Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003299

Physical Location & Seq

Genomic Coordinates Reverse (-)

4327635 .. 4330269

Gene Structure 2635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0057400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGATCTAGAATCTATATCAGAGGCCACTTCAGGAGCCATAGGGTCACTGTTGAGCACCACCATTCTGTACCCACTTGACACCTGCAAAACCAGGTACCAAGCTGACGTCAGAGCCAATGATCAGGCCAAGTACAGGAACCTCTCAGATGTATTCTGGGAAGCAATATCGACTCGGCAGGTTCTTTCACTGTATCAGGGTCTGGAAACAAAAAATCTGCAATCCTTCATTTCTCAGTTTGTTTACTTTTATGGGTATAGCTACTTCAAAAGACTATATCTGGAAACCAGCAGTTCTAAATCTATAGGTACAACAGCAAACTTGATCCTTGCTGCTGCTGCTGGGGCTTGCACTGCCATTGCCACCCAGCCTCTGGATACAGCCTCATCAAGGATGCAGACAAGTGCCTTTGGAAAATCCAAAGGGCTGTGGAAGACCCTTACAGAGGGCACCTGGAGTGATGCATTTGATGGTCTTGGAATCTCCCTATTGCTTACTGCGAACCCTGCAATTCAGTATACAGTGTTTGATCAGCTAAAACAAAGACTCCTGAAAGGAAAACAAGATAAATCGGTCAAGGGTTCATCCCCAGAAGCCCTTTCTGCCTTTTCAGCATTTGTTCTAGGTGCAGTCTCAAAAAGTGTTGCTACTGTTTTAACCTATCCTGCCATCAGGTGTAAGGTCATGATCCAAGCTGCTGACCCAGATGATGACGATAAAACCAAGGAAGCCCGCCCAAGGATCCGAAAAACGATTCCAGGAACTCTCAGTGCTATATGGAAAAAGGAAGGCATTCCAGGCTTCTTCAAAGGATTGCATGCCCAGATCTTGAAAACTGTTCTGAGCTCCGCATTGCTTTTGATGATCAAGGAAAAAATTTCTGCTACTACTTGGGTTCTCATACTTGCAATCAGAAGGTATCTATTCCTCACAAGAGGCAGAGTAAAAAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009628 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0034059 GO:0036293 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

318

Amino Acids

34.89

Weight (kDa)

9.65

Isoelectric Point (pI)

22.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 95	6.1e-15	Mitochondrial carrier protein
Mito_carr	PF00153	103 - 185	6.3e-08	Mitochondrial carrier protein
Mito_carr	PF00153	200 - 294	2.1e-13	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33070 AT5G01320 AT5G01330
fragaria_vesca	FvH4_6g11100
malus_domestica	MD04G1159900.v1.1 MD04G1160100.v1.1 MD12G1172400.v1.1 MD12G1172500.v1.1 MD12G1173200.v1.1
prunus_persica	Prupe.6G280800_v2.0.a1 Prupe.6G280800_v2.0.a1
pyrus_communis	pycom04g14330 pycom04g14350 pycom12g16360 pycom12g16370 pycom17g25190
rosa_chinensis	RchiOBHm_Chr3g0462531 RchiOBHm_Chr7g0223061
rosa_laevigata	RLG00000024851 RLG00000024852
rosa_multiflora	Rmu_sc0003624.1_g000016 Rmu_sc0011346.1_g000001 Rmu_sc0025654.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335980 Rroxscaffold_6G00417420 Rroxscaffold_6G00417440 Rroxscaffold_6G00417450
rosa_rugosa	Rorug03G0057300 Rorug03G0057400 Rorug03G0141600
rosa_samantha	Rh3AG115300 Rh3BG118700 Rh3CG122100 Rh3DG120800 Rh4AG098400
rosa_wichuraiana	Rw3G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
AatII	GACGTC	1 cut(s)	111
Acc36I	ACCTGC	2 cut(s)	92, 169
Acc65I	GGTACC	1 cut(s)	96
AccB1I	GGYRCC	2 cut(s)	96, 449
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	2 cut(s)	733, 849
AclWI	GGATC	5 cut(s)	12, 319, 682, 736, 749
AcsI	RAATTY	1 cut(s)	876
AcuI	CTGAAG	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	4 cut(s)	71, 98, 134, 310
AfiI	CCNNNNNNNGG	5 cut(s)	135, 373, 390, 445, 738
AgsI	TTSAA	3 cut(s)	268, 808, 832
AjnI	CCWGG	4 cut(s)	92, 452, 757, 796
AluBI	AGCT	5 cut(s)	104, 261, 535, 695, 846
AluI	AGCT	5 cut(s)	104, 261, 535, 695, 846
Alw21I	GWGCWC	2 cut(s)	59, 848
Alw26I	GTCTC	1 cut(s)	637
AlwI	GGATC	5 cut(s)	12, 319, 682, 736, 749
AlwNI	CAGNNNCTG	2 cut(s)	202, 373
AoxI	GGCC	2 cut(s)	24, 126
ApeKI	GCWGC	4 cut(s)	332, 335, 338, 695
ApoI	RAATTY	1 cut(s)	876
Asp700I	GAANNNNTTC	1 cut(s)	792
Asp718I	GGTACC	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	452
BamHI	GGATCC	1 cut(s)	741
BanI	GGYRCC	2 cut(s)	96, 449
BanII	GRGCYC	1 cut(s)	848
BarI	GAAGNNNNNNTAC	2 cut(s)	248, 280
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	2 cut(s)	59, 848
BbvI	GCAGC	4 cut(s)	319, 322, 325, 682
BccI	CCATC	2 cut(s)	464, 677
BciT130I	CCWGG	4 cut(s)	94, 454, 759, 798
BciVI	GTATCC	1 cut(s)	370
BclI	TGATCA	3 cut(s)	121, 529, 864
BcoDI	GTCTC	1 cut(s)	637
BfaI	CTAG	2 cut(s)	8, 623
BfmI	CTRYAG	1 cut(s)	303
BfuAI	ACCTGC	2 cut(s)	92, 169
BfuI	GTATCC	1 cut(s)	370
BglII	AGATCT	1 cut(s)	825
BisI	GCNGC	4 cut(s)	333, 336, 339, 696
BlsI	GCNGC	4 cut(s)	334, 337, 340, 697
Bme1390I	CCNGG	4 cut(s)	94, 454, 759, 798
BmiI	GGNNCC	5 cut(s)	37, 98, 140, 451, 743
BmrFI	CCNGG	4 cut(s)	94, 454, 759, 798
BmsI	GCATC	2 cut(s)	384, 451
BpiI	GAAGAC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	723, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	5 cut(s)	135, 373, 390, 445, 738
Bse3DI	GCAATG	2 cut(s)	357, 851
BseBI	CCWGG	4 cut(s)	94, 454, 759, 798
BseDI	CCNNGG	2 cut(s)	723, 737
BseGI	GGATG	2 cut(s)	399, 584
BseLI	CCNNNNNNNGG	5 cut(s)	135, 373, 390, 445, 738
BseMI	GCAATG	2 cut(s)	357, 851
BseMII	CTCAG	4 cut(s)	159, 248, 781, 833
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	4 cut(s)	319, 322, 325, 682
BseYI	CCCAGC	2 cut(s)	341, 366
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	26, 128
BshNI	GGYRCC	2 cut(s)	96, 449
BsiHKAI	GWGCWC	2 cut(s)	59, 848
BslI	CCNNNNNNNGG	5 cut(s)	135, 373, 390, 445, 738
BsmAI	GTCTC	1 cut(s)	637
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	2 cut(s)	26, 128
Bsp1286I	GDGCHC	3 cut(s)	59, 452, 848
Bsp143I	GATC	8 cut(s)	4, 121, 324, 529, 687, 741, 825, 864
BspACI	CCGC	2 cut(s)	733, 849
BspANI	GGCC	2 cut(s)	26, 128
BspCNI	CTCAG	4 cut(s)	158, 247, 780, 834
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	5 cut(s)	37, 98, 140, 451, 743
BspMI	ACCTGC	2 cut(s)	92, 169
BspPI	GGATC	5 cut(s)	12, 319, 682, 736, 749
BspT107I	GGYRCC	2 cut(s)	96, 449
BsrDI	GCAATG	2 cut(s)	357, 851
BssECI	CCNNGG	2 cut(s)	723, 737
BssMI	GATC	8 cut(s)	4, 121, 324, 529, 687, 741, 825, 864
BssNAI	GTATAC	1 cut(s)	519
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	723, 737
Bst1107I	GTATAC	1 cut(s)	519
Bst2UI	CCWGG	4 cut(s)	94, 454, 759, 798
Bst4CI	ACNGT	5 cut(s)	51, 192, 523, 652, 838
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	349, 733, 819
BstDEI	CTNAG	4 cut(s)	145, 234, 767, 842
BstENI	CCTNNNNNAGG	2 cut(s)	388, 443
BstF5I	GGATG	2 cut(s)	399, 584
BstKTI	GATC	8 cut(s)	7, 124, 327, 532, 690, 744, 828, 867
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	8 cut(s)	4, 121, 324, 529, 687, 741, 825, 864
BstMWI	GCNNNNNNNGC	7 cut(s)	338, 344, 353, 506, 602, 611, 798
BstNI	CCWGG	4 cut(s)	94, 454, 759, 798
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	4 cut(s)	92, 452, 757, 796
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	452
BstV1I	GCAGC	4 cut(s)	319, 322, 325, 682
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	3 cut(s)	4, 741, 825
BstYI	RGATCY	3 cut(s)	4, 741, 825
BstZ17I	GTATAC	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	26, 128
BtsCI	GGATG	2 cut(s)	399, 584
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	5 cut(s)	47, 188, 351, 528, 775
BveI	ACCTGC	2 cut(s)	92, 169
Cac8I	GCNNGC	3 cut(s)	349, 733, 819
CaiI	CAGNNNCTG	2 cut(s)	202, 373
CciI	TCATGA	1 cut(s)	684
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	4 cut(s)	70, 97, 133, 309
CviAII	CATG	3 cut(s)	685, 818, 954
CviQI	GTAC	4 cut(s)	70, 97, 133, 309
DdeI	CTNAG	4 cut(s)	145, 234, 767, 842
DpnI	GATC	8 cut(s)	6, 123, 326, 531, 689, 743, 827, 866
DpnII	GATC	8 cut(s)	4, 121, 324, 529, 687, 741, 825, 864
Ecl136II	GAGCTC	1 cut(s)	846
Eco130I	CCWWGG	2 cut(s)	723, 737
Eco24I	GRGCYC	1 cut(s)	848
Eco53kI	GAGCTC	1 cut(s)	846
Eco57I	CTGAAG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	846
EcoNI	CCTNNNNNAGG	2 cut(s)	388, 443
EcoRII	CCWGG	4 cut(s)	92, 452, 757, 796
EcoT14I	CCWWGG	2 cut(s)	723, 737
EcoT22I	ATGCAT	2 cut(s)	466, 955
EcoT38I	GRGCYC	1 cut(s)	848
ErhI	CCWWGG	2 cut(s)	723, 737
FaeI	CATG	3 cut(s)	688, 821, 957
FatI	CATG	3 cut(s)	684, 817, 953
FauI	CCCGC	1 cut(s)	740
FbaI	TGATCA	3 cut(s)	121, 529, 864
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	4 cut(s)	333, 336, 339, 696
FokI	GGATG	2 cut(s)	406, 571
FriOI	GRGCYC	1 cut(s)	848
Fsp4HI	GCNGC	4 cut(s)	333, 336, 339, 696
FspBI	CTAG	2 cut(s)	8, 623
GluI	GCNGC	4 cut(s)	333, 336, 339, 696
GsaI	CCCAGC	2 cut(s)	345, 370
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	2 cut(s)	26, 128
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	688, 821, 957
HinfI	GANTC	5 cut(s)	11, 172, 480, 546, 754
Hpy166II	GTNNAC	2 cut(s)	244, 519
Hpy188I	TCNGA	6 cut(s)	22, 113, 148, 746, 843, 914
Hpy188III	TCNNGA	8 cut(s)	8, 33, 203, 281, 374, 550, 685, 829
Hpy8I	GTNNAC	2 cut(s)	244, 519
HpyAV	CCTTC	3 cut(s)	235, 782, 909
HpyCH4III	ACNGT	5 cut(s)	51, 192, 523, 652, 838
HpyCH4IV	ACGT	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	7 cut(s)	338, 344, 353, 506, 602, 611, 798
HpyF3I	CTNAG	4 cut(s)	145, 234, 767, 842
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	688, 821, 957
KpnI	GGTACC	1 cut(s)	100
Ksp22I	TGATCA	3 cut(s)	121, 529, 864
Kzo9I	GATC	8 cut(s)	4, 121, 324, 529, 687, 741, 825, 864
LmnI	GCTCC	2 cut(s)	35, 851
Lsp1109I	GCAGC	4 cut(s)	319, 322, 325, 682
LweI	GCATC	2 cut(s)	384, 451
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	8, 623
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	8 cut(s)	6, 123, 326, 531, 689, 743, 827, 866
MboI	GATC	8 cut(s)	4, 121, 324, 529, 687, 741, 825, 864
MboII	GAAGA	2 cut(s)	445, 796
MflI	RGATCY	3 cut(s)	4, 741, 825
MhlI	GDGCHC	3 cut(s)	59, 452, 848
MluCI	AATT	2 cut(s)	510, 876
MlyI	GAGTC	2 cut(s)	166, 540
MnlI	CCTC	7 cut(s)	16, 152, 381, 394, 439, 929, 938
Mph1103I	ATGCAT	2 cut(s)	466, 955
MroXI	GAANNNNTTC	1 cut(s)	792
MseI	TTAA	1 cut(s)	656
MspR9I	CCNGG	4 cut(s)	94, 454, 759, 798
Mva1269I	GAATGC	1 cut(s)	792
MvaI	CCWGG	4 cut(s)	94, 454, 759, 798
MwoI	GCNNNNNNNGC	7 cut(s)	338, 344, 353, 506, 602, 611, 798
NdeII	GATC	8 cut(s)	4, 121, 324, 529, 687, 741, 825, 864
NlaIII	CATG	3 cut(s)	688, 821, 957
NlaIV	GGNNCC	5 cut(s)	37, 98, 140, 451, 743
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	45
NsiI	ATGCAT	2 cut(s)	466, 955
NspI	RCATGY	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	821
PagI	TCATGA	1 cut(s)	684
PaqCI	CACCTGC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	3 cut(s)	11, 480, 754
PflMI	CCANNNNNTGG	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	757
PkrI	GCNGC	4 cut(s)	334, 337, 340, 697
PleI	GAGTC	2 cut(s)	166, 540
PpsI	GAGTC	2 cut(s)	166, 540
Psp124BI	GAGCTC	1 cut(s)	848
Psp6I	CCWGG	4 cut(s)	92, 452, 757, 796
PspFI	CCCAGC	2 cut(s)	341, 366
PspGI	CCWGG	4 cut(s)	92, 452, 757, 796
PspN4I	GGNNCC	5 cut(s)	37, 98, 140, 451, 743
PstNI	CAGNNNCTG	2 cut(s)	202, 373
PsuI	RGATCY	3 cut(s)	4, 741, 825
RsaI	GTAC	4 cut(s)	71, 98, 134, 310
RsaNI	GTAC	4 cut(s)	70, 97, 133, 309
SacI	GAGCTC	1 cut(s)	848
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	4 cut(s)	333, 336, 339, 696
Sau3AI	GATC	8 cut(s)	4, 121, 324, 529, 687, 741, 825, 864
SchI	GAGTC	2 cut(s)	166, 540
ScrFI	CCNGG	4 cut(s)	94, 454, 759, 798
SduI	GDGCHC	3 cut(s)	59, 452, 848
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	2 cut(s)	384, 451
SfcI	CTRYAG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	821
Sse9I	AATT	2 cut(s)	510, 876
SsiI	CCGC	2 cut(s)	733, 849
SspMI	CTAG	2 cut(s)	8, 623
SstI	GAGCTC	1 cut(s)	848
StyD4I	CCNGG	4 cut(s)	92, 452, 757, 796
StyI	CCWWGG	2 cut(s)	723, 737
TaaI	ACNGT	5 cut(s)	51, 192, 523, 652, 838
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	170
TaqII	GACCGA	1 cut(s)	562
TasI	AATT	2 cut(s)	510, 876
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	11, 480, 754
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	5 cut(s)	54, 195, 358, 528, 775
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	4 cut(s)	332, 335, 338, 695
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	217, 573
TspRI	CASTG	5 cut(s)	54, 195, 358, 528, 775
Van91I	CCANNNNNTGG	1 cut(s)	373
XagI	CCTNNNNNAGG	2 cut(s)	388, 443
XapI	RAATTY	1 cut(s)	876
XbaI	TCTAGA	1 cut(s)	7
XceI	RCATGY	1 cut(s)	821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	2 cut(s)	8, 623
ZraI	GACGTC	1 cut(s)	109
Zsp2I	ATGCAT	2 cut(s)	466, 955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.