Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0001704

Physical Location & Seq

Genomic Coordinates Forward (+)

220118 .. 221898

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

ATGGTCGAGAGAAAAAATCTCTATTTGACAGGGCTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATACAGTGGAAGAATCTTTTGGGTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTGGTGGAGGAACTGGATCGGAAAAAAGAGGGATTCTAGTTGTAAGCTATCTAATGAAATCGTCGCTGGAATTGAGATCTCATTCAAAGAGAAAGATATCAAATATCCGGAGTTTCTTTTTGTATATTATATGGATGATCCGATTCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGCGAAACATACTCAACTTGAATTCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGAAAAAATACCAATTGAAGCGGAGGTTTTCTTCAAACAACAAGGAGCTGGGTCAACTATTCAATCAAATGAAATTGAGCATGTTTCCCATCTCTTCTCGAGAAACAAGTGGGCTATGCAAAATTGTGCTCAATTTCATATGTGGCAATTCCGCCAAGATCTCTTCTTTAGTTGGGGGAAGAATCCGCACGAATCGGATTTTTTGAGGAACATATCGAGAGAGAATTGGTTAGACAATGTGTGGTTGGTAAACAAGGATCGGTTTTTTAGCAAGGTACGGAATGTATCGTCAAATATTCAATATGATTCCACAAGATCTCGTTTTGTTCAAGTAACGGATTCTAGCCAATTGAAAGGATCCTCTGATCAATCCAGAGATCGTTTCGATTCCATTAGTAATGAGGATTCAGAATATCACACATTGATCAATCAAAGAGAGATTCAACAACTAAAAGAAAGATCGATTCTTTGGGATCCTTCTTTTCTTCAAACGGAACGAACAGAGATAGAATCAGACCGATTCCCTAAATGCCTTTCTGGATATTCCTCAATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAAGCATCTGCTTCCGGAAGAAATCGAAGAATTTCTTGGGAATCCTACAAGATCCCTTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATAGTTAATATATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCAAAGGATGAACTGGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCTATTTTGTGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACCGAGCCGGATCCGTTATATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAATGAGGATCAGAAAAAAATGGGTCCGGACCTCCTGCGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009575 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA DUF825

Protein Analysis

564

Amino Acids

66.68

Weight (kDa)

6.32

Isoelectric Point (pI)

62.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf2	PF05695	1 - 551	0.0	Ycf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00860 ATCG01280
fragaria_vesca	FvH4_c3g00160
malus_domestica	MD15G1364000.v1.1 MD15G1364100.v1.1 MD15G1364300.v1.1
pyrus_communis	pycom11g21060 pycom12397g00050 pycom12397g00150 pycom13g12670 pycom13g17800 pycom1682g00010 pycom3137g00010 pycom3137g00020
rosa_chinensis	RchiOBHm_Chr2g0118461 RchiOBHm_Chr2g0118471
rosa_laevigata	RLG00000000001 RLG00000000007 RLG00000000030 RLG00000000031 RLG00000000036 RLG00000000037 RLG00000000059 RLG00000000060 RLG00000000094 RLG00000000095 RLG00000000101 RLG00000000102 RLG00000000181 RLG00000000182 RLG00000000214 RLG00000000215 RLG00000000239 RLG00000000254 RLG00000000255 RLG00000000301 RLG00000000305 RLG00000000306 RLG00000016742 RLG00000029142 RLG00000037092 RLG00000037093 RLG00000037098 RLG00000037099 RLG00000037112
rosa_rugosa	RorugMtG0003000.1 RorugMtG0003400.1
rosa_samantha	Rh1BG209600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	247
AccIII	TCCGGA	3 cut(s)	355, 1129, 1672
AciI	CCGC	5 cut(s)	247, 548, 679, 713, 1684
AcsI	RAATTY	3 cut(s)	52, 463, 1145
AfaI	GTAC	2 cut(s)	190, 804
AfiI	CCNNNNNNNGG	3 cut(s)	409, 1489, 1684
AflIII	ACRYGT	1 cut(s)	1500
AhdI	GACNNNNNGTC	1 cut(s)	1195
AjnI	CCWGG	2 cut(s)	171, 1289
AjuI	GAANNNNNNNTTGG	4 cut(s)	75, 107, 1134, 1166
AluBI	AGCT	4 cut(s)	165, 295, 475, 575
AluI	AGCT	4 cut(s)	165, 295, 475, 575
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	1 cut(s)	1360
Ama87I	CYCGRG	1 cut(s)	625
Aor13HI	TCCGGA	3 cut(s)	355, 1129, 1672
ApoI	RAATTY	3 cut(s)	52, 463, 1145
Asp700I	GAANNNNTTC	1 cut(s)	1146
AspS9I	GGNCC	5 cut(s)	62, 400, 1233, 1670, 1675
AsuC2I	CCSGG	2 cut(s)	1084, 1383
AsuII	TTCGAA	2 cut(s)	480, 1217
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	5 cut(s)	62, 400, 1233, 1670, 1675
BamHI	GGATCC	4 cut(s)	175, 884, 1000, 1579
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	658
BccI	CCATC	2 cut(s)	624, 1188
BciT130I	CCWGG	2 cut(s)	173, 1291
BciVI	GTATCC	1 cut(s)	1490
BclI	TGATCA	2 cut(s)	892, 951
BcnI	CCSGG	2 cut(s)	1084, 1383
BcoDI	GTCTC	1 cut(s)	1360
BfaI	CTAG	3 cut(s)	285, 870, 1239
BfuI	GTATCC	1 cut(s)	1490
BglII	AGATCT	5 cut(s)	153, 324, 685, 842, 1549
BmcAI	AGTACT	1 cut(s)	190
Bme1390I	CCNGG	4 cut(s)	173, 1084, 1291, 1383
Bme18I	GGWCC	5 cut(s)	62, 400, 1233, 1670, 1675
BmeRI	GACNNNNNGTC	1 cut(s)	1195
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	5 cut(s)	62, 400, 1233, 1670, 1675
BmiI	GGNNCC	7 cut(s)	64, 177, 886, 1002, 1398, 1581, 1671
BmrFI	CCNGG	4 cut(s)	173, 1084, 1291, 1383
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	1 cut(s)	1129
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	90
Bpu14I	TTCGAA	2 cut(s)	480, 1217
BpuMI	CCSGG	2 cut(s)	1084, 1383
Bsa29I	ATCGAT	1 cut(s)	989
BsaAI	YACGTR	1 cut(s)	1338
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	4 cut(s)	355, 1129, 1482, 1672
Bsc4I	CCNNNNNNNGG	3 cut(s)	409, 1489, 1684
Bse1I	ACTGG	4 cut(s)	242, 266, 503, 1416
BseAI	TCCGGA	3 cut(s)	355, 1129, 1672
BseBI	CCWGG	2 cut(s)	173, 1291
BseCI	ATCGAT	1 cut(s)	989
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	4 cut(s)	388, 1363, 1391, 1411
BseLI	CCNNNNNNNGG	3 cut(s)	409, 1489, 1684
BseMII	CTCAG	2 cut(s)	150, 1218
BseNI	ACTGG	4 cut(s)	242, 266, 503, 1416
BseYI	CCCAGC	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	1298
BshVI	ATCGAT	1 cut(s)	989
BsiEI	CGRYCG	1 cut(s)	1298
BsiHKAI	GWGCWC	1 cut(s)	658
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	7 cut(s)	356, 1084, 1130, 1382, 1483, 1577, 1673
BslFI	GGGAC	3 cut(s)	483, 1066, 1268
BslI	CCNNNNNNNGG	3 cut(s)	409, 1489, 1684
BsmAI	GTCTC	1 cut(s)	1360
BsmBI	CGTCTC	1 cut(s)	1360
BsmFI	GGGAC	3 cut(s)	483, 1066, 1268
BsoBI	CYCGRG	1 cut(s)	625
Bsp119I	TTCGAA	2 cut(s)	480, 1217
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp13I	TCCGGA	3 cut(s)	355, 1129, 1672
BspACI	CCGC	5 cut(s)	247, 548, 679, 713, 1684
BspCNI	CTCAG	2 cut(s)	151, 1219
BspDI	ATCGAT	1 cut(s)	989
BspEI	TCCGGA	3 cut(s)	355, 1129, 1672
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	7 cut(s)	64, 177, 886, 1002, 1398, 1581, 1671
BspT104I	TTCGAA	2 cut(s)	480, 1217
BsrI	ACTGG	4 cut(s)	242, 266, 503, 1416
BssECI	CCNNGG	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	173, 1291
Bst4CI	ACNGT	3 cut(s)	79, 1354, 1418
Bst6I	CTCTTC	4 cut(s)	434, 626, 695, 1521
BstBAI	YACGTR	1 cut(s)	1338
BstBI	TTCGAA	2 cut(s)	480, 1217
BstDEI	CTNAG	3 cut(s)	159, 487, 1227
BstF5I	GGATG	4 cut(s)	388, 1363, 1391, 1411
BstFNI	CGCG	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	1360
BstMCI	CGRYCG	1 cut(s)	1298
BstNI	CCWGG	2 cut(s)	173, 1291
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	4 cut(s)	171, 1082, 1289, 1381
BstSNI	TACGTA	1 cut(s)	1338
BstUI	CGCG	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	989
BsuI	GTATCC	1 cut(s)	1490
BsuTUI	ATCGAT	1 cut(s)	989
BtsCI	GGATG	4 cut(s)	388, 1363, 1391, 1411
BtsIMutI	CAGTG	1 cut(s)	84
Cfr13I	GGNCC	5 cut(s)	62, 400, 1233, 1670, 1675
ClaI	ATCGAT	1 cut(s)	989
Csp6I	GTAC	2 cut(s)	189, 803
CviAII	CATG	5 cut(s)	223, 404, 514, 608, 1478
CviJI	RGCY	9 cut(s)	34, 165, 295, 475, 575, 641, 873, 1087, 1576
CviKI_1	RGCY	9 cut(s)	34, 165, 295, 475, 575, 641, 873, 1087, 1576
CviQI	GTAC	2 cut(s)	189, 803
DdeI	CTNAG	3 cut(s)	159, 487, 1227
DriI	GACNNNNNGTC	1 cut(s)	1195
Eam1104I	CTCTTC	4 cut(s)	434, 626, 695, 1521
Eam1105I	GACNNNNNGTC	1 cut(s)	1195
EarI	CTCTTC	4 cut(s)	434, 626, 695, 1521
EciI	GGCGGA	1 cut(s)	668
Eco105I	TACGTA	1 cut(s)	1338
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	5 cut(s)	62, 400, 1233, 1670, 1675
Eco88I	CYCGRG	1 cut(s)	625
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	171, 1289
EcoRV	GATATC	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	1360
FaeI	CATG	5 cut(s)	226, 407, 517, 611, 1481
FalI	AAGNNNNNCTT	2 cut(s)	1134, 1166
FaqI	GGGAC	3 cut(s)	483, 1066, 1268
FatI	CATG	5 cut(s)	222, 403, 513, 607, 1477
FauI	CCCGC	1 cut(s)	1677
FauNDI	CATATG	1 cut(s)	666
FbaI	TGATCA	2 cut(s)	892, 951
FokI	GGATG	4 cut(s)	395, 1350, 1398, 1418
FspBI	CTAG	3 cut(s)	285, 870, 1239
GsaI	CCCAGC	1 cut(s)	579
HapII	CCGG	7 cut(s)	356, 1084, 1130, 1382, 1483, 1577, 1673
Hin1II	CATG	5 cut(s)	226, 407, 517, 611, 1481
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HpaII	CCGG	7 cut(s)	356, 1084, 1130, 1382, 1483, 1577, 1673
Hpy166II	GTNNAC	3 cut(s)	582, 778, 1236
Hpy8I	GTNNAC	3 cut(s)	582, 778, 1236
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	1014, 1181, 1296
HpyCH4III	ACNGT	3 cut(s)	79, 1354, 1418
HpyCH4IV	ACGT	3 cut(s)	1099, 1337, 1502
HpyCH4V	TGCA	1 cut(s)	646
HpyF3I	CTNAG	3 cut(s)	159, 487, 1227
HpySE526I	ACGT	3 cut(s)	1099, 1337, 1502
Hsp92II	CATG	5 cut(s)	226, 407, 517, 611, 1481
Kpn2I	TCCGGA	3 cut(s)	355, 1129, 1672
Ksp22I	TGATCA	2 cut(s)	892, 951
LmnI	GCTCC	2 cut(s)	132, 572
LweI	GCATC	1 cut(s)	1129
MaeI	CTAG	3 cut(s)	285, 870, 1239
MaeII	ACGT	3 cut(s)	1099, 1337, 1502
MaeIII	GTNAC	2 cut(s)	859, 1503
MfeI	CAATTG	2 cut(s)	540, 875
MhlI	GDGCHC	1 cut(s)	658
MroI	TCCGGA	3 cut(s)	355, 1129, 1672
MroXI	GAANNNNTTC	1 cut(s)	1146
MseI	TTAA	1 cut(s)	1317
MspI	CCGG	7 cut(s)	356, 1084, 1130, 1382, 1483, 1577, 1673
MspR9I	CCNGG	4 cut(s)	173, 1084, 1291, 1383
MunI	CAATTG	2 cut(s)	540, 875
MvaI	CCWGG	2 cut(s)	173, 1291
MvnI	CGCG	1 cut(s)	247
NciI	CCSGG	2 cut(s)	1084, 1383
NdeI	CATATG	1 cut(s)	666
NlaIII	CATG	5 cut(s)	226, 407, 517, 611, 1481
NlaIV	GGNNCC	7 cut(s)	64, 177, 886, 1002, 1398, 1581, 1671
NspI	RCATGY	1 cut(s)	611
NspV	TTCGAA	2 cut(s)	480, 1217
PaeR7I	CTCGAG	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	1146
PfoI	TCCNGGA	2 cut(s)	171, 1381
Ple19I	CGATCG	1 cut(s)	1298
Ppu21I	YACGTR	1 cut(s)	1338
Psp6I	CCWGG	2 cut(s)	171, 1289
PspFI	CCCAGC	1 cut(s)	575
PspGI	CCWGG	2 cut(s)	171, 1289
PspN4I	GGNNCC	7 cut(s)	64, 177, 886, 1002, 1398, 1581, 1671
PspPI	GGNCC	5 cut(s)	62, 400, 1233, 1670, 1675
PvuI	CGATCG	1 cut(s)	1298
RsaI	GTAC	2 cut(s)	190, 804
RsaNI	GTAC	2 cut(s)	189, 803
SaqAI	TTAA	1 cut(s)	1317
Sau96I	GGNCC	5 cut(s)	62, 400, 1233, 1670, 1675
ScaI	AGTACT	1 cut(s)	190
ScrFI	CCNGG	4 cut(s)	173, 1084, 1291, 1383
SduI	GDGCHC	1 cut(s)	658
SfaNI	GCATC	1 cut(s)	1129
Sfr274I	CTCGAG	1 cut(s)	625
SfuI	TTCGAA	2 cut(s)	480, 1217
SinI	GGWCC	5 cut(s)	62, 400, 1233, 1670, 1675
SlaI	CTCGAG	1 cut(s)	625
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
SnaBI	TACGTA	1 cut(s)	1338
SsiI	CCGC	5 cut(s)	247, 548, 679, 713, 1684
SspI	AATATT	1 cut(s)	823
SspMI	CTAG	3 cut(s)	285, 870, 1239
StyD4I	CCNGG	4 cut(s)	171, 1082, 1289, 1381
TaaI	ACNGT	3 cut(s)	79, 1354, 1418
TaiI	ACGT	3 cut(s)	1102, 1340, 1505
TaqI	TCGA	8 cut(s)	6, 480, 626, 743, 912, 989, 1140, 1217
TaqII	GACCGA	1 cut(s)	1059
TatI	WGTACW	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	1317
Tru9I	TTAA	1 cut(s)	1317
TscAI	CASTG	1 cut(s)	84
TspGWI	ACGGA	6 cut(s)	820, 878, 1034, 1109, 1572, 1638
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	5 cut(s)	62, 400, 1233, 1670, 1675
XapI	RAATTY	3 cut(s)	52, 463, 1145
XceI	RCATGY	1 cut(s)	611
XhoI	CTCGAG	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	1146
XspI	CTAG	3 cut(s)	285, 870, 1239
ZrmI	AGTACT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.