Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004874

Physical Location & Seq

Genomic Coordinates Forward (+)

21430773 .. 21432863

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g24240.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGAAAGTTCCCGAAGGATTTACATTGACTAGATTAAATAGTTCTAGATCACGGAACACCCTCTATTTGGCTAAGGCGTTCACTCTGGGCAAATATGGTGAACAACGAATATTCCTTTGCATGTTCATTAAGAAGTCAAATTTCAAATTTATGATCGTTGCACTTGAGAAAACTGTCGCACACCTGAGGTCCGAATTTGAGATGAAAGATCTTGGGAAAAATCAATACTTTCTTGACCTGGAGATCGAGCATTGTTTGGATGGAATCCTAGCACATCATGAAGCCTTTGAGTACTCCTATGGTCTTTCGATAGCTAGAGATTTTGGAATCCGAAGTTTATTGTACTTAGCTCAGTGCACTAGACCCAACATCTCCTTCCCTGTTAATCTTTTGGTGTTAAAGACATCTTCCACTACCTTAAGGGTAAGGTGTCACAACCCCTCGGTTCTTGAGTTGATTCTTGCTTTGTTGGTTATGTCGACGCAAGGTACTTATCTTACCCATGCAAGGCACGCTTCTTGGAGGTCAATCAAACAGACCTTACTTGCCTCTTCTTTGAACCATGTTGAAATACTCGCCTTGCATGAAGCTACTCGAGAGTGTTTCTGGCTAAAAGCAATTGTGGGACATATTCGAAGTATTTGCAGTCCTTATTGCATCATTACCATCTCTACAACGACCTATGAAGATATTGTAGGATGTATCGAACAACTGAAGCAGGGATACGTTAAAGAAGACAACACCAAGCACATTACGTCGAAGTTCTTCTTCTCACATCAACAACAAGAGCATCAGAAGATTGAAGTCAAGCAAATTCGTTCCCAAAACAACCTAGCTGACCTCTTTACCAAATCACTGCCGAGGACGACGTTTCAGAAGCTTGTTGAAGGAATTGATATACGTAAACTTTTTAAGTTGGAGTATCCCGAAGTATACTTGCTTGATCTTAATGTACTCTTTTTCCTTACGATTAGGAGCATTTTTCCTTTTAGGTTTTTGCTACCTGACGAGGTTTTGACGAGACACCCATCCTGGGTTAGTCATATCCCTGATGTACATCCAGAAGACGTTTTATTTGACTTTGTACTTTCTCACACACTTTTGCTTAGACTATGGGTTTTCATCCCCCCTTGGGTTTTACCATACGTGTTCCCAGAATCATTGTCGACGAGTCAACTTCCTCAACTCTACCTAATGACGAATCTACTTGAGCATTTACACACTCAATGGGGAAGTGTTATAGATATTATATTAAAGTCTTTCCCTACTAGGATTGTATTTCCTTGGAGGACAAGGATTCTTCTCCCCTTTATTACTAGAAATAAAGGCACTATGTATGGAATAACACATCTCATACACATAGAAAAATCACTACACTTTCTCCACTCTCTCTCTCTCTCTCTCTCTCTCTGCTGCACCCCTCTAATCCCTTGTCAGATAAATTGGCCCCAACAACCACGATTTTTCACCATTTCTCTCCTCTTCTTTTTATCCAAACAAAAGAAAAGGTCGATTTCAATTACTAACTGGGCCTTCCTTTTAATTTCCATATGTGGTAGGGGTATACCCACCCCACTAACCTCCAATGACCCAAGTAATTTGTCCAATAATTTCCCGAAAAGCCTCATGCAACCGACACACTCTCTATCTAGCCAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

554

Amino Acids

64.02

Weight (kDa)

9.28

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004874)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g24240 pycom520g00420
rosa_chinensis	RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831
rosa_multiflora	Rmu_sc0001998.1_g000012
rosa_rugosa	Rorug07G0292400
rosa_wichuraiana	Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	4 cut(s)	479, 933, 1166, 1564
AcsI	RAATTY	4 cut(s)	139, 146, 194, 813
AcuI	CTGAAG	1 cut(s)	734
AfaI	GTAC	6 cut(s)	293, 344, 490, 954, 1056, 1086
AfiI	CCNNNNNNNGG	4 cut(s)	67, 507, 1033, 1132
AflII	CTTAAG	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	1146
AgsI	TTSAA	6 cut(s)	145, 559, 569, 803, 887, 1518
AjnI	CCWGG	2 cut(s)	237, 1031
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	5 cut(s)	314, 350, 590, 836, 880
AluI	AGCT	5 cut(s)	314, 350, 590, 836, 880
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	1015
Alw44I	GTGCAC	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	594
AoxI	GGCC	2 cut(s)	1445, 1530
ApaLI	GTGCAC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	1413
ApoI	RAATTY	4 cut(s)	139, 146, 194, 813
ArsI	GACNNNNNNTTYG	2 cut(s)	1058, 1090
Asp700I	GAANNNNTTC	1 cut(s)	764
AspS9I	GGNCC	3 cut(s)	189, 1446, 1530
AsuHPI	GGTGA	2 cut(s)	110, 1459
AsuII	TTCGAA	1 cut(s)	634
AvaI	CYCGRG	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	189
AxyI	CCTNAGG	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
BbsI	GAAGAC	2 cut(s)	741, 1071
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	1400
BccI	CCATC	3 cut(s)	254, 674, 1036
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BciT130I	CCWGG	2 cut(s)	239, 1033
BciVI	GTATCC	2 cut(s)	716, 933
BcoDI	GTCTC	1 cut(s)	1015
BfaI	CTAG	9 cut(s)	30, 45, 269, 315, 360, 833, 1269, 1317, 1650
BfrI	CTTAAG	1 cut(s)	418
BfuI	GTATCC	2 cut(s)	716, 933
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	1 cut(s)	1414
BlsI	GCNGC	1 cut(s)	1415
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	239, 1033
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	594
BmgT120I	GGNCC	3 cut(s)	189, 1446, 1530
BmiI	GGNNCC	1 cut(s)	1448
BmrFI	CCNGG	2 cut(s)	239, 1033
BmrI	ACTGGG	1 cut(s)	1537
BmsI	GCATC	2 cut(s)	666, 799
BmuI	ACTGGG	1 cut(s)	1537
BpiI	GAAGAC	2 cut(s)	741, 1071
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	634
BpuEI	CTTGAG	3 cut(s)	185, 470, 1229
BsaAI	YACGTR	2 cut(s)	902, 1147
BsaBI	GATNNNNATC	1 cut(s)	1056
BsaJI	CCNNGG	5 cut(s)	441, 860, 1032, 1130, 1283
BsaXI	ACNNNNNCTCC	2 cut(s)	1365, 1395
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 507, 1033, 1132
Bse1I	ACTGG	1 cut(s)	1532
Bse21I	CCTNAGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	1056
BseBI	CCWGG	2 cut(s)	239, 1033
BseDI	CCNNGG	5 cut(s)	441, 860, 1032, 1130, 1283
BseGI	GGATG	5 cut(s)	265, 704, 1028, 1057, 1122
BseJI	GATNNNNATC	1 cut(s)	1056
BseLI	CCNNNNNNNGG	4 cut(s)	67, 507, 1033, 1132
BseMII	CTCAG	2 cut(s)	176, 365
BseNI	ACTGG	1 cut(s)	1532
BseRI	GAGGAG	1 cut(s)	1469
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	1400
BsgI	GTGCAG	1 cut(s)	1399
BshFI	GGCC	2 cut(s)	1447, 1532
BsiHKAI	GWGCWC	1 cut(s)	359
BsiHKCI	CYCGRG	1 cut(s)	594
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	4 cut(s)	67, 507, 1033, 1132
BsmAI	GTCTC	1 cut(s)	1015
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	2 cut(s)	1447, 1532
BsoBI	CYCGRG	1 cut(s)	594
Bsp119I	TTCGAA	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp1407I	TGTACA	1 cut(s)	1054
Bsp143I	GATC	5 cut(s)	47, 153, 208, 243, 943
BspANI	GGCC	2 cut(s)	1447, 1532
BspCNI	CTCAG	2 cut(s)	177, 364
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	1448
BspT104I	TTCGAA	1 cut(s)	634
BspTI	CTTAAG	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	1 cut(s)	1532
BssECI	CCNNGG	5 cut(s)	441, 860, 1032, 1130, 1283
BssMI	GATC	5 cut(s)	47, 153, 208, 243, 943
BssNAI	GTATAC	2 cut(s)	934, 1565
BssT1I	CCWWGG	2 cut(s)	1130, 1283
Bst1107I	GTATAC	2 cut(s)	934, 1565
Bst2UI	CCWGG	2 cut(s)	239, 1033
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	556, 1487
BstAFI	CTTAAG	1 cut(s)	418
BstAUI	TGTACA	1 cut(s)	1054
BstBAI	YACGTR	2 cut(s)	902, 1147
BstBI	TTCGAA	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	5 cut(s)	72, 185, 346, 351, 1106
BstF5I	GGATG	5 cut(s)	265, 704, 1028, 1057, 1122
BstKTI	GATC	5 cut(s)	50, 156, 211, 246, 946
BstMAI	GTCTC	1 cut(s)	1015
BstMBI	GATC	5 cut(s)	47, 153, 208, 243, 943
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	2 cut(s)	239, 1033
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	237, 1031
BstSLI	GKGCMC	1 cut(s)	359
BstSNI	TACGTA	1 cut(s)	902
BstV1I	GCAGC	1 cut(s)	1400
BstV2I	GAAGAC	2 cut(s)	741, 1071
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BstZ17I	GTATAC	2 cut(s)	934, 1565
Bsu36I	CCTNAGG	1 cut(s)	185
BsuI	GTATCC	2 cut(s)	716, 933
BsuRI	GGCC	2 cut(s)	1447, 1532
BtsCI	GGATG	5 cut(s)	265, 704, 1028, 1057, 1122
BtsI	GCAGTG	1 cut(s)	854
BtsIMutI	CAGTG	2 cut(s)	359, 854
Cac8I	GCNNGC	1 cut(s)	513
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	3 cut(s)	189, 1446, 1530
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	6 cut(s)	292, 343, 489, 953, 1055, 1085
CviAII	CATG	6 cut(s)	121, 278, 503, 563, 584, 1627
CviQI	GTAC	6 cut(s)	292, 343, 489, 953, 1055, 1085
DdeI	CTNAG	5 cut(s)	72, 185, 346, 351, 1106
DpnI	GATC	5 cut(s)	49, 155, 210, 245, 945
DpnII	GATC	5 cut(s)	47, 153, 208, 243, 943
Eam1104I	CTCTTC	2 cut(s)	556, 1487
EarI	CTCTTC	2 cut(s)	556, 1487
Eco105I	TACGTA	1 cut(s)	902
Eco130I	CCWWGG	2 cut(s)	1130, 1283
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	734
Eco81I	CCTNAGG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	237, 1031
EcoT14I	CCWWGG	2 cut(s)	1130, 1283
ErhI	CCWWGG	2 cut(s)	1130, 1283
FaeI	CATG	6 cut(s)	124, 281, 506, 566, 587, 1630
FalI	AAGNNNNNCTT	4 cut(s)	499, 531, 752, 784
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	6 cut(s)	120, 277, 502, 562, 583, 1626
FauNDI	CATATG	1 cut(s)	1550
FblI	GTMKAC	4 cut(s)	479, 933, 1166, 1564
Fnu4HI	GCNGC	1 cut(s)	1414
FokI	GGATG	5 cut(s)	272, 711, 1015, 1044, 1109
Fsp4HI	GCNGC	1 cut(s)	1414
FspBI	CTAG	9 cut(s)	30, 45, 269, 315, 360, 833, 1269, 1317, 1650
GluI	GCNGC	1 cut(s)	1414
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	1447, 1532
HgaI	GACGC	1 cut(s)	490
Hin1II	CATG	6 cut(s)	124, 281, 506, 566, 587, 1630
HincII	GTYRAC	3 cut(s)	480, 1167, 1175
HindII	GTYRAC	3 cut(s)	480, 1167, 1175
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	7 cut(s)	264, 327, 457, 1157, 1171, 1201, 1297
HphI	GGTGA	2 cut(s)	110, 1459
Hpy166II	GTNNAC	9 cut(s)	81, 101, 357, 480, 905, 934, 1167, 1175, 1565
Hpy188I	TCNGA	5 cut(s)	193, 332, 795, 876, 1437
Hpy188III	TCNNGA	9 cut(s)	11, 45, 233, 278, 449, 596, 926, 1061, 1615
Hpy8I	GTNNAC	9 cut(s)	81, 101, 357, 480, 905, 934, 1167, 1175, 1565
Hpy99I	CGWCG	4 cut(s)	484, 760, 871, 1171
HpyAV	CCTTC	4 cut(s)	8, 385, 881, 1543
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	6 cut(s)	726, 755, 869, 901, 1068, 1146
HpyCH4V	TGCA	9 cut(s)	120, 161, 357, 506, 583, 645, 657, 1416, 1630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	5 cut(s)	72, 185, 346, 351, 1106
HpySE526I	ACGT	6 cut(s)	726, 755, 869, 901, 1068, 1146
Hsp92II	CATG	6 cut(s)	124, 281, 506, 566, 587, 1630
Kzo9I	GATC	5 cut(s)	47, 153, 208, 243, 943
LmnI	GCTCC	1 cut(s)	975
Lsp1109I	GCAGC	1 cut(s)	1400
LweI	GCATC	2 cut(s)	666, 799
MaeI	CTAG	9 cut(s)	30, 45, 269, 315, 360, 833, 1269, 1317, 1650
MaeII	ACGT	6 cut(s)	726, 755, 869, 901, 1068, 1146
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	5 cut(s)	49, 155, 210, 245, 945
MboI	GATC	5 cut(s)	47, 153, 208, 243, 943
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	1180
MmeI	TCCRAC	1 cut(s)	897
MroXI	GAANNNNTTC	1 cut(s)	764
MspCI	CTTAAG	1 cut(s)	418
MspR9I	CCNGG	2 cut(s)	239, 1033
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	2 cut(s)	239, 1033
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeI	CATATG	1 cut(s)	1550
NdeII	GATC	5 cut(s)	47, 153, 208, 243, 943
NlaIII	CATG	6 cut(s)	124, 281, 506, 566, 587, 1630
NlaIV	GGNNCC	1 cut(s)	1448
NmeAIII	GCCGAG	1 cut(s)	885
NmuCI	GTSAC	1 cut(s)	431
NspI	RCATGY	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	594
PagI	TCATGA	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	6 cut(s)	264, 327, 457, 1157, 1201, 1297
PkrI	GCNGC	1 cut(s)	1415
PleI	GAGTC	1 cut(s)	1179
PpsI	GAGTC	1 cut(s)	1179
Ppu21I	YACGTR	2 cut(s)	902, 1147
Psp6I	CCWGG	2 cut(s)	237, 1031
PspGI	CCWGG	2 cut(s)	237, 1031
PspN4I	GGNNCC	1 cut(s)	1448
PspPI	GGNCC	3 cut(s)	189, 1446, 1530
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	6 cut(s)	293, 344, 490, 954, 1056, 1086
RsaNI	GTAC	6 cut(s)	292, 343, 489, 953, 1055, 1085
SalI	GTCGAC	2 cut(s)	478, 1165
SatI	GCNGC	1 cut(s)	1414
Sau3AI	GATC	5 cut(s)	47, 153, 208, 243, 943
Sau96I	GGNCC	3 cut(s)	189, 1446, 1530
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	1 cut(s)	1180
ScrFI	CCNGG	2 cut(s)	239, 1033
SduI	GDGCHC	1 cut(s)	359
SfaNI	GCATC	2 cut(s)	666, 799
Sfr274I	CTCGAG	1 cut(s)	594
SfuI	TTCGAA	1 cut(s)	634
SinI	GGWCC	1 cut(s)	189
SlaI	CTCGAG	1 cut(s)	594
SmlI	CTYRAG	5 cut(s)	164, 418, 449, 594, 1208
SmoI	CTYRAG	5 cut(s)	164, 418, 449, 594, 1208
SnaBI	TACGTA	1 cut(s)	902
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	9 cut(s)	30, 45, 269, 315, 360, 833, 1269, 1317, 1650
StyD4I	CCNGG	2 cut(s)	237, 1031
StyI	CCWWGG	2 cut(s)	1130, 1283
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	6 cut(s)	729, 758, 872, 904, 1071, 1149
TaqI	TCGA	9 cut(s)	246, 308, 479, 595, 634, 705, 758, 1166, 1511
TatI	WGTACW	5 cut(s)	291, 342, 952, 1054, 1084
TfiI	GAWTC	6 cut(s)	264, 327, 457, 1157, 1201, 1297
TscAI	CASTG	2 cut(s)	359, 861
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	1 cut(s)	1413
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	7 cut(s)	17, 115, 218, 294, 600, 699, 1111
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	359, 861
Vha464I	CTTAAG	1 cut(s)	418
VneI	GTGCAC	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	4 cut(s)	139, 146, 194, 813
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	594
XmiI	GTMKAC	4 cut(s)	479, 933, 1166, 1564
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	9 cut(s)	30, 45, 269, 315, 360, 833, 1269, 1317, 1650
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.