Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003299

Physical Location & Seq

Genomic Coordinates Reverse (-)

4323364 .. 4326528

Gene Structure 3165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0057300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATGTCCGGCAATTATACCAGCATTGATAACCAAAGCGTCTCGGGATCTGTTCCTGCTGCGGTTCCAGATCCAGGCCACCTCACCGTCAAATTCCAAGATTCACACCTTCAGACATTTCCTCCATCTGAGGCACAAGGGAAGATCTCTAGTGGCGCTCGCCCTCCTCGCGATGCAGATGACACATTTTCAAAACCTGTATCTGGTTCTGATGAACCCCAGCAGAGTGGTTGGCTACGTACTTTCAGTGTATCATCTTACAAGGCATATTTTGATGTTGACACTTCAGATGTTCTAGAGAGGATTAAAGACTCGCTCCTTCCATATAGTGGAGCTTTCAATGAAAAAACAACTAACAATCCAGATTTGTATGGACCTTTCTGGATATGTACCACCCTAATATTTGTTGCAGCTGCCATTGGCACCTTCGTGACATATGTAGCACACAAGGTCAAGAGTGAAGAGTGGGCATATGACATTAATGTAGTGCAATGGTCTGCTGGATTGTTCTATGGTTACGTCACTGTTGTTCCTCTTGTGCTGTATGTAATCCTTAAATACTTCTCGGCACCAGCAGGTCTCGTTCAGCTGTTTTGTCTGTATGGCTACTCCCTGTTTGTCTTTATACCAGCTTTGTGTCTCTCCGTTGTGCCCTTGGAAATTTTCCGATGGGTAATTGCAGGCGTGGCTGGGATCATGTCTGCTACTTTTGTGGCCATAAACCTTCGCGCCCACATTGTTTCAGCAGGTGAAAGCTGGTTCTTCATTGTGGCTGGGATCTTTTTGTTGCAGTTGGCTCTGGCTGTCGTGCTAAAACTCTATTTGTTCACCGTCACAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009628 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0034059 GO:0036293 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

280

Amino Acids

30.68

Weight (kDa)

5.3

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	109 - 270	3.2e-16	Yip1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33070 AT5G01320 AT5G01330
fragaria_vesca	FvH4_6g11100
malus_domestica	MD04G1159900.v1.1 MD04G1160100.v1.1 MD12G1172400.v1.1 MD12G1172500.v1.1 MD12G1173200.v1.1
prunus_persica	Prupe.6G280800_v2.0.a1 Prupe.6G280800_v2.0.a1
pyrus_communis	pycom04g14330 pycom04g14350 pycom12g16360 pycom12g16370 pycom17g25190
rosa_chinensis	RchiOBHm_Chr3g0462531 RchiOBHm_Chr7g0223061
rosa_laevigata	RLG00000024851 RLG00000024852
rosa_multiflora	Rmu_sc0003624.1_g000016 Rmu_sc0011346.1_g000001 Rmu_sc0025654.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335980 Rroxscaffold_6G00417420 Rroxscaffold_6G00417440 Rroxscaffold_6G00417450
rosa_rugosa	Rorug03G0057300 Rorug03G0057400 Rorug03G0141600
rosa_samantha	Rh3AG115300 Rh3BG118700 Rh3CG122100 Rh3DG120800 Rh4AG098400
rosa_wichuraiana	Rw3G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	737
Acc36I	ACCTGC	2 cut(s)	566, 737
AccB1I	GGYRCC	2 cut(s)	422, 568
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccII	CGCG	2 cut(s)	171, 729
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	4 cut(s)	55, 65, 701, 785
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	2 cut(s)	92, 660
AcuI	CTGAAG	2 cut(s)	95, 270
AfaI	GTAC	2 cut(s)	241, 391
AfiI	CCNNNNNNNGG	3 cut(s)	74, 203, 329
AgsI	TTSAA	2 cut(s)	192, 340
AjnI	CCWGG	1 cut(s)	73
AleI	CACNNNNGTG	1 cut(s)	428
AluBI	AGCT	5 cut(s)	335, 413, 589, 632, 756
AluI	AGCT	5 cut(s)	335, 413, 589, 632, 756
Alw26I	GTCTC	3 cut(s)	46, 584, 644
AlwI	GGATC	4 cut(s)	55, 65, 701, 785
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	2 cut(s)	76, 714
ApeKI	GCWGC	3 cut(s)	59, 410, 413
ApoI	RAATTY	2 cut(s)	92, 660
AseI	ATTAAT	1 cut(s)	480
AspLEI	GCGC	2 cut(s)	158, 731
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	76, 761, 820
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	716
BanI	GGYRCC	2 cut(s)	422, 568
BbvI	GCAGC	3 cut(s)	46, 400, 422
BccI	CCATC	2 cut(s)	133, 663
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	46, 584, 644
BfaI	CTAG	3 cut(s)	150, 296, 841
BfoI	RGCGCY	1 cut(s)	159
BfuAI	ACCTGC	2 cut(s)	566, 737
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	3 cut(s)	60, 411, 414
BlsI	GCNGC	3 cut(s)	61, 412, 415
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	3 cut(s)	66, 424, 570
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	654
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 203, 329
Bse3DI	GCAATG	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	654
BseLI	CCNNNNNNNGG	3 cut(s)	74, 203, 329
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	3 cut(s)	46, 400, 422
BseYI	CCCAGC	3 cut(s)	219, 689, 773
Bsh1236I	CGCG	2 cut(s)	171, 729
BshFI	GGCC	2 cut(s)	78, 716
BshNI	GGYRCC	2 cut(s)	422, 568
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	3 cut(s)	74, 203, 329
BsmAI	GTCTC	3 cut(s)	46, 584, 644
BsmBI	CGTCTC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	78, 716
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	5 cut(s)	47, 70, 144, 693, 777
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	2 cut(s)	78, 716
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	2 cut(s)	171, 729
BspLI	GGNNCC	3 cut(s)	66, 424, 570
BspMI	ACCTGC	2 cut(s)	566, 737
BspPI	GGATC	4 cut(s)	55, 65, 701, 785
BspT107I	GGYRCC	2 cut(s)	422, 568
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	5 cut(s)	47, 70, 144, 693, 777
BssT1I	CCWWGG	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	4 cut(s)	88, 526, 832, 838
Bst6I	CTCTTC	1 cut(s)	456
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	160, 682
BstDEI	CTNAG	1 cut(s)	129
BstFNI	CGCG	2 cut(s)	171, 729
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	158, 731
BstKTI	GATC	5 cut(s)	50, 73, 147, 696, 780
BstMAI	GTCTC	3 cut(s)	46, 584, 644
BstMBI	GATC	5 cut(s)	47, 70, 144, 693, 777
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 686
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	654
BstSNI	TACGTA	1 cut(s)	239
BstUI	CGCG	2 cut(s)	171, 729
BstV1I	GCAGC	3 cut(s)	46, 400, 422
BstX2I	RGATCY	4 cut(s)	47, 70, 144, 777
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	4 cut(s)	47, 70, 144, 777
BsuRI	GGCC	2 cut(s)	78, 716
BtgZI	GCGATG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	253, 522
BtuMI	TCGCGA	1 cut(s)	171
BveI	ACCTGC	2 cut(s)	566, 737
Cac8I	GCNNGC	2 cut(s)	160, 682
CfoI	GCGC	2 cut(s)	158, 731
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	240, 390
CviAII	CATG	1 cut(s)	697
CviQI	GTAC	2 cut(s)	240, 390
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	5 cut(s)	49, 72, 146, 695, 779
DpnII	GATC	5 cut(s)	47, 70, 144, 693, 777
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco105I	TACGTA	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	654
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	2 cut(s)	95, 270
Eco88I	CYCGRG	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	654
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	1 cut(s)	700
FatI	CATG	1 cut(s)	696
FauNDI	CATATG	2 cut(s)	436, 472
Fnu4HI	GCNGC	3 cut(s)	60, 411, 414
Fsp4HI	GCNGC	3 cut(s)	60, 411, 414
FspBI	CTAG	3 cut(s)	150, 296, 841
GlaI	GCGC	2 cut(s)	157, 730
GluI	GCNGC	3 cut(s)	60, 411, 414
GsaI	CCCAGC	3 cut(s)	223, 693, 777
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	78, 716
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	158, 731
Hin1II	CATG	1 cut(s)	700
Hin6I	GCGC	2 cut(s)	156, 729
HinP1I	GCGC	2 cut(s)	156, 729
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	2 cut(s)	101, 311
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	3 cut(s)	76, 761, 820
Hpy166II	GTNNAC	2 cut(s)	280, 828
Hpy188I	TCNGA	5 cut(s)	114, 130, 211, 289, 668
Hpy188III	TCNNGA	8 cut(s)	45, 68, 170, 296, 362, 382, 430, 454
Hpy8I	GTNNAC	2 cut(s)	280, 828
HpyAV	CCTTC	4 cut(s)	119, 329, 436, 734
HpyCH4III	ACNGT	4 cut(s)	88, 526, 832, 838
HpyCH4IV	ACGT	2 cut(s)	238, 519
HpyCH4V	TGCA	5 cut(s)	176, 410, 490, 680, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 686
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	2 cut(s)	238, 519
Hsp92II	CATG	1 cut(s)	700
HspAI	GCGC	2 cut(s)	156, 729
Kzo9I	GATC	5 cut(s)	47, 70, 144, 693, 777
LmnI	GCTCC	2 cut(s)	321, 332
Lsp1109I	GCAGC	3 cut(s)	46, 400, 422
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	3 cut(s)	150, 296, 841
MaeII	ACGT	2 cut(s)	238, 519
MaeIII	GTNAC	4 cut(s)	430, 515, 520, 832
MalI	GATC	5 cut(s)	49, 72, 146, 695, 779
MboI	GATC	5 cut(s)	47, 70, 144, 693, 777
MboII	GAAGA	3 cut(s)	154, 473, 754
MflI	RGATCY	4 cut(s)	47, 70, 144, 777
MhlI	GDGCHC	1 cut(s)	654
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	4 cut(s)	13, 92, 660, 675
MluNI	TGGCCA	1 cut(s)	716
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	7 cut(s)	92, 124, 132, 174, 177, 294, 543
Mox20I	TGGCCA	1 cut(s)	716
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	3 cut(s)	306, 480, 555
MslI	CAYNNNNRTG	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	716
MspA1I	CMGCKG	2 cut(s)	413, 589
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	2 cut(s)	171, 729
MwoI	GCNNNNNNNGC	2 cut(s)	168, 686
NdeI	CATATG	2 cut(s)	436, 472
NdeII	GATC	5 cut(s)	47, 70, 144, 693, 777
NlaIII	CATG	1 cut(s)	700
NlaIV	GGNNCC	3 cut(s)	66, 424, 570
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	3 cut(s)	430, 520, 832
NruI	TCGCGA	1 cut(s)	171
OliI	CACNNNNGTG	1 cut(s)	428
PaqCI	CACCTGC	1 cut(s)	737
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	61, 412, 415
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	239
PshBI	ATTAAT	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	73
PspFI	CCCAGC	3 cut(s)	219, 689, 773
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	66, 424, 570
PspPI	GGNCC	1 cut(s)	374
PsuI	RGATCY	4 cut(s)	47, 70, 144, 777
PvuII	CAGCTG	2 cut(s)	413, 589
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	2 cut(s)	241, 391
RsaNI	GTAC	2 cut(s)	240, 390
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	306, 480, 555
SatI	GCNGC	3 cut(s)	60, 411, 414
Sau3AI	GATC	5 cut(s)	47, 70, 144, 693, 777
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	654
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	428
SnaBI	TACGTA	1 cut(s)	239
Sse9I	AATT	4 cut(s)	13, 92, 660, 675
SsiI	CCGC	1 cut(s)	62
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	3 cut(s)	150, 296, 841
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	4 cut(s)	88, 526, 832, 838
TaiI	ACGT	2 cut(s)	241, 522
TasI	AATT	4 cut(s)	13, 92, 660, 675
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	306, 480, 555
Tru9I	TTAA	3 cut(s)	306, 480, 555
TscAI	CASTG	2 cut(s)	253, 529
TseFI	GTSAC	3 cut(s)	430, 520, 832
TseI	GCWGC	3 cut(s)	59, 410, 413
Tsp45I	GTSAC	3 cut(s)	430, 520, 832
TspDTI	ATGAA	3 cut(s)	228, 357, 754
TspGWI	ACGGA	1 cut(s)	634
TspRI	CASTG	2 cut(s)	253, 529
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	2 cut(s)	92, 660
XbaI	TCTAGA	1 cut(s)	295
XspI	CTAG	3 cut(s)	150, 296, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.