCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGCGAAACATACTAAACTTGAATTCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGAAAAAATACCAATTGAAGCGGAGGTTTTCTTCAAACAACAAGGAGCTGGGTCAACTATTCAATCAAATGAAATTGAGCATGTTTCCCATCTCTTCTCGAGAAACAAGTGGGCTATGCAAAATTGTGCTCAATTTCATATGTGGCAATTCCGCCAAGATCTCTTCTTTAGTTGGGGGAAGAATCCGCACGAATCGGATTTTTTGAGGAACATATCGAGAGAGAATTGGTTAGACAATGTGTGGTTGGTAAACAAGGATCGGTTTTTTAGCAAGATGGGCTTGAGAATGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF825

Protein Analysis

148

Amino Acids

18.03

Weight (kDa)

7.84

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 142 5.8e-86 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 170, 301, 335
AclWI GGATC 2 cut(s) 2, 414
AcsI RAATTY 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 4 cut(s) 85, 167, 184, 212
AluBI AGCT 2 cut(s) 97, 197
AluI AGCT 2 cut(s) 97, 197
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 2 cut(s) 2, 414
Ama87I CYCGRG 1 cut(s) 247
ApoI RAATTY 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 280
BccI CCATC 2 cut(s) 246, 418
BglII AGATCT 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 125
BseYI CCCAGC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 247
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 4 cut(s) 7, 43, 307, 406
BspACI CCGC 3 cut(s) 170, 301, 335
BspPI GGATC 2 cut(s) 2, 414
BspT104I TTCGAA 1 cut(s) 102
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 4 cut(s) 7, 43, 307, 406
Bst6I CTCTTC 3 cut(s) 56, 248, 317
BstBI TTCGAA 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 10, 46, 310, 409
BstMBI GATC 4 cut(s) 7, 43, 307, 406
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 22
CviAII CATG 3 cut(s) 26, 136, 230
CviJI RGCY 5 cut(s) 97, 197, 263, 429, 440
CviKI_1 RGCY 5 cut(s) 97, 197, 263, 429, 440
DdeI CTNAG 1 cut(s) 109
DpnI GATC 4 cut(s) 9, 45, 309, 408
DpnII GATC 4 cut(s) 7, 43, 307, 406
Eam1104I CTCTTC 3 cut(s) 56, 248, 317
EarI CTCTTC 3 cut(s) 56, 248, 317
EciI GGCGGA 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 85
FaeI CATG 3 cut(s) 29, 139, 233
FaiI YATR 8 cut(s) 27, 74, 137, 231, 266, 288, 290, 362
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FaqI GGGAC 1 cut(s) 105
FatI CATG 3 cut(s) 25, 135, 229
FauNDI CATATG 1 cut(s) 288
FokI GGATG 1 cut(s) 17
GsaI CCCAGC 1 cut(s) 201
Hin1II CATG 3 cut(s) 29, 139, 233
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 2 cut(s) 331, 341
Hpy166II GTNNAC 2 cut(s) 204, 400
Hpy188I TCNGA 2 cut(s) 57, 346
Hpy188III TCNNGA 5 cut(s) 90, 149, 247, 249, 366
Hpy8I GTNNAC 2 cut(s) 204, 400
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 3 cut(s) 29, 139, 233
Kzo9I GATC 4 cut(s) 7, 43, 307, 406
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 2 cut(s) 106, 183
MalI GATC 4 cut(s) 9, 45, 309, 408
MboI GATC 4 cut(s) 7, 43, 307, 406
MboII GAAGA 5 cut(s) 73, 172, 235, 304, 340
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 9 cut(s) 12, 35, 85, 162, 222, 271, 281, 296, 373
MnlI CCTC 4 cut(s) 51, 57, 166, 348
MunI CAATTG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 426
NdeI CATATG 1 cut(s) 288
NdeII GATC 4 cut(s) 7, 43, 307, 406
NlaIII CATG 3 cut(s) 29, 139, 233
NspI RCATGY 1 cut(s) 233
NspV TTCGAA 1 cut(s) 102
PaeR7I CTCGAG 1 cut(s) 247
PfeI GAWTC 2 cut(s) 331, 341
PspFI CCCAGC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 307
Sau3AI GATC 4 cut(s) 7, 43, 307, 406
Sau96I GGNCC 1 cut(s) 22
SduI GDGCHC 1 cut(s) 280
SetI ASST 3 cut(s) 99, 177, 199
Sfr274I CTCGAG 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 102
SinI GGWCC 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 247
SmlI CTYRAG 2 cut(s) 247, 430
SmoI CTYRAG 2 cut(s) 247, 430
Sse9I AATT 9 cut(s) 12, 35, 85, 162, 222, 271, 281, 296, 373
SsiI CCGC 3 cut(s) 170, 301, 335
TaqI TCGA 3 cut(s) 102, 248, 365
TasI AATT 9 cut(s) 12, 35, 85, 162, 222, 271, 281, 296, 373
TfiI GAWTC 2 cut(s) 331, 341
TspDTI ATGAA 2 cut(s) 234, 275
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.