transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g24240 pycom520g00420 |
| rosa_chinensis | RchiOBHm_Chr1g0323091 RchiOBHm_Chr1g0367381 RchiOBHm_Chr2g0138291 RchiOBHm_Chr2g0148911 RchiOBHm_Chr2g0150891 RchiOBHm_Chr3g0491271 RchiOBHm_Chr4g0388351 RchiOBHm_Chr4g0435401 RchiOBHm_Chr5g0012171 RchiOBHm_Chr6g0282941 RchiOBHm_Chr7g0185711 RchiOBHm_Chr7g0186831 |
| rosa_multiflora | Rmu_sc0001998.1_g000012 |
| rosa_rugosa | Rorug07G0292400 |
| rosa_wichuraiana | Rw0G004540 Rw1G001620 Rw1G005040 Rw1G013360 Rw1G021570 Rw2G031870 Rw4G000690 Rw5G008320 Rw5G009260 Rw5G022080 Rw6G007050 Rw7G013470 Rw7G020380 Rw7G031880 Rw7G041220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 29, 158 |
| AclWI | GGATC | 1 cut(s) | 111 |
| AcsI | RAATTY | 1 cut(s) | 263 |
| AcuI | CTGAAG | 1 cut(s) | 173 |
| AflIII | ACRYGT | 1 cut(s) | 382 |
| AgsI | TTSAA | 2 cut(s) | 60, 209 |
| AjnI | CCWGG | 1 cut(s) | 312 |
| AluBI | AGCT | 1 cut(s) | 292 |
| AluI | AGCT | 1 cut(s) | 292 |
| AlwI | GGATC | 1 cut(s) | 111 |
| ApoI | RAATTY | 1 cut(s) | 263 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 93 |
| AsuII | TTCGAA | 1 cut(s) | 136 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 209, 241 |
| BciT130I | CCWGG | 1 cut(s) | 314 |
| Bme1390I | CCNGG | 1 cut(s) | 314 |
| BmrFI | CCNGG | 1 cut(s) | 314 |
| Bpu14I | TTCGAA | 1 cut(s) | 136 |
| BpuEI | CTTGAG | 1 cut(s) | 281 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 276, 306 |
| Bse3DI | GCAATG | 1 cut(s) | 356 |
| BseBI | CCWGG | 1 cut(s) | 314 |
| BseGI | GGATG | 1 cut(s) | 30 |
| BseMI | GCAATG | 1 cut(s) | 356 |
| BseMII | CTCAG | 1 cut(s) | 315 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| Bsp119I | TTCGAA | 1 cut(s) | 136 |
| Bsp143I | GATC | 3 cut(s) | 116, 300, 320 |
| BspCNI | CTCAG | 1 cut(s) | 316 |
| BspPI | GGATC | 1 cut(s) | 111 |
| BspT104I | TTCGAA | 1 cut(s) | 136 |
| BsrDI | GCAATG | 1 cut(s) | 356 |
| BssMI | GATC | 3 cut(s) | 116, 300, 320 |
| Bst2UI | CCWGG | 1 cut(s) | 314 |
| BstBI | TTCGAA | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 1 cut(s) | 401 |
| BstDEI | CTNAG | 3 cut(s) | 33, 324, 351 |
| BstF5I | GGATG | 1 cut(s) | 30 |
| BstKTI | GATC | 3 cut(s) | 119, 303, 323 |
| BstMBI | GATC | 3 cut(s) | 116, 300, 320 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 256 |
| BstNI | CCWGG | 1 cut(s) | 314 |
| BstNSI | RCATGY | 1 cut(s) | 386 |
| BstSCI | CCNGG | 1 cut(s) | 312 |
| BtsCI | GGATG | 1 cut(s) | 30 |
| Cac8I | GCNNGC | 1 cut(s) | 401 |
| CsiI | ACCWGGT | 1 cut(s) | 312 |
| CviAII | CATG | 4 cut(s) | 65, 131, 383, 423 |
| CviJI | RGCY | 5 cut(s) | 112, 172, 225, 292, 399 |
| CviKI_1 | RGCY | 5 cut(s) | 112, 172, 225, 292, 399 |
| DdeI | CTNAG | 3 cut(s) | 33, 324, 351 |
| DpnI | GATC | 3 cut(s) | 118, 302, 322 |
| DpnII | GATC | 3 cut(s) | 116, 300, 320 |
| Eco57I | CTGAAG | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 312 |
| FaeI | CATG | 4 cut(s) | 68, 134, 386, 426 |
| FatI | CATG | 4 cut(s) | 64, 130, 382, 422 |
| FblI | GTMKAC | 2 cut(s) | 29, 158 |
| FokI | GGATG | 1 cut(s) | 37 |
| Hin1II | CATG | 4 cut(s) | 68, 134, 386, 426 |
| Hpy166II | GTNNAC | 4 cut(s) | 30, 159, 310, 348 |
| Hpy188I | TCNGA | 3 cut(s) | 153, 325, 415 |
| Hpy188III | TCNNGA | 4 cut(s) | 86, 98, 298, 376 |
| Hpy8I | GTNNAC | 4 cut(s) | 30, 159, 310, 348 |
| HpyCH4IV | ACGT | 1 cut(s) | 371 |
| HpyCH4V | TGCA | 3 cut(s) | 14, 68, 204 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 256 |
| HpyF3I | CTNAG | 3 cut(s) | 33, 324, 351 |
| HpySE526I | ACGT | 1 cut(s) | 371 |
| Hsp92II | CATG | 4 cut(s) | 68, 134, 386, 426 |
| Kzo9I | GATC | 3 cut(s) | 116, 300, 320 |
| LmnI | GCTCC | 1 cut(s) | 297 |
| LpnPI | CCDG | 2 cut(s) | 299, 326 |
| MabI | ACCWGGT | 1 cut(s) | 312 |
| MaeII | ACGT | 1 cut(s) | 371 |
| MaeIII | GTNAC | 1 cut(s) | 124 |
| MalI | GATC | 3 cut(s) | 118, 302, 322 |
| MboI | GATC | 3 cut(s) | 116, 300, 320 |
| MboII | GAAGA | 2 cut(s) | 48, 259 |
| MfeI | CAATTG | 1 cut(s) | 142 |
| MluCI | AATT | 4 cut(s) | 142, 263, 393, 407 |
| MnlI | CCTC | 3 cut(s) | 181, 305, 319 |
| MroXI | GAANNNNTTC | 1 cut(s) | 93 |
| MseI | TTAA | 2 cut(s) | 231, 363 |
| MspR9I | CCNGG | 1 cut(s) | 314 |
| MunI | CAATTG | 1 cut(s) | 142 |
| MvaI | CCWGG | 1 cut(s) | 314 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 256 |
| NdeII | GATC | 3 cut(s) | 116, 300, 320 |
| NlaIII | CATG | 4 cut(s) | 68, 134, 386, 426 |
| NspI | RCATGY | 1 cut(s) | 386 |
| NspV | TTCGAA | 1 cut(s) | 136 |
| PciI | ACATGT | 1 cut(s) | 382 |
| PdmI | GAANNNNTTC | 1 cut(s) | 93 |
| PscI | ACATGT | 1 cut(s) | 382 |
| Psp6I | CCWGG | 1 cut(s) | 312 |
| PspGI | CCWGG | 1 cut(s) | 312 |
| SaqAI | TTAA | 2 cut(s) | 231, 363 |
| Sau3AI | GATC | 3 cut(s) | 116, 300, 320 |
| ScrFI | CCNGG | 1 cut(s) | 314 |
| SetI | ASST | 3 cut(s) | 294, 318, 374 |
| SexAI | ACCWGGT | 1 cut(s) | 312 |
| SfuI | TTCGAA | 1 cut(s) | 136 |
| SmlI | CTYRAG | 1 cut(s) | 296 |
| SmoI | CTYRAG | 1 cut(s) | 296 |
| Sse9I | AATT | 4 cut(s) | 142, 263, 393, 407 |
| StyD4I | CCNGG | 1 cut(s) | 312 |
| TaiI | ACGT | 1 cut(s) | 374 |
| TaqI | TCGA | 4 cut(s) | 115, 136, 319, 375 |
| TasI | AATT | 4 cut(s) | 142, 263, 393, 407 |
| Tru1I | TTAA | 2 cut(s) | 231, 363 |
| Tru9I | TTAA | 2 cut(s) | 231, 363 |
| TspDTI | ATGAA | 1 cut(s) | 230 |
| XapI | RAATTY | 1 cut(s) | 263 |
| XceI | RCATGY | 1 cut(s) | 386 |
| XmiI | GTMKAC | 2 cut(s) | 29, 158 |
| XmnI | GAANNNNTTC | 1 cut(s) | 93 |