Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003299

Physical Location & Seq

Genomic Coordinates Reverse (-)

3700674 .. 3705937

Gene Structure 5264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTGCTTCGGTTTTGAGTGGCTTTCGGTTTTGGGGCTCCTTGGTGGTCGAAATTGCTTCGTTAACGGCACCGAGAGATCTATGGCGGAGTTGGATAAGCGAAAACGCACGGTTAAGGTGGGATTGTTGTATGGCATGGTGGGGCCCAGGCTTGGCTTGGGCCAGCTGACGGATTTGGAGTGGGCCTCTCCTCTCCTCTTGGGGCTACTTTTTTGGACCTTATACCAAAGGAGGGTCTCCACTACCCTCTACGTATTTGAATGTATAATGAGTAGGACTATATGTACGTATCACTTGTGGGTACTAGCACTAGCTTCTTATTTGTCTGTGGCCTTAAATGACAGCGGAAGGATTATATTGGAGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.93

Weight (kDa)

8.42

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33070 AT5G01320 AT5G01330
fragaria_vesca	FvH4_6g11100
malus_domestica	MD04G1159900.v1.1 MD04G1160100.v1.1 MD12G1172400.v1.1 MD12G1172500.v1.1 MD12G1173200.v1.1
prunus_persica	Prupe.6G280800_v2.0.a1 Prupe.6G280800_v2.0.a1
pyrus_communis	pycom04g14330 pycom04g14350 pycom12g16360 pycom12g16370 pycom17g25190
rosa_chinensis	RchiOBHm_Chr3g0462531 RchiOBHm_Chr7g0223061
rosa_laevigata	RLG00000024851 RLG00000024852
rosa_multiflora	Rmu_sc0003624.1_g000016 Rmu_sc0011346.1_g000001 Rmu_sc0025654.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335980 Rroxscaffold_6G00417420 Rroxscaffold_6G00417440 Rroxscaffold_6G00417450
rosa_rugosa	Rorug03G0057300 Rorug03G0057400 Rorug03G0141600
rosa_samantha	Rh3AG115300 Rh3BG118700 Rh3CG122100 Rh3DG120800 Rh4AG098400
rosa_wichuraiana	Rw3G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AciI	CCGC	2 cut(s)	86, 345
AfaI	GTAC	2 cut(s)	286, 303
AfiI	CCNNNNNNNGG	3 cut(s)	152, 169, 232
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	2 cut(s)	166, 314
AluI	AGCT	2 cut(s)	166, 314
Alw26I	GTCTC	1 cut(s)	241
AoxI	GGCC	4 cut(s)	143, 160, 183, 330
ApaI	GGGCCC	1 cut(s)	147
AspS9I	GGNCC	5 cut(s)	143, 144, 160, 183, 216
AvaII	GGWCC	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	39, 147
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	305, 311
BglII	AGATCT	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	5 cut(s)	143, 144, 160, 183, 216
BmiI	GGNNCC	4 cut(s)	38, 70, 144, 145
BmrFI	CCNGG	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BsaAI	YACGTR	2 cut(s)	253, 288
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	40, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 169, 232
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	40, 146
BseLI	CCNNNNNNNGG	3 cut(s)	152, 169, 232
BseRI	GAGGAG	2 cut(s)	180, 185
BseSI	GKGCMC	1 cut(s)	147
BshFI	GGCC	4 cut(s)	145, 162, 185, 332
BshNI	GGYRCC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	152, 169, 232
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	4 cut(s)	145, 162, 185, 332
Bso31I	GGTCTC	1 cut(s)	241
Bsp120I	GGGCCC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	39, 147
Bsp143I	GATC	1 cut(s)	77
BspACI	CCGC	2 cut(s)	86, 345
BspANI	GGCC	4 cut(s)	145, 162, 185, 332
BspLI	GGNNCC	4 cut(s)	38, 70, 144, 145
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	40, 146
BssMI	GATC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	112
BstBAI	YACGTR	2 cut(s)	253, 288
BstC8I	GCNNGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	147
BstSNI	TACGTA	2 cut(s)	253, 288
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	4 cut(s)	145, 162, 185, 332
Cac8I	GCNNGC	1 cut(s)	164
Cfr13I	GGNCC	5 cut(s)	143, 144, 160, 183, 216
Csp6I	GTAC	2 cut(s)	285, 302
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	2 cut(s)	285, 302
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	101
Eco105I	TACGTA	2 cut(s)	253, 288
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	2 cut(s)	39, 147
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	2 cut(s)	39, 147
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	1 cut(s)	139
FaiI	YATR	8 cut(s)	83, 132, 137, 223, 266, 281, 283, 356
FatI	CATG	1 cut(s)	135
FriOI	GRGCYC	2 cut(s)	39, 147
FspBI	CTAG	2 cut(s)	305, 311
HaeIII	GGCC	4 cut(s)	145, 162, 185, 332
Hin1II	CATG	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HpaI	GTTAAC	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	2 cut(s)	252, 287
HpySE526I	ACGT	2 cut(s)	252, 287
Hsp92II	CATG	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	3 cut(s)	133, 160, 176
MaeI	CTAG	2 cut(s)	305, 311
MaeII	ACGT	2 cut(s)	252, 287
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	2 cut(s)	39, 147
MluCI	AATT	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	196, 201, 206, 225, 257
MseI	TTAA	3 cut(s)	63, 114, 335
MspA1I	CMGCKG	2 cut(s)	166, 345
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	4 cut(s)	38, 70, 144, 145
Ppu21I	YACGTR	2 cut(s)	253, 288
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	4 cut(s)	38, 70, 144, 145
PspOMI	GGGCCC	1 cut(s)	143
PspPI	GGNCC	5 cut(s)	143, 144, 160, 183, 216
PsuI	RGATCY	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	286, 303
RsaNI	GTAC	2 cut(s)	285, 302
SaqAI	TTAA	3 cut(s)	63, 114, 335
Sau3AI	GATC	1 cut(s)	77
Sau96I	GGNCC	5 cut(s)	143, 144, 160, 183, 216
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	2 cut(s)	39, 147
SetI	ASST	6 cut(s)	120, 168, 221, 255, 290, 316
SinI	GGWCC	1 cut(s)	216
SnaBI	TACGTA	2 cut(s)	253, 288
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	86, 345
SspMI	CTAG	2 cut(s)	305, 311
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	2 cut(s)	255, 290
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	52
Tru1I	TTAA	3 cut(s)	63, 114, 335
Tru9I	TTAA	3 cut(s)	63, 114, 335
TspGWI	ACGGA	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	2 cut(s)	305, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.