Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003299

Physical Location & Seq

Genomic Coordinates Forward (+)

18724980 .. 18725913

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTGTCAAGTGAAACTGCTGTGATTGCTGAGACAGGGGACTCATGGTTTAACTGCCAGAAACTGAAATTGCCGGCTGGTTGCGGGTATGAGTTCCAAATGCAATATGGATCAATCGGTTGGTCAGTTGGAGCAACTCTTGGGTATGCTCAGGCTGTTCCTGAGAAGCGTGTGATTGCTTTCATCGGTGACGGGAGTTTCCAGGTGACTGCTCAAGATGTGTCCACCATGATCCGAAATGGGCAGAAGACCATCATCTTCCTGATAAACAACGGCGGGTACACAATTGAGGTGGAGATCCATGACGGACCCTACAATGTGATCAAGAACTGGAACTACACTGGACTGGTTGATGCCATCCACAATGGGGAGGGCAAGTGCTGGACAACCAAGGTCCGTTGCGAAGAGGATCTGATCGAAGCGATTGAGACTGCAACCGGGGCAAAGAAGGATAGCTTGTGCTTCATAGAGGTGATAGTCCACAAGGATGATACCAGCAAAGAGTTGCTTGAGTGGGGGTCTAGGGTTTCTGCTGCCAACAGCCGCCCACCCAACCCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009628 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0034059 GO:0036293 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

188

Amino Acids

20.53

Weight (kDa)

4.97

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33070 AT5G01320 AT5G01330
fragaria_vesca	FvH4_6g11100
malus_domestica	MD04G1159900.v1.1 MD04G1160100.v1.1 MD12G1172400.v1.1 MD12G1172500.v1.1 MD12G1173200.v1.1
prunus_persica	Prupe.6G280800_v2.0.a1 Prupe.6G280800_v2.0.a1
pyrus_communis	pycom04g14330 pycom04g14350 pycom12g16360 pycom12g16370 pycom17g25190
rosa_chinensis	RchiOBHm_Chr3g0462531 RchiOBHm_Chr7g0223061
rosa_laevigata	RLG00000024851 RLG00000024852
rosa_multiflora	Rmu_sc0003624.1_g000016 Rmu_sc0011346.1_g000001 Rmu_sc0025654.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335980 Rroxscaffold_6G00417420 Rroxscaffold_6G00417440 Rroxscaffold_6G00417450
rosa_rugosa	Rorug03G0057300 Rorug03G0057400 Rorug03G0141600
rosa_samantha	Rh3AG115300 Rh3BG118700 Rh3CG122100 Rh3DG120800 Rh4AG098400
rosa_wichuraiana	Rw3G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	84, 276, 544
AclWI	GGATC	4 cut(s)	118, 226, 292, 417
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	456
AluI	AGCT	1 cut(s)	456
Alw26I	GTCTC	2 cut(s)	26, 422
AlwI	GGATC	4 cut(s)	118, 226, 292, 417
AlwNI	CAGNNNCTG	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	533
AspS9I	GGNCC	2 cut(s)	308, 394
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	3 cut(s)	200, 217, 484
AvaII	GGWCC	2 cut(s)	308, 394
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	2 cut(s)	260, 365
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	26, 422
BfaI	CTAG	1 cut(s)	522
BisI	GCNGC	2 cut(s)	534, 544
BlsI	GCNGC	2 cut(s)	535, 545
Bme1390I	CCNGG	2 cut(s)	203, 439
Bme18I	GGWCC	2 cut(s)	308, 394
BmgT120I	GGNCC	2 cut(s)	308, 394
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	203, 439
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	198, 530
BpuMI	CCSGG	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	390, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	3 cut(s)	335, 346, 351
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	390, 438
BseGI	GGATG	2 cut(s)	357, 493
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	3 cut(s)	21, 153, 164
BseNI	ACTGG	3 cut(s)	335, 346, 351
BseXI	GCAGC	1 cut(s)	520
BsiSI	CCGG	2 cut(s)	74, 438
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	26, 422
BsmFI	GGGAC	1 cut(s)	53
Bsp143I	GATC	6 cut(s)	110, 231, 297, 321, 409, 414
BspACI	CCGC	3 cut(s)	84, 276, 544
BspCNI	CTCAG	3 cut(s)	22, 154, 163
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	4 cut(s)	118, 226, 292, 417
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	3 cut(s)	335, 346, 351
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	390, 438
BssMI	GATC	6 cut(s)	110, 231, 297, 321, 409, 414
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	4 cut(s)	30, 150, 162, 558
BstF5I	GGATG	2 cut(s)	357, 493
BstKTI	GATC	6 cut(s)	113, 234, 300, 324, 412, 417
BstMAI	GTCTC	2 cut(s)	26, 422
BstMBI	GATC	6 cut(s)	110, 231, 297, 321, 409, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 440
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	201, 437
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	297, 409
BstYI	RGATCY	2 cut(s)	297, 409
BtsCI	GGATG	2 cut(s)	357, 493
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	308, 394
Csp6I	GTAC	1 cut(s)	280
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	3 cut(s)	45, 229, 302
CviJI	RGCY	4 cut(s)	77, 155, 456, 543
CviKI_1	RGCY	4 cut(s)	77, 155, 456, 543
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	4 cut(s)	30, 150, 162, 558
DpnI	GATC	6 cut(s)	112, 233, 299, 323, 411, 416
DpnII	GATC	6 cut(s)	110, 231, 297, 321, 409, 414
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	308, 394
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	48, 232, 305
FaiI	YATR	7 cut(s)	46, 90, 108, 147, 230, 303, 467
FalI	AAGNNNNNCTT	4 cut(s)	440, 472, 492, 524
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	44, 228, 301
FauI	CCCGC	2 cut(s)	77, 269
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	534, 544
FokI	GGATG	2 cut(s)	344, 500
Fsp4HI	GCNGC	2 cut(s)	534, 544
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	2 cut(s)	534, 544
HapII	CCGG	2 cut(s)	74, 438
Hin1II	CATG	3 cut(s)	48, 232, 305
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	2 cut(s)	74, 438
HphI	GGTGA	3 cut(s)	200, 217, 484
Hpy166II	GTNNAC	3 cut(s)	225, 282, 481
Hpy188I	TCNGA	2 cut(s)	236, 414
Hpy188III	TCNNGA	4 cut(s)	161, 215, 262, 325
Hpy8I	GTNNAC	3 cut(s)	225, 282, 481
HpyAV	CCTTC	1 cut(s)	442
HpyCH4V	TGCA	2 cut(s)	103, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 440
HpyF3I	CTNAG	4 cut(s)	30, 150, 162, 558
Hsp92II	CATG	3 cut(s)	48, 232, 305
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	6 cut(s)	110, 231, 297, 321, 409, 414
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	188, 205
MalI	GATC	6 cut(s)	112, 233, 299, 323, 411, 416
MboI	GATC	6 cut(s)	110, 231, 297, 321, 409, 414
MboII	GAAGA	3 cut(s)	250, 259, 416
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	2 cut(s)	297, 409
MluCI	AATT	2 cut(s)	68, 285
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	283, 364, 400, 463
MroNI	GCCGGC	1 cut(s)	73
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	2 cut(s)	470, 486
MspI	CCGG	2 cut(s)	74, 438
MspR9I	CCNGG	2 cut(s)	203, 439
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	26, 440
NaeI	GCCGGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	6 cut(s)	110, 231, 297, 321, 409, 414
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	3 cut(s)	48, 232, 305
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	188, 205
PdiI	GCCGGC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	535, 545
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	2 cut(s)	308, 394
PsrI	GAACNNNNNNTAC	2 cut(s)	320, 352
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	297, 409
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	470, 486
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	534, 544
Sau3AI	GATC	6 cut(s)	110, 231, 297, 321, 409, 414
Sau96I	GGNCC	2 cut(s)	308, 394
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	203, 439
SetI	ASST	5 cut(s)	207, 294, 396, 458, 474
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	2 cut(s)	308, 394
SmiMI	CAYNNNNRTG	2 cut(s)	470, 486
SmlI	CTYRAG	2 cut(s)	213, 509
SmoI	CTYRAG	2 cut(s)	213, 509
Sse9I	AATT	2 cut(s)	68, 285
SsiI	CCGC	3 cut(s)	84, 276, 544
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	201, 437
StyI	CCWWGG	1 cut(s)	390
TaqI	TCGA	1 cut(s)	417
TasI	AATT	2 cut(s)	68, 285
TauI	GCSGC	1 cut(s)	546
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	2 cut(s)	188, 205
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	2 cut(s)	188, 205
TspDTI	ATGAA	2 cut(s)	172, 454
TspGWI	ACGGA	2 cut(s)	321, 386
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	308, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.