Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

25334746 .. 25336347

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGAGGCAGAAGAAAGCTGCTGCAGCTGGAAGAAGAGCGATCTGGTGGTGGAGGTGGAGGTGGTGTTTCACAGCCATCTTGTCAAGCGGAAAGGTGCGGGGTTGATTTGGTTGATGCAAAGAGGTACCACCGCCGGCATAAGGTTTGTGAGTTTCATTCGAAGGCAGCTGTTGTGATTGTTTCCGGGACTCGACAGCGGTTTTGTCAGCAATGCAGCAGGTTCCATGAGCTAATCGAATTTGATGAAGCAAAGAGAAGCTGTCGCCGGCGTCTGGCAGGACACAATGAGCGACGCCGCAAGAGCTCAGGCGAACCTTATGGAGAAAGCTCGAGCCGGAGAGGGGTTGGTCACCAATACAACGAAAGTCAGACTAGATATCAGATCACGCCCCCAGGAAACTCTTCCTCCAAGCGTTGCCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

144

Amino Acids

16.29

Weight (kDa)

10.24

Isoelectric Point (pI)

87.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	28 - 101	6e-32	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	5 cut(s)	89, 99, 133, 199, 298
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	2 cut(s)	271, 295
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	142, 274, 343
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	7 cut(s)	19, 28, 170, 232, 261, 306, 330
AluI	AGCT	7 cut(s)	19, 28, 170, 232, 261, 306, 330
Alw21I	GWGCWC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	331
ApeKI	GCWGC	5 cut(s)	19, 22, 25, 167, 216
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
Asp700I	GAANNNNTTC	1 cut(s)	403
Asp718I	GGTACC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	5 cut(s)	6, 9, 37, 179, 228
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	187
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	6 cut(s)	20, 23, 26, 168, 217, 298
BlsI	GCNGC	6 cut(s)	21, 24, 27, 169, 218, 299
Bme1390I	CCNGG	2 cut(s)	187, 396
BmeT110I	CYCGRG	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	128, 224
BmrFI	CCNGG	2 cut(s)	187, 396
BmsI	GCATC	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	307
Bpu14I	TTCGAA	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	187
BsaHI	GRCGYC	2 cut(s)	271, 295
BsaJI	CCNNGG	1 cut(s)	394
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 274, 343
Bse118I	RCCGGY	2 cut(s)	135, 267
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	394
BseLI	CCNNNNNNNGG	3 cut(s)	142, 274, 343
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	321
BseXI	GCAGC	5 cut(s)	6, 9, 37, 179, 228
BshNI	GGYRCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	331
BsiSI	CCGG	4 cut(s)	136, 186, 268, 337
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	142, 274, 343
BsmFI	GGGAC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	331
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	41, 384, 423
BspACI	CCGC	5 cut(s)	89, 99, 133, 199, 298
BspCNI	CTCAG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	128, 224
BspMAI	CTGCAG	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	210
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	218
BsrFI	RCCGGY	2 cut(s)	135, 267
BssAI	RCCGGY	2 cut(s)	135, 267
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	3 cut(s)	41, 384, 423
BssNI	GRCGYC	2 cut(s)	271, 295
Bst2UI	CCWGG	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	30, 409
BstACI	GRCGYC	2 cut(s)	271, 295
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	137, 269
BstDEI	CTNAG	1 cut(s)	307
BstEII	GGTNACC	1 cut(s)	350
BstKTI	GATC	3 cut(s)	44, 387, 426
BstMBI	GATC	3 cut(s)	41, 384, 423
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 303
BstNI	CCWGG	1 cut(s)	396
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	185, 394
BstSFI	CTRYAG	1 cut(s)	23
BstV1I	GCAGC	5 cut(s)	6, 9, 37, 179, 228
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	137, 269
Cfr10I	RCCGGY	2 cut(s)	135, 267
CseI	GACGC	2 cut(s)	260, 303
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	9 cut(s)	19, 28, 76, 170, 232, 261, 306, 330, 336
CviKI_1	RGCY	9 cut(s)	19, 28, 76, 170, 232, 261, 306, 330, 336
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	3 cut(s)	43, 386, 425
DpnII	GATC	3 cut(s)	41, 384, 423
Eam1104I	CTCTTC	2 cut(s)	30, 409
EarI	CTCTTC	2 cut(s)	30, 409
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	306
EcoO65I	GGTNACC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	394
EcoRV	GATATC	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	1 cut(s)	230
FaiI	YATR	3 cut(s)	141, 228, 321
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	6 cut(s)	20, 23, 26, 168, 217, 298
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	6 cut(s)	20, 23, 26, 168, 217, 298
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	6 cut(s)	20, 23, 26, 168, 217, 298
HapII	CCGG	4 cut(s)	136, 186, 268, 337
HgaI	GACGC	2 cut(s)	260, 303
Hin1I	GRCGYC	2 cut(s)	271, 295
Hin1II	CATG	1 cut(s)	230
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	4 cut(s)	136, 186, 268, 337
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	3 cut(s)	372, 384, 428
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	25, 119, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 303
HpyF3I	CTNAG	1 cut(s)	307
Hsp92I	GRCGYC	2 cut(s)	271, 295
Hsp92II	CATG	1 cut(s)	230
KpnI	GGTACC	1 cut(s)	130
KroI	GCCGGC	2 cut(s)	135, 267
KroNI	GCCGGC	2 cut(s)	137, 269
Kzo9I	GATC	3 cut(s)	41, 384, 423
LguI	GCTCTTC	1 cut(s)	30
Lsp1109I	GCAGC	5 cut(s)	6, 9, 37, 179, 228
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	3 cut(s)	43, 386, 425
MboI	GATC	3 cut(s)	41, 384, 423
MboII	GAAGA	4 cut(s)	24, 44, 47, 396
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	47, 53, 117, 335, 418
MreI	CGCCGGCG	1 cut(s)	267
MroNI	GCCGGC	2 cut(s)	135, 267
MroXI	GAANNNNTTC	1 cut(s)	403
MspA1I	CMGCKG	3 cut(s)	28, 170, 199
MspI	CCGG	4 cut(s)	136, 186, 268, 337
MspR9I	CCNGG	2 cut(s)	187, 396
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	25, 303
NaeI	GCCGGC	2 cut(s)	137, 269
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	41, 384, 423
NgoMIV	GCCGGC	2 cut(s)	135, 267
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	128, 224
NmuCI	GTSAC	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	161
PaeR7I	CTCGAG	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	30
PdiI	GCCGGC	2 cut(s)	137, 269
PdmI	GAANNNNTTC	1 cut(s)	403
PfoI	TCCNGGA	1 cut(s)	185
PkrI	GCNGC	6 cut(s)	21, 24, 27, 169, 218, 299
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	394
PspEI	GGTNACC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	128, 224
PspXI	VCTCGAGB	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	27
PvuII	CAGCTG	2 cut(s)	28, 170
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	30
SatI	GCNGC	6 cut(s)	20, 23, 26, 168, 217, 298
Sau3AI	GATC	3 cut(s)	41, 384, 423
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	2 cut(s)	187, 396
SduI	GDGCHC	1 cut(s)	308
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	161
SgrAI	CRCCGGYG	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	5 cut(s)	89, 99, 133, 199, 298
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	185, 394
TaqI	TCGA	4 cut(s)	161, 193, 237, 332
TasI	AATT	1 cut(s)	239
TauI	GCSGC	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	5 cut(s)	19, 22, 25, 167, 216
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	146, 261
XapI	RAATTY	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.