Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025654.1

Orthogroup ID

OG0003299

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1228

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025654.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 742 bp

atggacaccaagattggctccctcgacgtttgcaaggccgacaaccacgacgtcggttgtttaccaagcagcgccgcttgcaccgtccaaaactcggtcccctccacaacgttcaactccgccgacgccaccctcggccgccacctggcacgccgcctcgtccaaatcggcgtcaccgacgtcttcaccgtccccggcgacttcaacttgacccttctcgaccacctcatcgccgagcccgggctcaccaacattggctgctgcaatgagctcaacgccggatacgcagccgacggctacgcgcggtcgcgtggcgtcggggcgtgtgcggtgactttcaccgtcggtggactgagtgtgttgaacgcgatcgctggcgcgtacagtgagaacttgccggtgatttgtattgttggagggcccaactccaatgattacggaactaacaggattcttcaccatactattgggttgccggactttagccaagagctccggtgctttcagactgtgacttgctttcaggctgtggtgaataatctggaggatgcacatgagttgattgatacggcaatttcgactgcgttgaaagaaagcaagcctgtgtatatcagcataggctgcaacttggctgggattcctcatcctacttttagccgtgaccctgttccattttcattgtctccaaaattgagcaataagatgggattagaggctgcagtggaggcagcggcagagttct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009628 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0034059 GO:0036293 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

247

Amino Acids

25.93

Weight (kDa)

5.0

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33070 AT5G01320 AT5G01330
fragaria_vesca	FvH4_6g11100
malus_domestica	MD04G1159900.v1.1 MD04G1160100.v1.1 MD12G1172400.v1.1 MD12G1172500.v1.1 MD12G1173200.v1.1
prunus_persica	Prupe.6G280800_v2.0.a1 Prupe.6G280800_v2.0.a1
pyrus_communis	pycom04g14330 pycom04g14350 pycom12g16360 pycom12g16370 pycom17g25190
rosa_chinensis	RchiOBHm_Chr3g0462531 RchiOBHm_Chr7g0223061
rosa_laevigata	RLG00000024851 RLG00000024852
rosa_multiflora	Rmu_sc0003624.1_g000016 Rmu_sc0011346.1_g000001 Rmu_sc0025654.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335980 Rroxscaffold_6G00417420 Rroxscaffold_6G00417440 Rroxscaffold_6G00417450
rosa_rugosa	Rorug03G0057300 Rorug03G0057400 Rorug03G0141600
rosa_samantha	Rh3AG115300 Rh3BG118700 Rh3CG122100 Rh3DG120800 Rh4AG098400
rosa_wichuraiana	Rw3G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	54, 183
AccII	CGCG	5 cut(s)	302, 304, 310, 368, 380
AciI	CCGC	7 cut(s)	75, 120, 139, 154, 304, 329, 731
AclI	AACGTT	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	136
AcyI	GRCGYC	5 cut(s)	51, 126, 171, 180, 315
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	3 cut(s)	94, 145, 240
AgsI	TTSAA	4 cut(s)	115, 205, 364, 589
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	2 cut(s)	271, 493
AluI	AGCT	2 cut(s)	271, 493
Alw21I	GWGCWC	2 cut(s)	273, 495
Alw26I	GTCTC	1 cut(s)	687
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	36, 136, 419
ApaI	GGGCCC	1 cut(s)	423
ApeKI	GCWGC	7 cut(s)	69, 258, 261, 287, 621, 716, 728
AsiSI	GCGATCGC	1 cut(s)	372
AspLEI	GCGC	3 cut(s)	74, 304, 380
AspS9I	GGNCC	3 cut(s)	97, 419, 420
AsuC2I	CCSGG	3 cut(s)	195, 240, 241
AsuHPI	GGTGA	8 cut(s)	166, 178, 238, 331, 343, 412, 449, 544
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	423
BanII	GRGCYC	5 cut(s)	240, 246, 273, 423, 495
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	273, 495
BbvI	GCAGC	6 cut(s)	81, 245, 248, 299, 608, 703
BccI	CCATC	1 cut(s)	697
BceAI	ACGGC	3 cut(s)	310, 585, 642
BciT130I	CCWGG	1 cut(s)	146
BciVI	GTATCC	1 cut(s)	275
BcnI	CCSGG	3 cut(s)	195, 240, 241
BcoDI	GTCTC	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	717
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	275
Bme1390I	CCNGG	4 cut(s)	146, 195, 240, 241
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	3 cut(s)	97, 419, 420
BmiI	GGNNCC	3 cut(s)	19, 99, 421
BmrFI	CCNGG	4 cut(s)	146, 195, 240, 241
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	563
BpuMI	CCSGG	3 cut(s)	195, 240, 241
BsaHI	GRCGYC	5 cut(s)	51, 126, 171, 180, 315
BsaJI	CCNNGG	3 cut(s)	133, 193, 239
BsaWI	WCCGGW	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 145, 240
Bse118I	RCCGGY	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	3 cut(s)	133, 193, 239
BseGI	GGATG	2 cut(s)	553, 643
BseLI	CCNNNNNNNGG	3 cut(s)	94, 145, 240
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	423
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	6 cut(s)	81, 245, 248, 299, 608, 703
BseYI	CCCAGC	1 cut(s)	632
Bsh1236I	CGCG	5 cut(s)	302, 304, 310, 368, 380
Bsh1285I	CGRYCG	3 cut(s)	139, 308, 372
BshFI	GGCC	3 cut(s)	38, 138, 421
BsiEI	CGRYCG	3 cut(s)	139, 308, 372
BsiHKAI	GWGCWC	2 cut(s)	273, 495
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	6 cut(s)	195, 240, 279, 398, 476, 496
BslFI	GGGAC	2 cut(s)	83, 176
BslI	CCNNNNNNNGG	3 cut(s)	94, 145, 240
BsmAI	GTCTC	1 cut(s)	687
BsmFI	GGGAC	2 cut(s)	83, 176
BsnI	GGCC	3 cut(s)	38, 138, 421
BsoBI	CYCGRG	1 cut(s)	239
Bsp120I	GGGCCC	1 cut(s)	419
Bsp1286I	GDGCHC	5 cut(s)	240, 246, 273, 423, 495
Bsp143I	GATC	1 cut(s)	369
BspACI	CCGC	7 cut(s)	75, 120, 139, 154, 304, 329, 731
BspANI	GGCC	3 cut(s)	38, 138, 421
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	5 cut(s)	302, 304, 310, 368, 380
BspLI	GGNNCC	3 cut(s)	19, 99, 421
BspMAI	CTGCAG	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	3 cut(s)	133, 193, 239
BssMI	GATC	1 cut(s)	369
BssNI	GRCGYC	5 cut(s)	51, 126, 171, 180, 315
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	5 cut(s)	85, 190, 343, 386, 511
BstACI	GRCGYC	5 cut(s)	51, 126, 171, 180, 315
BstAPI	GCANNNNNTGC	1 cut(s)	621
BstC8I	GCNNGC	4 cut(s)	79, 151, 376, 599
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	553, 643
BstFNI	CGCG	5 cut(s)	302, 304, 310, 368, 380
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	3 cut(s)	74, 304, 380
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	1 cut(s)	369
BstMCI	CGRYCG	3 cut(s)	139, 308, 372
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 284, 621, 725
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	4 cut(s)	144, 193, 238, 239
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	423
BstUI	CGCG	5 cut(s)	302, 304, 310, 368, 380
BstV1I	GCAGC	6 cut(s)	81, 245, 248, 299, 608, 703
BstV2I	GAAGAC	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstZI	CGGCCG	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	38, 138, 421
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	553, 643
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	2 cut(s)	391, 726
Cac8I	GCNNGC	4 cut(s)	79, 151, 376, 599
CfoI	GCGC	3 cut(s)	74, 304, 380
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	3 cut(s)	97, 419, 420
Cfr9I	CCCGGG	1 cut(s)	239
CseI	GACGC	3 cut(s)	134, 160, 304
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	1 cut(s)	554
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	136
EagI	CGGCCG	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	109
Ecl136II	GAGCTC	2 cut(s)	271, 493
EclXI	CGGCCG	1 cut(s)	136
Eco24I	GRGCYC	5 cut(s)	240, 246, 273, 423, 495
Eco47I	GGWCC	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	136
Eco53kI	GAGCTC	2 cut(s)	271, 493
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	2 cut(s)	271, 493
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	144
EcoT38I	GRGCYC	5 cut(s)	240, 246, 273, 423, 495
FaeI	CATG	1 cut(s)	557
FaiI	YATR	4 cut(s)	462, 555, 609, 617
FaqI	GGGAC	2 cut(s)	83, 176
FatI	CATG	1 cut(s)	553
FokI	GGATG	2 cut(s)	560, 630
FriOI	GRGCYC	5 cut(s)	240, 246, 273, 423, 495
GlaI	GCGC	3 cut(s)	73, 303, 379
GsaI	CCCAGC	1 cut(s)	636
GsuI	CTGGAG	1 cut(s)	563
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	38, 138, 421
HapII	CCGG	6 cut(s)	195, 240, 279, 398, 476, 496
HgaI	GACGC	3 cut(s)	134, 160, 304
HhaI	GCGC	3 cut(s)	74, 304, 380
Hin1I	GRCGYC	5 cut(s)	51, 126, 171, 180, 315
Hin1II	CATG	1 cut(s)	557
Hin6I	GCGC	3 cut(s)	72, 302, 378
HinP1I	GCGC	3 cut(s)	72, 302, 378
HinfI	GANTC	2 cut(s)	451, 637
HpaII	CCGG	6 cut(s)	195, 240, 279, 398, 476, 496
HphI	GGTGA	8 cut(s)	166, 178, 238, 331, 343, 412, 449, 544
Hpy166II	GTNNAC	2 cut(s)	62, 350
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	2 cut(s)	218, 542
Hpy8I	GTNNAC	2 cut(s)	62, 350
Hpy99I	CGWCG	8 cut(s)	29, 53, 56, 128, 182, 296, 320, 347
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	5 cut(s)	85, 190, 343, 386, 511
HpyCH4IV	ACGT	4 cut(s)	27, 51, 110, 180
HpyCH4V	TGCA	6 cut(s)	33, 81, 264, 551, 624, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 284, 621, 725
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	4 cut(s)	27, 51, 110, 180
Hsp92I	GRCGYC	5 cut(s)	51, 126, 171, 180, 315
Hsp92II	CATG	1 cut(s)	557
HspAI	GCGC	3 cut(s)	72, 302, 378
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	23, 498
Lsp1109I	GCAGC	6 cut(s)	81, 245, 248, 299, 608, 703
LweI	GCATC	1 cut(s)	538
MaeII	ACGT	4 cut(s)	27, 51, 110, 180
MaeIII	GTNAC	4 cut(s)	172, 331, 511, 659
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	2 cut(s)	175, 446
MhlI	GDGCHC	5 cut(s)	240, 246, 273, 423, 495
MluCI	AATT	2 cut(s)	573, 689
MmeI	TCCRAC	1 cut(s)	394
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	6 cut(s)	195, 240, 279, 398, 476, 496
MspR9I	CCNGG	4 cut(s)	146, 195, 240, 241
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	5 cut(s)	302, 304, 310, 368, 380
MwoI	GCNNNNNNNGC	4 cut(s)	78, 284, 621, 725
NciI	CCSGG	3 cut(s)	195, 240, 241
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	3 cut(s)	19, 99, 421
NmeAIII	GCCGAG	2 cut(s)	114, 259
NmuCI	GTSAC	4 cut(s)	172, 331, 511, 659
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 186, 575
PfeI	GAWTC	2 cut(s)	451, 637
Ple19I	CGATCG	1 cut(s)	372
Psp124BI	GAGCTC	2 cut(s)	273, 495
Psp1406I	AACGTT	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	3 cut(s)	19, 99, 421
PspOMI	GGGCCC	1 cut(s)	419
PspPI	GGNCC	3 cut(s)	97, 419, 420
PstI	CTGCAG	1 cut(s)	721
PvuI	CGATCG	1 cut(s)	372
RgaI	GCGATCGC	1 cut(s)	372
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SacI	GAGCTC	2 cut(s)	273, 495
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	3 cut(s)	97, 419, 420
ScrFI	CCNGG	4 cut(s)	146, 195, 240, 241
SduI	GDGCHC	5 cut(s)	240, 246, 273, 423, 495
SetI	ASST	8 cut(s)	30, 54, 113, 147, 183, 228, 273, 495
SfaAI	GCGATCGC	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	1 cut(s)	717
SgfI	GCGATCGC	1 cut(s)	372
SinI	GGWCC	1 cut(s)	97
SmaI	CCCGGG	1 cut(s)	241
SrfI	GCCCGGGC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	573, 689
SsiI	CCGC	7 cut(s)	75, 120, 139, 154, 304, 329, 731
SstI	GAGCTC	2 cut(s)	273, 495
StyD4I	CCNGG	4 cut(s)	144, 193, 238, 239
TaaI	ACNGT	5 cut(s)	85, 190, 343, 386, 511
TaiI	ACGT	4 cut(s)	30, 54, 113, 183
TaqI	TCGA	3 cut(s)	24, 219, 578
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	573, 689
TauI	GCSGC	4 cut(s)	77, 141, 156, 734
TfiI	GAWTC	2 cut(s)	451, 637
TscAI	CASTG	2 cut(s)	391, 726
TseFI	GTSAC	4 cut(s)	172, 331, 511, 659
TseI	GCWGC	7 cut(s)	69, 258, 261, 287, 621, 716, 728
Tsp45I	GTSAC	4 cut(s)	172, 331, 511, 659
TspDTI	ATGAA	1 cut(s)	666
TspGWI	ACGGA	1 cut(s)	453
TspMI	CCCGGG	1 cut(s)	239
TspRI	CASTG	2 cut(s)	391, 726
VpaK11BI	GGWCC	1 cut(s)	97
XmaI	CCCGGG	1 cut(s)	239
ZraI	GACGTC	2 cut(s)	52, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.