pycom12g16360

Belongs to the TPP enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
18723206 .. 18724788
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16360.2

Sequence Viewer

Length: 1065 bp
ATGGACACAAAGATCGGATCCCTCGACGTCTGCAAGCCGGCGTGCACCGATGTCGGGAGCCTCCCCATCGGCGCCGCTTCGGCAATACAGAGCTCTGCCCCCTCTACCGTGATCAACTCCTGCGACGCCACTCTTGGTCGCCACCTCGCGCGCCGACTCGTCCAAATCGGCGTCACTGACGTTTTTACTGTACCTGGTGACTTTAACTTGACCCTCCTCGACCACCTCATCGCCGAGCCCGGGCTCACCAACATCGGCTGCTGCAATGAACTCAACGCCGGGTACGCTGCTGACGGCTACGCTCGATCGCGGGGAGTCGGCGCATGTGTTGTTACTTTCACTGTGGGTGGGCTCAGTGTTCTCAATGCGATTGCCGGAGCTTACAGTGAGAATCTTCCATTGATTTGTATAGTTGGAGGGCCGAACTCGAACGATTACGGGACGAACAGGATTCTTCACCACACTATTGGATTGCCGGATTTTAGCCAAGAGCTGAGATGCTTTCAGACTGTGACTTGCTATCAGGCTGTGGTGAATAATCTGGAAGATGCGCATGAAATGATCGATACCGCAATTTCAACTGCTTTGAAAGAAAGCAAGCCTGTTTATATCAGCATAAGCTGCAACTTGGCTGGAGTTCCTCATCCTACATTTAGCCGGGAGCCTGTTCCATTTTCTTTATCTCCAAAATTGAGCAATCATTTGGGCTTAGAGGCTGCGGTGGAGGCGGCTGCAGAGTTCTTGAACAAGGCAGTGAAGCCGGTTATGGTTGGTGGGCCTAAACTTCGAGTTGCACATGCTGGCGATGCCTTTGTTGAACTTGCTGATGCTAGTGGTTATGCTCTGGCTGTCATGCCATCTGCAAAGGGGCTTGTACCAGAGCACCACCCCCATTTTATTGGAACATACTGGGGTGCTGTGAGCACTGCTTTTTGCGCCGAGATAGTGGAGTCCGCAGATGCATACTTGTTTGCTGGACCGATTTTCAATGACTACAGCTCTGTTGGGTACTCTTTGCTTATCAAGAAGGAGAAGGCCATTGTGGTGCAGCCTGATCGATCGTGA

Protein Analysis

355

Amino Acids

37.18

Weight (kDa)

5.4

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
Acc16I TGCGCA 1 cut(s) 552
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 3 cut(s) 149, 151, 310
AciI CCGC 6 cut(s) 75, 310, 570, 719, 728, 954
AclWI GGATC 2 cut(s) 12, 25
AcyI GRCGYC 4 cut(s) 27, 72, 126, 171
AfaI GTAC 4 cut(s) 192, 284, 876, 1010
AfiI CCNNNNNNNGG 2 cut(s) 54, 240
AgsI TTSAA 5 cut(s) 579, 589, 745, 818, 988
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 5 cut(s) 93, 380, 493, 621, 999
AluI AGCT 5 cut(s) 93, 380, 493, 621, 999
Alw21I GWGCWC 4 cut(s) 47, 95, 885, 926
Alw44I GTGCAC 1 cut(s) 43
AlwI GGATC 2 cut(s) 12, 25
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 3 cut(s) 419, 776, 1035
ApaLI GTGCAC 1 cut(s) 43
ApeKI GCWGC 7 cut(s) 258, 261, 287, 621, 716, 731, 1048
AspLEI GCGC 6 cut(s) 74, 151, 153, 323, 553, 938
AspS9I GGNCC 3 cut(s) 419, 776, 977
AsuC2I CCSGG 4 cut(s) 240, 241, 280, 659
AsuHPI GGTGA 4 cut(s) 209, 238, 449, 544
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 977
BaeGI GKGCMC 1 cut(s) 47
BamHI GGATCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 4 cut(s) 95, 240, 246, 354
Bbv12I GWGCWC 4 cut(s) 47, 95, 885, 926
BbvI GCAGC 7 cut(s) 245, 248, 274, 608, 703, 718, 1060
BccI CCATC 2 cut(s) 74, 865
BceAI ACGGC 1 cut(s) 310
BcgI CGANNNNNNTGC 3 cut(s) 34, 68, 1037
BciT130I CCWGG 1 cut(s) 195
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 4 cut(s) 240, 241, 280, 659
BfaI CTAG 1 cut(s) 831
BfmI CTRYAG 2 cut(s) 732, 994
BfoI RGCGCY 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 9 cut(s) 75, 259, 262, 288, 622, 717, 729, 732, 1049
BlsI GCNGC 9 cut(s) 76, 260, 263, 289, 623, 718, 730, 733, 1050
Bme1390I CCNGG 5 cut(s) 195, 240, 241, 280, 659
Bme18I GGWCC 1 cut(s) 977
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 3 cut(s) 419, 776, 977
BmiI GGNNCC 4 cut(s) 19, 59, 73, 663
BmrFI CCNGG 5 cut(s) 195, 240, 241, 280, 659
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 5 cut(s) 488, 538, 796, 817, 949
BmuI ACTGGG 1 cut(s) 919
BpmI CTGGAG 1 cut(s) 654
BpuMI CCSGG 4 cut(s) 240, 241, 280, 659
Bsa29I ATCGAT 2 cut(s) 564, 1057
BsaHI GRCGYC 4 cut(s) 27, 72, 126, 171
BsaJI CCNNGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 240
Bse118I RCCGGY 2 cut(s) 37, 760
Bse1I ACTGG 1 cut(s) 914
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 195
BseCI ATCGAT 2 cut(s) 564, 1057
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 643
BseLI CCNNNNNNNGG 2 cut(s) 54, 240
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 367, 485
BseNI ACTGG 1 cut(s) 914
BsePI GCGCGC 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 47
BseXI GCAGC 7 cut(s) 245, 248, 274, 608, 703, 718, 1060
Bsh1236I CGCG 3 cut(s) 149, 151, 310
Bsh1285I CGRYCG 2 cut(s) 308, 1061
BshFI GGCC 3 cut(s) 421, 778, 1037
BshNI GGYRCC 1 cut(s) 71
BshVI ATCGAT 2 cut(s) 564, 1057
BsiEI CGRYCG 2 cut(s) 308, 1061
BsiHKAI GWGCWC 4 cut(s) 47, 95, 885, 926
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 7 cut(s) 38, 240, 279, 375, 476, 658, 761
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 54, 240
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 3 cut(s) 421, 778, 1037
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 7 cut(s) 47, 95, 240, 246, 354, 885, 926
Bsp143I GATC 7 cut(s) 12, 17, 111, 305, 561, 1054, 1058
BspACI CCGC 6 cut(s) 75, 310, 570, 719, 728, 954
BspANI GGCC 3 cut(s) 421, 778, 1037
BspCNI CTCAG 2 cut(s) 366, 486
BspDI ATCGAT 2 cut(s) 564, 1057
BspFNI CGCG 3 cut(s) 149, 151, 310
BspLI GGNNCC 4 cut(s) 19, 59, 73, 663
BspMAI CTGCAG 1 cut(s) 736
BspPI GGATC 2 cut(s) 12, 25
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 37, 760
BsrI ACTGG 1 cut(s) 914
BssAI RCCGGY 2 cut(s) 37, 760
BssECI CCNNGG 1 cut(s) 239
BssHII GCGCGC 1 cut(s) 149
BssMI GATC 7 cut(s) 12, 17, 111, 305, 561, 1054, 1058
BssNI GRCGYC 4 cut(s) 27, 72, 126, 171
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 5 cut(s) 109, 190, 343, 386, 511
BstACI GRCGYC 4 cut(s) 27, 72, 126, 171
BstAPI GCANNNNNTGC 1 cut(s) 621
BstC8I GCNNGC 6 cut(s) 35, 39, 43, 151, 599, 802
BstDEI CTNAG 3 cut(s) 353, 494, 709
BstF5I GGATG 1 cut(s) 643
BstFNI CGCG 3 cut(s) 149, 151, 310
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 6 cut(s) 74, 151, 153, 323, 553, 938
BstKTI GATC 7 cut(s) 15, 20, 114, 308, 564, 1057, 1061
BstMBI GATC 7 cut(s) 12, 17, 111, 305, 561, 1054, 1058
BstMCI CGRYCG 2 cut(s) 308, 1061
BstMWI GCNNNNNNNGC 6 cut(s) 80, 284, 621, 725, 806, 935
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 2 cut(s) 327, 800
BstSCI CCNGG 5 cut(s) 193, 238, 239, 278, 657
BstSFI CTRYAG 2 cut(s) 732, 994
BstSLI GKGCMC 1 cut(s) 47
BstUI CGCG 3 cut(s) 149, 151, 310
BstV1I GCAGC 7 cut(s) 245, 248, 274, 608, 703, 718, 1060
BstX2I RGATCY 1 cut(s) 17
BstXI CCANNNNNNTGG 2 cut(s) 467, 899
BstYI RGATCY 1 cut(s) 17
Bsu15I ATCGAT 2 cut(s) 564, 1057
BsuRI GGCC 3 cut(s) 421, 778, 1037
BsuTUI ATCGAT 2 cut(s) 564, 1057
BtgZI GCGATG 2 cut(s) 214, 819
BtsCI GGATG 1 cut(s) 643
BtsI GCAGTG 2 cut(s) 759, 924
BtsIMutI CAGTG 6 cut(s) 174, 339, 361, 391, 759, 924
Cac8I GCNNGC 6 cut(s) 35, 39, 43, 151, 599, 802
CfoI GCGC 6 cut(s) 74, 151, 153, 323, 553, 938
Cfr10I RCCGGY 2 cut(s) 37, 760
Cfr13I GGNCC 3 cut(s) 419, 776, 977
Cfr9I CCCGGG 1 cut(s) 239
ClaI ATCGAT 2 cut(s) 564, 1057
CseI GACGC 2 cut(s) 134, 160
CsiI ACCWGGT 1 cut(s) 193
Csp6I GTAC 4 cut(s) 191, 283, 875, 1009
CviAII CATG 4 cut(s) 324, 554, 797, 853
CviQI GTAC 4 cut(s) 191, 283, 875, 1009
DdeI CTNAG 3 cut(s) 353, 494, 709
DinI GGCGCC 1 cut(s) 73
DpnI GATC 7 cut(s) 14, 19, 113, 307, 563, 1056, 1060
DpnII GATC 7 cut(s) 12, 17, 111, 305, 561, 1054, 1058
Ecl136II GAGCTC 1 cut(s) 93
Eco24I GRGCYC 4 cut(s) 95, 240, 246, 354
Eco47I GGWCC 1 cut(s) 977
Eco53kI GAGCTC 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 964
EcoT38I GRGCYC 4 cut(s) 95, 240, 246, 354
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
FaeI CATG 4 cut(s) 327, 557, 800, 856
FaqI GGGAC 1 cut(s) 454
FatI CATG 4 cut(s) 323, 553, 796, 852
FauI CCCGC 1 cut(s) 303
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 9 cut(s) 75, 259, 262, 288, 622, 717, 729, 732, 1049
FokI GGATG 1 cut(s) 630
FriOI GRGCYC 4 cut(s) 95, 240, 246, 354
Fsp4HI GCNGC 9 cut(s) 75, 259, 262, 288, 622, 717, 729, 732, 1049
FspAI RTGCGCAY 1 cut(s) 552
FspBI CTAG 1 cut(s) 831
FspI TGCGCA 1 cut(s) 552
GlaI GCGC 6 cut(s) 73, 150, 152, 322, 552, 937
GluI GCNGC 9 cut(s) 75, 259, 262, 288, 622, 717, 729, 732, 1049
GsuI CTGGAG 1 cut(s) 654
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 3 cut(s) 421, 778, 1037
HapII CCGG 7 cut(s) 38, 240, 279, 375, 476, 658, 761
HgaI GACGC 2 cut(s) 134, 160
HhaI GCGC 6 cut(s) 74, 151, 153, 323, 553, 938
Hin1I GRCGYC 4 cut(s) 27, 72, 126, 171
Hin1II CATG 4 cut(s) 327, 557, 800, 856
Hin6I GCGC 6 cut(s) 72, 149, 151, 321, 551, 936
HinP1I GCGC 6 cut(s) 72, 149, 151, 321, 551, 936
HinfI GANTC 5 cut(s) 156, 315, 391, 451, 950
HpaII CCGG 7 cut(s) 38, 240, 279, 375, 476, 658, 761
HphI GGTGA 4 cut(s) 209, 238, 449, 544
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 17, 507
Hpy188III TCNNGA 5 cut(s) 55, 542, 742, 1024, 1062
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 29, 128
HpyAV CCTTC 2 cut(s) 1021, 1027
HpyCH4III ACNGT 5 cut(s) 109, 190, 343, 386, 511
HpyCH4IV ACGT 2 cut(s) 27, 180
HpyCH4V TGCA 9 cut(s) 33, 45, 264, 624, 734, 794, 863, 962, 1048
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 284, 621, 725, 806, 935
HpyF3I CTNAG 3 cut(s) 353, 494, 709
HpySE526I ACGT 2 cut(s) 27, 180
Hsp92I GRCGYC 4 cut(s) 27, 72, 126, 171
Hsp92II CATG 4 cut(s) 327, 557, 800, 856
HspAI GCGC 6 cut(s) 72, 149, 151, 321, 551, 936
KasI GGCGCC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 7 cut(s) 12, 17, 111, 305, 561, 1054, 1058
LmnI GCTCC 3 cut(s) 57, 377, 661
Lsp1109I GCAGC 7 cut(s) 245, 248, 274, 608, 703, 718, 1060
LweI GCATC 5 cut(s) 488, 538, 796, 817, 949
MabI ACCWGGT 1 cut(s) 193
MaeI CTAG 1 cut(s) 831
MaeII ACGT 2 cut(s) 27, 180
MaeIII GTNAC 4 cut(s) 172, 197, 331, 511
MalI GATC 7 cut(s) 14, 19, 113, 307, 563, 1056, 1060
MboI GATC 7 cut(s) 12, 17, 111, 305, 561, 1054, 1058
MboII GAAGA 3 cut(s) 386, 446, 557
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 7 cut(s) 47, 95, 240, 246, 354, 885, 926
MluCI AATT 2 cut(s) 573, 689
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 3 cut(s) 150, 324, 959
MmeI TCCRAC 1 cut(s) 394
Mph1103I ATGCAT 1 cut(s) 964
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 1043
MspI CCGG 7 cut(s) 38, 240, 279, 375, 476, 658, 761
MspR9I CCNGG 5 cut(s) 195, 240, 241, 280, 659
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 3 cut(s) 149, 151, 310
MwoI GCNNNNNNNGC 6 cut(s) 80, 284, 621, 725, 806, 935
NaeI GCCGGC 1 cut(s) 39
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 4 cut(s) 240, 241, 280, 659
NdeII GATC 7 cut(s) 12, 17, 111, 305, 561, 1054, 1058
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 4 cut(s) 327, 557, 800, 856
NlaIV GGNNCC 4 cut(s) 19, 59, 73, 663
NmeAIII GCCGAG 2 cut(s) 259, 964
NmuCI GTSAC 3 cut(s) 172, 197, 511
NsbI TGCGCA 1 cut(s) 552
NsiI ATGCAT 1 cut(s) 964
NspI RCATGY 2 cut(s) 327, 800
PauI GCGCGC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdiI GCCGGC 1 cut(s) 39
PfeI GAWTC 2 cut(s) 391, 451
PkrI GCNGC 9 cut(s) 76, 260, 263, 289, 623, 718, 730, 733, 1050
Ple19I CGATCG 2 cut(s) 308, 1061
PleI GAGTC 3 cut(s) 150, 323, 958
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 3 cut(s) 150, 323, 958
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 4 cut(s) 19, 59, 73, 663
PspPI GGNCC 3 cut(s) 419, 776, 977
PstI CTGCAG 1 cut(s) 736
PsuI RGATCY 1 cut(s) 17
PteI GCGCGC 1 cut(s) 149
PvuI CGATCG 2 cut(s) 308, 1061
RsaI GTAC 4 cut(s) 192, 284, 876, 1010
RsaNI GTAC 4 cut(s) 191, 283, 875, 1009
RseI CAYNNNNRTG 1 cut(s) 1043
SacI GAGCTC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 9 cut(s) 75, 259, 262, 288, 622, 717, 729, 732, 1049
Sau3AI GATC 7 cut(s) 12, 17, 111, 305, 561, 1054, 1058
Sau96I GGNCC 3 cut(s) 419, 776, 977
SchI GAGTC 3 cut(s) 150, 324, 959
ScrFI CCNGG 5 cut(s) 195, 240, 241, 280, 659
SduI GDGCHC 7 cut(s) 47, 95, 240, 246, 354, 885, 926
SexAI ACCWGGT 1 cut(s) 193
SfaNI GCATC 5 cut(s) 488, 538, 796, 817, 949
SfcI CTRYAG 2 cut(s) 732, 994
SfoI GGCGCC 1 cut(s) 73
SinI GGWCC 1 cut(s) 977
SmaI CCCGGG 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 1043
SrfI GCCCGGGC 1 cut(s) 241
Sse9I AATT 2 cut(s) 573, 689
SsiI CCGC 6 cut(s) 75, 310, 570, 719, 728, 954
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 1 cut(s) 831
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 5 cut(s) 193, 238, 239, 278, 657
TaaI ACNGT 5 cut(s) 109, 190, 343, 386, 511
TaiI ACGT 2 cut(s) 30, 183
TaqI TCGA 7 cut(s) 24, 219, 304, 428, 564, 787, 1057
TaqII GACCGA 1 cut(s) 994
TasI AATT 2 cut(s) 573, 689
TauI GCSGC 2 cut(s) 77, 731
TfiI GAWTC 2 cut(s) 391, 451
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 6 cut(s) 181, 346, 361, 391, 759, 931
TseFI GTSAC 3 cut(s) 172, 197, 511
TseI GCWGC 7 cut(s) 258, 261, 287, 621, 716, 731, 1048
Tsp45I GTSAC 3 cut(s) 172, 197, 511
TspDTI ATGAA 2 cut(s) 282, 570
TspMI CCCGGG 1 cut(s) 239
TspRI CASTG 6 cut(s) 181, 346, 361, 391, 759, 931
VneI GTGCAC 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 977
XceI RCATGY 2 cut(s) 327, 800
XmaI CCCGGG 1 cut(s) 239
XspI CTAG 1 cut(s) 831
ZraI GACGTC 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.