Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

7218999 .. 7220125

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCAGAATCACTTGCTTCAGATACTGGCTCTCTTTGCAATGGAAACCCCTGTCAGTTTGGATGCAGAAGACATCAGAAACGAGAAGGTTAAAGTTTTACGCTCTATGAGGCCACTACAACTTGAAAATGTGGTCACAGGGCAATACAAGAGTCATGTTAGAGGTGGTATTACTTACCCGGCATACACTGATGACAAGACGGTACCCAAAGACAGCTTGACTCCAACATTTGCGGCAGCTGCTCTCTTCATAGACAATGCAAGATGGGATGGGGTGCCTTTCTTGATGAAGGCCGGGAAAGCATTACATAATAAGAGGGCTGAGATAAGGGTACAGTTTCGACATGTGCCTGGAAACTTGTATCGAAATATTGGAACGGATCTTGATCGCACGACAAATGAGCTTGTTATCCGAGTACAGCCTGATGAAGCTATTGTCCTGACGATCAATAACAAAGTCCCTGGTCTTGGAATGAGGTTGGACAGGAGCAATCTAAATCTCCACTACGCAGCCAGATATTCAAATGAGATTCCGGATGCTTATGAGAGGCTTCTGCTGGATGCTATTGAAGGGGAAAGGAGGCTGTTTATTCGGAGTGATGAACTTGATGCAGCTTGGGCACTCTTCACACCCTTATTGAAAGAGATTGAAGAGAAGAAGGTTATTCCCGAATACTATCCTTATGGAAGCAGAGGTCCTGTCGGGGCACACTATCTTGCAGCAAGATACAAAGTCCGGTGGGGTGATGTTGGTGTGGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

255

Amino Acids

28.89

Weight (kDa)

7.89

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_C	PF02781	1 - 247	2.4e-88	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	202
AccB1I	GGYRCC	2 cut(s)	202, 274
AccIII	TCCGGA	1 cut(s)	532
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	387
AfaI	GTAC	3 cut(s)	204, 333, 417
AfiI	CCNNNNNNNGG	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	5 cut(s)	125, 522, 569, 640, 650
AjnI	CCWGG	2 cut(s)	349, 460
AluBI	AGCT	5 cut(s)	216, 239, 403, 431, 614
AluI	AGCT	5 cut(s)	216, 239, 403, 431, 614
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	2 cut(s)	110, 291
ApeKI	GCWGC	5 cut(s)	236, 239, 509, 611, 719
Asp718I	GGTACC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	695
AsuC2I	CCSGG	2 cut(s)	179, 295
AsuHPI	GGTGA	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	695
BaeGI	GKGCMC	2 cut(s)	622, 709
BanI	GGYRCC	2 cut(s)	202, 274
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	5 cut(s)	226, 248, 521, 623, 731
BccI	CCATC	2 cut(s)	258, 263
BciT130I	CCWGG	2 cut(s)	351, 462
BcnI	CCSGG	2 cut(s)	179, 295
BisI	GCNGC	6 cut(s)	234, 237, 240, 510, 612, 720
BlsI	GCNGC	6 cut(s)	235, 238, 241, 511, 613, 721
Bme1390I	CCNGG	4 cut(s)	179, 295, 351, 462
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	2 cut(s)	204, 276
BmrFI	CCNGG	4 cut(s)	179, 295, 351, 462
BmsI	GCATC	4 cut(s)	52, 526, 550, 598
BpiI	GAAGAC	1 cut(s)	75
BpuMI	CCSGG	2 cut(s)	179, 295
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	460
BsaWI	WCCGGW	2 cut(s)	532, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	351, 462
BseDI	CCNNGG	1 cut(s)	460
BseGI	GGATG	4 cut(s)	67, 274, 541, 565
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	30
BseSI	GKGCMC	2 cut(s)	622, 709
BseXI	GCAGC	5 cut(s)	226, 248, 521, 623, 731
BshFI	GGCC	2 cut(s)	112, 293
BshNI	GGYRCC	2 cut(s)	202, 274
BsiSI	CCGG	4 cut(s)	179, 294, 533, 736
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	112, 293
Bsp1286I	GDGCHC	2 cut(s)	622, 709
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	379, 385, 444
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	2 cut(s)	112, 293
BspCNI	CTCAG	1 cut(s)	313
BspEI	TCCGGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	204, 276
BspPI	GGATC	1 cut(s)	387
BspT107I	GGYRCC	2 cut(s)	202, 274
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	3 cut(s)	379, 385, 444
Bst2UI	CCWGG	2 cut(s)	351, 462
Bst4CI	ACNGT	2 cut(s)	202, 336
Bst6I	CTCTTC	3 cut(s)	251, 629, 645
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	4 cut(s)	67, 274, 541, 565
BstKTI	GATC	3 cut(s)	382, 388, 447
BstMBI	GATC	3 cut(s)	379, 385, 444
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 239, 299, 617
BstNI	CCWGG	2 cut(s)	351, 462
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	4 cut(s)	177, 293, 349, 460
BstSLI	GKGCMC	2 cut(s)	622, 709
BstV1I	GCAGC	5 cut(s)	226, 248, 521, 623, 731
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	112, 293
BtsCI	GGATG	4 cut(s)	67, 274, 541, 565
BtsIMutI	CAGTG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	3 cut(s)	203, 332, 416
CviAII	CATG	2 cut(s)	155, 344
CviQI	GTAC	3 cut(s)	203, 332, 416
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	381, 387, 446
DpnII	GATC	3 cut(s)	379, 385, 444
Eam1104I	CTCTTC	3 cut(s)	251, 629, 645
EarI	CTCTTC	3 cut(s)	251, 629, 645
Eco47I	GGWCC	1 cut(s)	695
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	349, 460
FaeI	CATG	2 cut(s)	158, 347
FaiI	YATR	8 cut(s)	107, 156, 184, 251, 309, 345, 543, 684
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	2 cut(s)	154, 343
Fnu4HI	GCNGC	6 cut(s)	234, 237, 240, 510, 612, 720
FokI	GGATG	4 cut(s)	74, 281, 548, 572
Fsp4HI	GCNGC	6 cut(s)	234, 237, 240, 510, 612, 720
GluI	GCNGC	6 cut(s)	234, 237, 240, 510, 612, 720
HaeIII	GGCC	2 cut(s)	112, 293
HapII	CCGG	4 cut(s)	179, 294, 533, 736
Hin1II	CATG	2 cut(s)	158, 347
HinfI	GANTC	4 cut(s)	7, 151, 220, 529
HpaII	CCGG	4 cut(s)	179, 294, 533, 736
HphI	GGTGA	1 cut(s)	755
Hpy188I	TCNGA	4 cut(s)	21, 77, 413, 594
Hpy188III	TCNNGA	5 cut(s)	283, 383, 439, 533, 668
HpyAV	CCTTC	4 cut(s)	79, 283, 563, 652
HpyCH4III	ACNGT	2 cut(s)	202, 336
HpyCH4V	TGCA	6 cut(s)	4, 38, 65, 260, 611, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 239, 299, 617
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	158, 347
Kpn2I	TCCGGA	1 cut(s)	532
KpnI	GGTACC	1 cut(s)	206
Kzo9I	GATC	3 cut(s)	379, 385, 444
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	5 cut(s)	226, 248, 521, 623, 731
LweI	GCATC	4 cut(s)	52, 526, 550, 598
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	381, 387, 446
MboI	GATC	3 cut(s)	379, 385, 444
MboII	GAAGA	5 cut(s)	80, 238, 616, 662, 667
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	622, 709
MlyI	GAGTC	2 cut(s)	160, 214
MmeI	TCCRAC	2 cut(s)	248, 459
MnlI	CCTC	8 cut(s)	102, 155, 309, 468, 540, 573, 686, 751
MroI	TCCGGA	1 cut(s)	532
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	4 cut(s)	179, 294, 533, 736
MspR9I	CCNGG	4 cut(s)	179, 295, 351, 462
MvaI	CCWGG	2 cut(s)	351, 462
MwoI	GCNNNNNNNGC	4 cut(s)	35, 239, 299, 617
NciI	CCSGG	2 cut(s)	179, 295
NdeII	GATC	3 cut(s)	379, 385, 444
NlaIII	CATG	2 cut(s)	158, 347
NlaIV	GGNNCC	2 cut(s)	204, 276
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	347
PciI	ACATGT	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	7, 529
PkrI	GCNGC	6 cut(s)	235, 238, 241, 511, 613, 721
PleI	GAGTC	2 cut(s)	159, 214
PpsI	GAGTC	2 cut(s)	159, 214
PpuMI	RGGWCCY	1 cut(s)	695
PscI	ACATGT	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	2 cut(s)	349, 460
PspGI	CCWGG	2 cut(s)	349, 460
PspN4I	GGNNCC	2 cut(s)	204, 276
PspPI	GGNCC	1 cut(s)	695
PspPPI	RGGWCCY	1 cut(s)	695
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	204, 333, 417
RsaNI	GTAC	3 cut(s)	203, 332, 416
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	6 cut(s)	234, 237, 240, 510, 612, 720
Sau3AI	GATC	3 cut(s)	379, 385, 444
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	2 cut(s)	160, 214
ScrFI	CCNGG	4 cut(s)	179, 295, 351, 462
SduI	GDGCHC	2 cut(s)	622, 709
SfaNI	GCATC	4 cut(s)	52, 526, 550, 598
SinI	GGWCC	1 cut(s)	695
SsiI	CCGC	1 cut(s)	233
SspI	AATATT	1 cut(s)	370
StyD4I	CCNGG	4 cut(s)	177, 293, 349, 460
TaaI	ACNGT	2 cut(s)	202, 336
TaqI	TCGA	2 cut(s)	340, 364
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	7, 529
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	5 cut(s)	236, 239, 509, 611, 719
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	238, 302, 441, 615
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	695
XceI	RCATGY	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.