Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00169

Orthogroup ID

OG0004874

Physical Location & Seq

Genomic Coordinates Forward (+)

85710 .. 86636

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAACATAATTGGCACCCTTAAAGAGTTAAGGGAGACTGCTGAACACTTGAAATCTGAGTTTGAGATGAAAGATCTTGGGAAAACACGGTTTTGCCTCAGTTTAGAACTCGAGCACCCTTATACCCAAAAGATGCTTAGGCGTTTCAACACTGATAAGATTAATCCTTCAAGCACCCCAATGGTCGTCCGTAGTCTTGATCCAAAGAAGGATCCATTCCGTCCAAAAGATGACGATGAAGATGTGCTAGAGGCGGAAGTGCCCTACCTAAGTGCAATAGGCACATTATTGTACTTGGCACAATGCACAAGACCGGATATCTCATTCGCAGTGAACTTGCTAGCTAGATATAGCTCTGCGCCAACACGACGCCATTGGACTGGTTTTGCTGATGCTGGGTACCTCTCTGACCCACACAAAGGTCGCTCCCAAACTGGTTATGTTTTCACCATGGGAAATACCGCGATATCTTGGAGGTCTACAAAGCAGACCTTAGTTGCTACCTCTTCGAATCATGCAGAGATTATTGCTCTTCACGAAGCAGTCCGTGAATGTATATGGCTTCAATCCATAGTTACGCATGTTCGAAGCAATTGTGGTTTGAAGTCTACCACAGATGAGCCAACGAGCATTTATGAGGATAATGCTGCTTGCATTGAACAAATGAAGCAAGGCTACATCAAAGGCGACAACACCAAGCATATATCGCCTAAATTCTTCTACAATCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.73

Weight (kDa)

7.08

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004874)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g24240 pycom520g00420
rosa_chinensis	RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831
rosa_multiflora	Rmu_sc0001998.1_g000012
rosa_rugosa	Rorug07G0292400
rosa_wichuraiana	Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	399
AccB1I	GGYRCC	2 cut(s)	14, 399
AccI	GTMKAC	2 cut(s)	479, 608
AccII	CGCG	1 cut(s)	464
AciI	CCGC	2 cut(s)	254, 462
AclWI	GGATC	3 cut(s)	194, 206, 219
AcsI	RAATTY	1 cut(s)	713
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	2 cut(s)	293, 401
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	6 cut(s)	52, 148, 171, 566, 604, 659
AluBI	AGCT	2 cut(s)	344, 354
AluI	AGCT	2 cut(s)	344, 354
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	3 cut(s)	194, 206, 219
Ama87I	CYCGRG	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	1 cut(s)	713
AseI	ATTAAT	1 cut(s)	162
Asp718I	GGTACC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	439
AsuII	TTCGAA	2 cut(s)	509, 586
AsuNHI	GCTAGC	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	2 cut(s)	14, 399
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	3 cut(s)	248, 341, 345
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
BmeT110I	CYCGRG	1 cut(s)	110
BmiI	GGNNCC	3 cut(s)	16, 213, 401
BmsI	GCATC	2 cut(s)	123, 382
BmtI	GCTAGC	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu14I	TTCGAA	2 cut(s)	509, 586
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	450
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	385, 439
BseDI	CCNNGG	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	2 cut(s)	48, 112
BseNI	ACTGG	2 cut(s)	385, 439
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	464
BshNI	GGYRCC	2 cut(s)	14, 399
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	110
Bsp119I	TTCGAA	2 cut(s)	509, 586
Bsp1286I	GDGCHC	2 cut(s)	117, 264
Bsp143I	GATC	3 cut(s)	73, 199, 211
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	2 cut(s)	254, 462
BspCNI	CTCAG	2 cut(s)	49, 111
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	16, 213, 401
BspOI	GCTAGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	194, 206, 219
BspQI	GCTCTTC	1 cut(s)	537
BspT104I	TTCGAA	2 cut(s)	509, 586
BspT107I	GGYRCC	2 cut(s)	14, 399
BsrI	ACTGG	2 cut(s)	385, 439
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	3 cut(s)	73, 199, 211
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	2 cut(s)	511, 537
BstACI	GRCGYC	1 cut(s)	370
BstBI	TTCGAA	2 cut(s)	509, 586
BstC8I	GCNNGC	2 cut(s)	342, 652
BstDEI	CTNAG	5 cut(s)	57, 98, 137, 269, 493
BstDSI	CCRYGG	1 cut(s)	450
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	3 cut(s)	76, 202, 214
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	73, 199, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	706
BstNSI	RCATGY	1 cut(s)	584
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	634
BstX2I	RGATCY	2 cut(s)	73, 211
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	2 cut(s)	73, 211
BtgI	CCRYGG	1 cut(s)	450
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	150, 336
Cac8I	GCNNGC	2 cut(s)	342, 652
CfoI	GCGC	1 cut(s)	361
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	292, 400
CviAII	CATG	3 cut(s)	451, 515, 581
CviJI	RGCY	5 cut(s)	344, 354, 562, 622, 675
CviKI_1	RGCY	5 cut(s)	344, 354, 562, 622, 675
CviQI	GTAC	2 cut(s)	292, 400
DdeI	CTNAG	5 cut(s)	57, 98, 137, 269, 493
DpnI	GATC	3 cut(s)	75, 201, 213
DpnII	GATC	3 cut(s)	73, 199, 211
Eam1104I	CTCTTC	2 cut(s)	511, 537
EarI	CTCTTC	2 cut(s)	511, 537
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	450
Eco32I	GATATC	2 cut(s)	319, 468
Eco88I	CYCGRG	1 cut(s)	110
EcoRV	GATATC	2 cut(s)	319, 468
EcoT14I	CCWWGG	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	3 cut(s)	454, 518, 584
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	3 cut(s)	450, 514, 580
FblI	GTMKAC	2 cut(s)	479, 608
Fnu4HI	GCNGC	1 cut(s)	648
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	3 cut(s)	248, 341, 345
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	1 cut(s)	648
GsaI	CCCAGC	1 cut(s)	399
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	454, 518, 584
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HinfI	GANTC	1 cut(s)	511
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	3 cut(s)	334, 480, 609
Hpy188I	TCNGA	2 cut(s)	58, 409
Hpy188III	TCNNGA	2 cut(s)	197, 536
Hpy8I	GTNNAC	3 cut(s)	334, 480, 609
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	2 cut(s)	177, 202
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	275, 306, 518, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	706
HpyF3I	CTNAG	5 cut(s)	57, 98, 137, 269, 493
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	454, 518, 584
HspAI	GCGC	1 cut(s)	359
KpnI	GGTACC	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	73, 199, 211
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	4 cut(s)	327, 366, 381, 420
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	2 cut(s)	123, 382
MaeI	CTAG	3 cut(s)	248, 341, 345
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	3 cut(s)	75, 201, 213
MboI	GATC	3 cut(s)	73, 199, 211
MboII	GAAGA	4 cut(s)	251, 498, 524, 709
MfeI	CAATTG	1 cut(s)	592
MflI	RGATCY	2 cut(s)	73, 211
MhlI	GDGCHC	2 cut(s)	117, 264
MluCI	AATT	3 cut(s)	9, 592, 713
MnlI	CCTC	6 cut(s)	107, 244, 413, 468, 514, 631
MseI	TTAA	3 cut(s)	21, 29, 162
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	592
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	1 cut(s)	706
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	3 cut(s)	73, 199, 211
NheI	GCTAGC	1 cut(s)	340
NlaIII	CATG	3 cut(s)	454, 518, 584
NlaIV	GGNNCC	3 cut(s)	16, 213, 401
NspI	RCATGY	1 cut(s)	584
NspV	TTCGAA	2 cut(s)	509, 586
PaeR7I	CTCGAG	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	649
PshBI	ATTAAT	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	395
PspN4I	GGNNCC	3 cut(s)	16, 213, 401
PspXI	VCTCGAGB	1 cut(s)	110
PsuI	RGATCY	2 cut(s)	73, 211
RsaI	GTAC	2 cut(s)	293, 401
RsaNI	GTAC	2 cut(s)	292, 400
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	21, 29, 162
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	3 cut(s)	73, 199, 211
SduI	GDGCHC	2 cut(s)	117, 264
SetI	ASST	8 cut(s)	270, 346, 356, 405, 424, 479, 494, 506
SfaNI	GCATC	2 cut(s)	123, 382
Sfr274I	CTCGAG	1 cut(s)	110
SfuI	TTCGAA	2 cut(s)	509, 586
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	9, 592, 713
SsiI	CCGC	2 cut(s)	254, 462
SspMI	CTAG	3 cut(s)	248, 341, 345
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	111, 509, 586
TasI	AATT	3 cut(s)	9, 592, 713
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	3 cut(s)	21, 29, 162
Tru9I	TTAA	3 cut(s)	21, 29, 162
TscAI	CASTG	2 cut(s)	157, 336
TseI	GCWGC	1 cut(s)	647
TspDTI	ATGAA	4 cut(s)	17, 83, 252, 680
TspGWI	ACGGA	3 cut(s)	179, 209, 536
TspRI	CASTG	2 cut(s)	157, 336
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	1 cut(s)	713
XceI	RCATGY	1 cut(s)	584
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	2 cut(s)	479, 608
XspI	CTAG	3 cut(s)	248, 341, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.