Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Forward (+)

26786213 .. 26791527

Gene Structure 5315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGGAAATATGTTGCAGGGCTATGGCTTTTTTTCTTATGCTCTACTCATTTTTCTATGCCTCCATTTGGAAGGCCAATATTATTCATATGCAAACGGATGTGATTTTTTTCAAGGGAGTTGGGTTTATGATGTTAGCTATCCACTCTATGACACATCGGGCTGCCCTTTCGTTGAGGAAGAGTTTGATTGCCAGAAAAATGGACGGCCAGACGATCAGTATCTCAAATATAGATGGAAGCCTGACGCATGTGCACTCCCAAGATTCAATGGGGAGGACATGCTGAGGAGGTTAAAGGGGAAAAAAATAATATTCGTAGGTGACTCTTTAAGCCTCAATCAATGGCAATCGCTAACATGTATGTTGTATGCTGCTGTGCCCCAAACACATTATACTATAACAAGGAAAGAAGCCATCTCCACGTTTTCGTTGCCTGATTATGATGTTTCGGTTACTCTATCTCGCAATGCATTTTTGGTGGACCTAGTGAATACAGTAGTAGGCAGGGTTCTAAAGCTGGACTCTATTGAGAACGGGGACGCATGGAGAGGATATGATATGCTTATCTTTAATACTTGGCACTGGTGGCTGCATAAAGGAAGCCAACAACCATGGGACTACATTGAAGCAGGAGGTGAGATACTCAAAGATATGGATCGTTTAGTTGCTTTTAGGGAGGGATTAACTACTTGGTCCAAGTGGGTGGACTATAATGTTGATTTTAGCAACACCAAAGTTTTCTTTCAAGGGATTTCTCCGACCCACTACAATGGAAAAGAGTGGAATGGGTCAGAGTCAGCAACTTGCAATGGACAAACTCAACCAGTAAGAGGCTCAAAATATCCGGGAGGTTCACCACCGGCAGCAACTGTGGTAAACCAAGTGTTGACTGCCATGACATCCGCAGTAATCTTGCTTGACATAACGTTGCTATCGCAGTTGAGAAAAGATGGACACCCATCTACATATGGCATCGATGGAAAGAAAGGAAATGATTGTAGTCACTGGTGCCTTGCTGGTGTGCCTGATACCTGGAACGAACTATTCTACGCAACTCTTGTGGCTACTGATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

359

Amino Acids

40.62

Weight (kDa)

5.37

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	33 - 84	2.7e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	86 - 351	2.2e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1008
AciI	CCGC	1 cut(s)	903
AclI	AACGTT	1 cut(s)	926
AclWI	GGATC	1 cut(s)	663
AcoI	YGGCCR	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	67, 830
AflIII	ACRYGT	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	113, 268, 626, 746
AjnI	CCWGG	1 cut(s)	1031
AluBI	AGCT	2 cut(s)	138, 517
AluI	AGCT	2 cut(s)	138, 517
Alw21I	GWGCWC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	663
AlwNI	CAGNNNCTG	1 cut(s)	869
AoxI	GGCC	2 cut(s)	73, 206
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	4 cut(s)	162, 371, 589, 863
AspS9I	GGNCC	2 cut(s)	481, 693
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	3 cut(s)	332, 647, 846
AvaII	GGWCC	2 cut(s)	481, 693
BaeGI	GKGCMC	2 cut(s)	256, 381
BanI	GGYRCC	1 cut(s)	1008
Bbv12I	GWGCWC	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	4 cut(s)	149, 358, 576, 875
BccI	CCATC	5 cut(s)	228, 422, 944, 967, 971
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	1033
BclI	TGATCA	1 cut(s)	1069
BcnI	CCSGG	1 cut(s)	846
BfaI	CTAG	1 cut(s)	485
BisI	GCNGC	4 cut(s)	163, 372, 590, 864
BlsI	GCNGC	4 cut(s)	164, 373, 591, 865
Bme1390I	CCNGG	2 cut(s)	846, 1033
Bme18I	GGWCC	2 cut(s)	481, 693
BmgT120I	GGNCC	2 cut(s)	481, 693
BmiI	GGNNCC	1 cut(s)	1010
BmrFI	CCNGG	2 cut(s)	846, 1033
BmsI	GCATC	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	846
Bsa29I	ATCGAT	1 cut(s)	975
BsaBI	GATNNNNATC	2 cut(s)	219, 654
BsaJI	CCNNGG	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 830
Bse118I	RCCGGY	1 cut(s)	859
Bse1I	ACTGG	3 cut(s)	587, 824, 1010
Bse3DI	GCAATG	2 cut(s)	472, 814
Bse8I	GATNNNNATC	2 cut(s)	219, 654
BseBI	CCWGG	1 cut(s)	1033
BseCI	ATCGAT	1 cut(s)	975
BseDI	CCNNGG	1 cut(s)	611
BseGI	GGATG	2 cut(s)	104, 899
BseJI	GATNNNNATC	2 cut(s)	219, 654
BseLI	CCNNNNNNNGG	2 cut(s)	67, 830
BseMI	GCAATG	2 cut(s)	472, 814
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	3 cut(s)	587, 824, 1010
BseRI	GAGGAG	1 cut(s)	301
BseSI	GKGCMC	2 cut(s)	256, 381
BseXI	GCAGC	4 cut(s)	149, 358, 576, 875
BshFI	GGCC	2 cut(s)	75, 208
BshNI	GGYRCC	1 cut(s)	1008
BshVI	ATCGAT	1 cut(s)	975
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	845, 860
BslFI	GGGAC	2 cut(s)	551, 629
BslI	CCNNNNNNNGG	2 cut(s)	67, 830
BsmFI	GGGAC	2 cut(s)	551, 629
BsnI	GGCC	2 cut(s)	75, 208
Bsp1286I	GDGCHC	2 cut(s)	256, 381
Bsp143I	GATC	3 cut(s)	214, 655, 1069
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	1 cut(s)	903
BspANI	GGCC	2 cut(s)	75, 208
BspCNI	CTCAG	1 cut(s)	276
BspDI	ATCGAT	1 cut(s)	975
BspLI	GGNNCC	1 cut(s)	1010
BspPI	GGATC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	1008
BsrDI	GCAATG	2 cut(s)	472, 814
BsrFI	RCCGGY	1 cut(s)	859
BsrI	ACTGG	3 cut(s)	587, 824, 1010
BssAI	RCCGGY	1 cut(s)	859
BssECI	CCNNGG	1 cut(s)	611
BssMI	GATC	3 cut(s)	214, 655, 1069
BssT1I	CCWWGG	1 cut(s)	611
Bst2UI	CCWGG	1 cut(s)	1033
Bst4CI	ACNGT	2 cut(s)	496, 871
Bst6I	CTCTTC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	1 cut(s)	611
BstF5I	GGATG	2 cut(s)	104, 899
BstKTI	GATC	3 cut(s)	217, 658, 1072
BstMBI	GATC	3 cut(s)	214, 655, 1069
BstMWI	GCNNNNNNNGC	1 cut(s)	586
BstNI	CCWGG	1 cut(s)	1033
BstNSI	RCATGY	3 cut(s)	252, 283, 360
BstSCI	CCNGG	2 cut(s)	844, 1031
BstSLI	GKGCMC	2 cut(s)	256, 381
BstV1I	GCAGC	4 cut(s)	149, 358, 576, 875
BstXI	CCANNNNNNTGG	3 cut(s)	200, 703, 770
Bsu15I	ATCGAT	1 cut(s)	975
BsuRI	GGCC	2 cut(s)	75, 208
BsuTUI	ATCGAT	1 cut(s)	975
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	2 cut(s)	104, 899
BtsIMutI	CAGTG	2 cut(s)	580, 1003
CaiI	CAGNNNCTG	1 cut(s)	869
Cfr10I	RCCGGY	1 cut(s)	859
Cfr13I	GGNCC	2 cut(s)	481, 693
ClaI	ATCGAT	1 cut(s)	975
CseI	GACGC	2 cut(s)	254, 548
CspCI	CAANNNNNGTGG	2 cut(s)	1041, 1076
CviAII	CATG	6 cut(s)	249, 280, 357, 543, 612, 895
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	3 cut(s)	216, 657, 1071
DpnII	GATC	3 cut(s)	214, 655, 1069
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	481, 693
EcoRII	CCWGG	1 cut(s)	1031
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	6 cut(s)	252, 283, 360, 546, 615, 898
FaqI	GGGAC	2 cut(s)	551, 629
FatI	CATG	6 cut(s)	248, 279, 356, 542, 611, 894
FauNDI	CATATG	2 cut(s)	88, 967
FbaI	TGATCA	1 cut(s)	1069
Fnu4HI	GCNGC	4 cut(s)	163, 372, 590, 864
FokI	GGATG	2 cut(s)	111, 886
Fsp4HI	GCNGC	4 cut(s)	163, 372, 590, 864
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	4 cut(s)	163, 372, 590, 864
HaeIII	GGCC	2 cut(s)	75, 208
HapII	CCGG	2 cut(s)	845, 860
HgaI	GACGC	2 cut(s)	254, 548
Hin1II	CATG	6 cut(s)	252, 283, 360, 546, 615, 898
HincII	GTYRAC	1 cut(s)	888
HindII	GTYRAC	1 cut(s)	888
HinfI	GANTC	4 cut(s)	264, 323, 521, 794
HpaII	CCGG	2 cut(s)	845, 860
HphI	GGTGA	3 cut(s)	332, 647, 846
Hpy166II	GTNNAC	6 cut(s)	254, 481, 706, 854, 877, 888
Hpy188I	TCNGA	2 cut(s)	759, 793
Hpy8I	GTNNAC	6 cut(s)	254, 481, 706, 854, 877, 888
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	2 cut(s)	496, 871
HpyCH4IV	ACGT	2 cut(s)	422, 926
HpyCH4V	TGCA	6 cut(s)	16, 92, 254, 470, 592, 807
HpyF10VI	GCNNNNNNNGC	1 cut(s)	586
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	2 cut(s)	422, 926
Hsp92II	CATG	6 cut(s)	252, 283, 360, 546, 615, 898
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	3 cut(s)	214, 655, 1069
Lsp1109I	GCAGC	4 cut(s)	149, 358, 576, 875
LweI	GCATC	1 cut(s)	981
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	2 cut(s)	422, 926
MaeIII	GTNAC	3 cut(s)	320, 451, 1001
MalI	GATC	3 cut(s)	216, 657, 1071
MboI	GATC	3 cut(s)	214, 655, 1069
MboII	GAAGA	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	256, 381
MlyI	GAGTC	3 cut(s)	317, 515, 803
MmeI	TCCRAC	1 cut(s)	782
Mph1103I	ATGCAT	1 cut(s)	472
MseI	TTAA	4 cut(s)	293, 329, 570, 683
MslI	CAYNNNNRTG	1 cut(s)	768
MspI	CCGG	2 cut(s)	845, 860
MspR9I	CCNGG	2 cut(s)	846, 1033
MvaI	CCWGG	1 cut(s)	1033
MwoI	GCNNNNNNNGC	1 cut(s)	586
NciI	CCSGG	1 cut(s)	846
NcoI	CCATGG	1 cut(s)	611
NdeI	CATATG	2 cut(s)	88, 967
NdeII	GATC	3 cut(s)	214, 655, 1069
NlaIII	CATG	6 cut(s)	252, 283, 360, 546, 615, 898
NlaIV	GGNNCC	1 cut(s)	1010
NmuCI	GTSAC	2 cut(s)	320, 1001
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	3 cut(s)	252, 283, 360
PciI	ACATGT	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	844
PkrI	GCNGC	4 cut(s)	164, 373, 591, 865
PleI	GAGTC	3 cut(s)	317, 515, 802
PpsI	GAGTC	3 cut(s)	317, 515, 802
PscI	ACATGT	1 cut(s)	356
Psp1406I	AACGTT	1 cut(s)	926
Psp6I	CCWGG	1 cut(s)	1031
PspGI	CCWGG	1 cut(s)	1031
PspN4I	GGNNCC	1 cut(s)	1010
PspPI	GGNCC	2 cut(s)	481, 693
PsrI	GAACNNNNNNTAC	2 cut(s)	492, 524
PstNI	CAGNNNCTG	1 cut(s)	869
RseI	CAYNNNNRTG	1 cut(s)	768
SaqAI	TTAA	4 cut(s)	293, 329, 570, 683
SatI	GCNGC	4 cut(s)	163, 372, 590, 864
Sau3AI	GATC	3 cut(s)	214, 655, 1069
Sau96I	GGNCC	2 cut(s)	481, 693
SchI	GAGTC	3 cut(s)	317, 515, 803
ScrFI	CCNGG	2 cut(s)	846, 1033
SduI	GDGCHC	2 cut(s)	256, 381
SfaNI	GCATC	1 cut(s)	981
SinI	GGWCC	2 cut(s)	481, 693
SmiMI	CAYNNNNRTG	1 cut(s)	768
SsiI	CCGC	1 cut(s)	903
SspI	AATATT	2 cut(s)	80, 312
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	2 cut(s)	844, 1031
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	496, 871
TaiI	ACGT	2 cut(s)	425, 929
TaqI	TCGA	1 cut(s)	975
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	4 cut(s)	293, 329, 570, 683
Tru9I	TTAA	4 cut(s)	293, 329, 570, 683
TscAI	CASTG	2 cut(s)	587, 1010
TseFI	GTSAC	2 cut(s)	320, 1001
TseI	GCWGC	4 cut(s)	162, 371, 589, 863
Tsp45I	GTSAC	2 cut(s)	320, 1001
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	2 cut(s)	587, 1010
VneI	GTGCAC	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	481, 693
XceI	RCATGY	3 cut(s)	252, 283, 360
XspI	CTAG	1 cut(s)	485
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.